{"id":"https://openalex.org/W2947464213","doi":"https://doi.org/10.1093/bib/bbaa185","title":"TERL: classification of transposable elements by convolutional neural networks","display_name":"TERL: classification of transposable elements by convolutional neural networks","publication_year":2020,"publication_date":"2020-07-22","ids":{"openalex":"https://openalex.org/W2947464213","doi":"https://doi.org/10.1093/bib/bbaa185","mag":"2947464213","pmid":"https://pubmed.ncbi.nlm.nih.gov/34020551"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbaa185","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbaa185","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"http://hdl.handle.net/11449/221755","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5026586599","display_name":"Murilo Horacio Pereira da Cruz","orcid":"https://orcid.org/0000-0002-6667-1144"},"institutions":[{"id":"https://openalex.org/I1283613182","display_name":"Universidade Tecnol\u00f3gica Federal do Paran\u00e1","ror":"https://ror.org/002v2kq79","country_code":"BR","type":"education","lineage":["https://openalex.org/I1283613182"]}],"countries":["BR"],"is_corresponding":true,"raw_author_name":"Murilo Horacio Pereira da Cruz","raw_affiliation_strings":["Bioinformatics Graduation Program (PPGBIOINFO), Department of Computer Science, Federal University of Technology \u2013 Parana (UTFPR), Brazil","Federal University of Technology \u2013 Parana (UTFPR), Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics Graduation Program (PPGBIOINFO), Department of Computer Science, Federal University of Technology \u2013 Parana (UTFPR), Brazil","institution_ids":["https://openalex.org/I1283613182"]},{"raw_affiliation_string":"Federal University of Technology \u2013 Parana (UTFPR), Brazil","institution_ids":["https://openalex.org/I1283613182"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088024942","display_name":"Douglas Silva Domingues","orcid":"https://orcid.org/0000-0002-1290-0853"},"institutions":[{"id":"https://openalex.org/I17974374","display_name":"Universidade de S\u00e3o Paulo","ror":"https://ror.org/036rp1748","country_code":"BR","type":"education","lineage":["https://openalex.org/I17974374"]},{"id":"https://openalex.org/I879563668","display_name":"Universidade Estadual Paulista (Unesp)","ror":"https://ror.org/00987cb86","country_code":"BR","type":"education","lineage":["https://openalex.org/I879563668"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Douglas Silva Domingues","raw_affiliation_strings":["Department of Biodiversity, S\u00e3o Paulo State University at Rio Claro, Brazil","S\u00e3o Paulo State University at Botucatu, Brazil","University of S\u00e3o Paulo, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biodiversity, S\u00e3o Paulo State University at Rio Claro, Brazil","institution_ids":["https://openalex.org/I879563668"]},{"raw_affiliation_string":"S\u00e3o Paulo State University at Botucatu, Brazil","institution_ids":["https://openalex.org/I879563668"]},{"raw_affiliation_string":"University of S\u00e3o Paulo, Brazil","institution_ids":["https://openalex.org/I17974374"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038999508","display_name":"Priscila T. M. Saito","orcid":"https://orcid.org/0000-0002-4870-4766"},"institutions":[{"id":"https://openalex.org/I1283613182","display_name":"Universidade Tecnol\u00f3gica Federal do Paran\u00e1","ror":"https://ror.org/002v2kq79","country_code":"BR","type":"education","lineage":["https://openalex.org/I1283613182"]},{"id":"https://openalex.org/I181391015","display_name":"Universidade Estadual de Campinas (UNICAMP)","ror":"https://ror.org/04wffgt70","country_code":"BR","type":"education","lineage":["https://openalex.org/I181391015"]},{"id":"https://openalex.org/I249163148","display_name":"Centro Universit\u00e1rio Eur\u00edpedes de Marilia","ror":"https://ror.org/02er3bg49","country_code":"BR","type":"facility","lineage":["https://openalex.org/I249163148"]},{"id":"https://openalex.org/I4210142721","display_name":"Hospital Universit\u00e1rio da Universidade de S\u00e3o Paulo","ror":"https://ror.org/0406jsq08","country_code":"BR","type":"healthcare","lineage":["https://openalex.org/I17974374","https://openalex.org/I4210142721"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Priscila Tiemi Maeda Saito","raw_affiliation_strings":["Department of Computing, Federal University of Technology \u2013 Parana (UTFPR), Brazil","Euripides Soares da Rocha University of Marilia, Brazil","University of Campinas (IC\u2013UNICAMP), Brazil","University of S\u00e3o Paulo (ICMC-USP), Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computing, Federal University of Technology \u2013 Parana (UTFPR), Brazil","institution_ids":["https://openalex.org/I1283613182"]},{"raw_affiliation_string":"Euripides Soares da Rocha University of Marilia, Brazil","institution_ids":["https://openalex.org/I249163148"]},{"raw_affiliation_string":"University of Campinas (IC\u2013UNICAMP), Brazil","institution_ids":["https://openalex.org/I181391015"]},{"raw_affiliation_string":"University of S\u00e3o Paulo (ICMC-USP), Brazil","institution_ids":["https://openalex.org/I4210142721"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051358440","display_name":"Alexandre Rossi Paschoal","orcid":"https://orcid.org/0000-0002-8887-0582"},"institutions":[{"id":"https://openalex.org/I1283613182","display_name":"Universidade Tecnol\u00f3gica Federal do Paran\u00e1","ror":"https://ror.org/002v2kq79","country_code":"BR","type":"education","lineage":["https://openalex.org/I1283613182"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Alexandre Rossi Paschoal","raw_affiliation_strings":["Federal University of Technology \u2013 Parana (UTFPR), Brazil","University of S\u00e3o Paulo"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Federal University of Technology \u2013 Parana (UTFPR), Brazil","institution_ids":["https://openalex.org/I1283613182"]},{"raw_affiliation_string":"University of S\u00e3o Paulo","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5065155873","display_name":"Pedro H. Bugatti","orcid":"https://orcid.org/0000-0001-9421-9254"},"institutions":[{"id":"https://openalex.org/I1283613182","display_name":"Universidade Tecnol\u00f3gica Federal do Paran\u00e1","ror":"https://ror.org/002v2kq79","country_code":"BR","type":"education","lineage":["https://openalex.org/I1283613182"]},{"id":"https://openalex.org/I249163148","display_name":"Centro Universit\u00e1rio Eur\u00edpedes de Marilia","ror":"https://ror.org/02er3bg49","country_code