{"id":"https://openalex.org/W3092397780","doi":"https://doi.org/10.1093/bib/bbaa212","title":"Deep-DRM: a computational method for identifying disease-related metabolites based on graph deep learning approaches","display_name":"Deep-DRM: a computational method for identifying disease-related metabolites based on graph deep learning approaches","publication_year":2020,"publication_date":"2020-10-01","ids":{"openalex":"https://openalex.org/W3092397780","doi":"https://doi.org/10.1093/bib/bbaa212","mag":"3092397780","pmid":"https://pubmed.ncbi.nlm.nih.gov/33048110"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbaa212","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbaa212","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5051004995","display_name":"Tianyi Zhao","orcid":"https://orcid.org/0000-0003-1913-081X"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Tianyi Zhao","raw_affiliation_strings":["Department of Computer Science at the Harbin Institute of Technology"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science at the Harbin Institute of Technology","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037178137","display_name":"Yang Hu","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Yang Hu","raw_affiliation_strings":["Department of Life Science at the Harbin Institute of Technology"],"affiliations":[{"raw_affiliation_string":"Department of Life Science at the Harbin Institute of Technology","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5052382857","display_name":"Liang Cheng","orcid":"https://orcid.org/0000-0002-6665-6710"},"institutions":[{"id":"https://openalex.org/I1320354487","display_name":"Target (United States)","ror":"https://ror.org/05mkyac79","country_code":"US","type":"company","lineage":["https://openalex.org/I1320354487"]},{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]},{"id":"https://openalex.org/I4210112069","display_name":"Theranostics (New Zealand)","ror":"https://ror.org/02wykja76","country_code":"NZ","type":"company","lineage":["https://openalex.org/I4210112069"]}],"countries":["CN","NZ","US"],"is_corresponding":false,"raw_author_name":"Liang Cheng","raw_affiliation_strings":["CAMS Key Laboratory of Molecular Probe and Targeted Theranostics, College of Bioinformatics Science and Technology at Harbin Medical University"],"affiliations":[{"raw_affiliation_string":"CAMS Key Laboratory of Molecular Probe and Targeted Theranostics, College of Bioinformatics Science and Technology at Harbin Medical University","institution_ids":["https://openalex.org/I4210112069","https://openalex.org/I1320354487","https://openalex.org/I156144747"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5051004995"],"corresponding_institution_ids":[],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":4.255,"has_fulltext":false,"cited_by_count":75,"citation_normalized_percentile":{"value":0.95455941,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"22","issue":"4","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.6645339727401733},{"id":"https://openalex.org/keywords/encode","display_name":"ENCODE","score":0.5974000692367554},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5848864912986755},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.571570873260498},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5633206963539124},{"id":"https://openalex.org/keywords/convolutional-neural-network","display_name":"Convolutional neural network","score":0.5075482130050659},{"id":"https://openalex.org/keywords/metabolite","display_name":"Metabolite","score":0.5001027584075928},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4615350663661957},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.44650861620903015},{"id":"https://openalex.org/keywords/metabolomics","display_name":"Metabolomics","score":0.41004669666290283},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.31439024209976196},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.2688939571380615},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2382497489452362},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.1418340802192688},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.12682679295539856},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.12462586164474487},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.07367339730262756}],"concepts":[{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.6645339727401733},{"id":"https://openalex.org/C66746571","wikidata":"https://www.wikidata.org/wiki/Q1134833","display_name":"ENCODE","level":3,"score":0.5974000692367554},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5848864912986755},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.571570873260498},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5633206963539124},{"id":"https://openalex.org/C81363708","wikidata":"https://www.wikidata.org/wiki/Q17084460","display_name":"Convolutional neural network","level":2,"score":0.5075482130050659},{"id":"https://openalex.org/C2777477808","wikidata":"https://www.wikidata.org/wiki/Q407595","display_name":"Metabolite","level":2,"score":0.5001027584075928},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4615350663661957},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.44650861620903015},{"id":"https://openalex.org/C21565614","wikidata":"https://www.wikidata.org/wiki/Q12149006","display_name":"Metabolomics","level":2,"score":0.41004669666290283},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.31439024209976196},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.2688939571380615},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2382497489452362},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.1418340802192688},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.12682679295539856},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.12462586164474487},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.07367339730262756},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008660","descriptor_name":"Metabolism","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008660","descriptor_name":"Metabolism","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008660","descriptor_name":"Metabolism","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbaa212","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbaa212","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33048110","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33048110","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G724259906","display_name":null,"funder_award_id":"61871160","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":26,"referenced_works":["https://openalex.org/W1934481644","https://openalex.org/W2013381079","https://openalex.org/W2143076797","https://openalex.org/W2159887157","https://openalex.org/W2310441748","https://openalex.org/W2471010858","https://openalex.org/W2600670236","https://openalex.org/W2603152534","https://openalex.org/W2767683865","https://openalex.org/W2786016794","https://openalex.org/W2791291745","https://openalex.org/W2796909069","https://openalex.org/W2802297432","https://openalex.org/W2806489700","https://openalex.org/W2888269462","https://openalex.org/W2888829195","https://openalex.org/W2892305669","https://openalex.org/W2908438355","https://openalex.org/W2983728827","https://openalex.org/W2990251597","https://openalex.org/W2997046468","https://openalex.org/W3037025246","https://openalex.org/W3045807016","https://openalex.org/W4250443313","https://openalex.org/W6681429132","https://openalex.org/W6780978214"],"related_works":["https://openalex.org/W2521903434","https://openalex.org/W1753739957","https://openalex.org/W2468279273","https://openalex.org/W2354198838","https://openalex.org/W3084209502","https://openalex.org/W1988419672","https://openalex.org/W4226493464","https://openalex.org/W3133861977","https://openalex.org/W2951211570","https://openalex.org/W3103566983"],"abstract_inverted_index":{"https://github.com/zty2009/GPDNN-for-Identify-ing-Disease-related-Metabolites.":[0]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":13},{"year":2024,"cited_by_count":10},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":25},{"year":2021,"cited_by_count":21},{"year":2020,"cited_by_count":2}],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}
