{"id":"https://openalex.org/W3082620742","doi":"https://doi.org/10.1093/bib/bbaa186","title":"Deep-belief network for predicting potential miRNA-disease associations","display_name":"Deep-belief network for predicting potential miRNA-disease associations","publication_year":2020,"publication_date":"2020-07-22","ids":{"openalex":"https://openalex.org/W3082620742","doi":"https://doi.org/10.1093/bib/bbaa186","mag":"3082620742","pmid":"https://pubmed.ncbi.nlm.nih.gov/34020550"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbaa186","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbaa186","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5036210249","display_name":"Xing Chen","orcid":"https://orcid.org/0000-0001-9028-5342"},"institutions":[{"id":"https://openalex.org/I25757504","display_name":"China University of Mining and Technology","ror":"https://ror.org/01xt2dr21","country_code":"CN","type":"education","lineage":["https://openalex.org/I25757504"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xing Chen","raw_affiliation_strings":["Artificial Intelligence Research Institute, China University of Mining and Technology"],"raw_orcid":"https://orcid.org/0000-0001-9028-5342","affiliations":[{"raw_affiliation_string":"Artificial Intelligence Research Institute, China University of Mining and Technology","institution_ids":["https://openalex.org/I25757504"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101432511","display_name":"Tianhao Li","orcid":"https://orcid.org/0000-0001-7496-9277"},"institutions":[{"id":"https://openalex.org/I25757504","display_name":"China University of Mining and Technology","ror":"https://ror.org/01xt2dr21","country_code":"CN","type":"education","lineage":["https://openalex.org/I25757504"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Tian-Hao Li","raw_affiliation_strings":["School of Information and Control Engineering, China University of Mining and Technology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Information and Control Engineering, China University of Mining and Technology","institution_ids":["https://openalex.org/I25757504"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053490763","display_name":"Yan Zhao","orcid":"https://orcid.org/0000-0002-5319-0202"},"institutions":[{"id":"https://openalex.org/I25757504","display_name":"China University of Mining and Technology","ror":"https://ror.org/01xt2dr21","country_code":"CN","type":"education","lineage":["https://openalex.org/I25757504"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yan Zhao","raw_affiliation_strings":["School of Information and Control Engineering, China University of Mining and Technology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Information and Control Engineering, China University of Mining and Technology","institution_ids":["https://openalex.org/I25757504"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027613930","display_name":"Chun-Chun Wang","orcid":"https://orcid.org/0000-0002-6795-4007"},"institutions":[{"id":"https://openalex.org/I25757504","display_name":"China University of Mining and Technology","ror":"https://ror.org/01xt2dr21","country_code":"CN","type":"education","lineage":["https://openalex.org/I25757504"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chun-Chun Wang","raw_affiliation_strings":["School of Information and Control Engineering, China University of Mining and Technology"],"raw_orcid":"https://orcid.org/0000-0002-6795-4007","affiliations":[{"raw_affiliation_string":"School of Information and Control Engineering, China University of Mining and Technology","institution_ids":["https://openalex.org/I25757504"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5082743227","display_name":"Chi-Chi Zhu","orcid":null},"institutions":[{"id":"https://openalex.org/I25757504","display_name":"China University of Mining and Technology","ror":"https://ror.org/01xt2dr21","country_code":"CN","type":"education","lineage":["https://openalex.org/I25757504"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chi-Chi Zhu","raw_affiliation_strings":["School of Information and Control Engineering, China University of Mining and Technology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Information and Control Engineering, China University of Mining and Technology","institution_ids":["https://openalex.org/I25757504"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5036210249"],"corresponding_institution_ids":["https://openalex.org/I25757504"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":9.234,"has_fulltext":false,"cited_by_count":180,"citation_normalized_percentile":{"value":0.99018013,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"22","issue":"3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11765","display_name":"Circular RNAs in diseases","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cross-validation","display_name":"Cross-validation","score":0.6938119530677795},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5970243215560913},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5831581354141235},{"id":"https://openalex.org/keywords/deep-belief-network","display_name":"Deep belief network","score":0.570280134677887},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.5102119445800781},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.4714185893535614},{"id":"https://openalex.org/keywords/computational-model","display_name":"Computational model","score":0.44817718863487244},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.43863773345947266},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.3909189999103546},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.3689364194869995},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3246559500694275},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.174936443567276},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.11502328515052795}],"concepts":[{"id":"https://openalex.org/C27181475","wikidata":"https://www.wikidata.org/wiki/Q541014","display_name":"Cross-validation","level":2,"score":0.6938119530677795},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5970243215560913},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5831581354141235},{"id":"https://openalex.org/C97385483","wikidata":"https://www.wikidata.org/wiki/Q16954980","display_name":"Deep belief network","level":3,"score":0.570280134677887},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.5102119445800781},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.4714185893535614},{"id":"https://openalex.org/C66024118","wikidata":"https://www.wikidata.org/wiki/Q1122506","display_name":"Computational model","level":2,"score":0.44817718863487244},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.43863773345947266},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3909189999103546},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.3689364194869995},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3246559500694275},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.174936443567276},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.11502328515052795},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020022","descriptor_name":"Genetic Predisposition to Disease","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020022","descriptor_name":"Genetic Predisposition to Disease","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020022","descriptor_name":"Genetic Predisposition to Disease","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbaa186","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbaa186","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34020550","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34020550","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/17","score":0.4099999964237213,"display_name":"Partnerships for the goals"}],"awards":[{"id":"https://openalex.org/G579333840","display_name":"\u57fa\u4e8e\u591a\u6e90\u6570\u636e\u878d\u5408\u7684\u836f\u7269\u54cd\u5e94\u548c\u836f\u7269\u76f8\u5173\u975e\u7f16\u7801RNA\u9776\u70b9\u9884\u6d4b\u7814\u7a76","funder_award_id":"61972399","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":65,"referenced_works":["https://openalex.org/W14098964","https://openalex.org/W1521652389","https://openalex.org/W1667789979","https://openalex.org/W1958510895","https://openalex.org/W1967087625","https://openalex.org/W1974650935","https://openalex.org/W1981989535","https://openalex.org/W1998404710","https://openalex.org/W2002995168","https://openalex.org/W2022732522","https://openalex.org/W2032392696","https://openalex.org/W2037044064","https://openalex.org/W2042484777","https://openalex.org/W2047967134","https://openalex.org/W2048603433","https://openalex.org/W2056750246","https://openalex.org/W2084781111","https://openalex.org/W2090335107","https://openalex.org/W2090406927","https://openalex.org/W2098318517","https://openalex.org/W2099567806","https://openalex.org/W2106029302","https://openalex.org/W2116531474","https://openalex.org/W2123680132","https://openalex.org/W2128768066","https://openalex.org/W2130979840","https://openalex.org/W2132694427","https://openalex.org/W2136943892","https://openalex.org/W2141222510","https://openalex.org/W2142937131","https://openalex.org/W2143839116","https://openalex.org/W2146292498","https://openalex.org/W2158135353","https://openalex.org/W2160505237","https://openalex.org/W2170686591","https://openalex.org/W2171232191","https://openalex.org/W2410390867","https://openalex.org/W2416873003","https://openalex.org/W2560198845","https://openalex.org/W2584926544","https://openalex.org/W2588025094","https://openalex.org/W2598821379","https://openalex.org/W2607159126","https://openalex.org/W2618303047","https://openalex.org/W2765950793","https://openalex.org/W2773500282","https://openalex.org/W2790013415","https://openalex.org/W2790406828","https://openalex.org/W2797145001","https://openalex.org/W2799532497","https://openalex.org/W2807827186","https://openalex.org/W2809363952","https://openalex.org/W2913999326","https://openalex.org/W2935703330","https://openalex.org/W2999417355","https://openalex.org/W3009963727","https://openalex.org/W3099000562","https://openalex.org/W3103971085","https://openalex.org/W4241886935","https://openalex.org/W4254588938","https://openalex.org/W6655994215","https://openalex.org/W6714589344","https://openalex.org/W6735022378","https://openalex.org/W6746633373","https://openalex.org/W6758862417"],"related_works":["https://openalex.org/W2585432886","https://openalex.org/W2165991108","https://openalex.org/W3082895349","https://openalex.org/W3004069267","https://openalex.org/W2565516711","https://openalex.org/W4327774331","https://openalex.org/W3136021864","https://openalex.org/W2572334665","https://openalex.org/W2248239756","https://openalex.org/W3040832198"],"abstract_inverted_index":{"MicroRNA":[0],"(miRNA)":[1],"plays":[2],"an":[3,243],"important":[4],"role":[5],"in":[6],"the":[7,24,53,56,62,90,102,108,124,131,138,153,164,173,208,226],"occurrence,":[8],"development,":[9],"diagnosis":[10],"and":[11,16,28,50,85,89,172,221],"treatment":[12],"of":[13,37,55,64,93,126,140,155,166,176,198,210,225],"diseases.":[14],"More":[15],"more":[17],"researchers":[18],"begin":[19],"to":[20,23,42,76,97,100,148,206,246],"pay":[21],"attention":[22],"relationship":[25],"between":[26],"miRNA":[27],"disease.":[29],"Compared":[30,106],"with":[31,107,116],"traditional":[32],"biological":[33,40],"experiments,":[34],"computational":[35,58],"method":[36,245],"integrating":[38],"heterogeneous":[39],"data":[41],"predict":[43,247],"potential":[44,248],"associations":[45,144],"can":[46],"effectively":[47],"save":[48],"time":[49],"cost.":[51],"Considering":[52],"limitations":[54],"previous":[57,109,191],"models,":[59],"we":[60,237],"developed":[61],"model":[63],"deep-belief":[65],"network":[66],"for":[67,81,119,201],"miRNA-disease":[68,83,128,249],"association":[69],"prediction":[70,146],"(DBNMDA).":[71],"We":[72],"constructed":[73],"feature":[74],"vectors":[75],"pre-train":[77],"restricted":[78],"Boltzmann":[79],"machines":[80],"all":[82,127],"pairs":[84,115,129],"applied":[86],"positive":[87],"samples":[88,96],"same":[91],"number":[92],"selected":[94],"negative":[95],"fine-tune":[98],"DBN":[99],"obtain":[101],"final":[103],"predicted":[104,229],"scores.":[105],"supervised":[110],"models":[111],"that":[112,240],"only":[113],"use":[114],"known":[117,143],"label":[118],"training,":[120],"DBNMDA":[121,151,241],"innovatively":[122],"utilizes":[123],"information":[125],"during":[130],"pre-training":[132],"process.":[133],"This":[134],"step":[135],"could":[136,238],"reduce":[137],"impact":[139],"too":[141],"few":[142],"on":[145,158,169,181],"accuracy":[147,209],"some":[149],"extent.":[150],"achieves":[152],"AUC":[154,165,175],"0.9104":[156],"based":[157,168,180],"global":[159],"leave-one-out":[160],"cross":[161,183],"validation":[162],"(LOOCV),":[163],"0.8232":[167],"local":[170],"LOOCV":[171],"average":[174],"0.9048":[177],"\u00b1":[178],"0.0026":[179],"5-fold":[182],"validation.":[184],"These":[185],"AUCs":[186],"are":[187],"better":[188],"than":[189],"other":[190],"models.":[192],"In":[193],"addition,":[194],"three":[195,202],"different":[196],"types":[197],"case":[199],"studies":[200],"diseases":[203],"were":[204,231],"implemented":[205],"demonstrate":[207],"DBNMDA.":[211],"As":[212],"a":[213],"result,":[214],"84%":[215],"(breast":[216],"neoplasms),":[217],"100%":[218],"(lung":[219],"neoplasms)":[220,224],"88%":[222],"(esophageal":[223],"top":[227],"50":[228],"miRNAs":[230],"verified":[232],"by":[233],"recent":[234],"literature.":[235],"Therefore,":[236],"conclude":[239],"is":[242],"effective":[244],"associations.":[250]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":26},{"year":2024,"cited_by_count":36},{"year":2023,"cited_by_count":36},{"year":2022,"cited_by_count":49},{"year":2021,"cited_by_count":18},{"year":2020,"cited_by_count":10},{"year":2019,"cited_by_count":1}],"updated_date":"2026-06-06T09:05:17.133730","created_date":"2025-10-10T00:00:00"}
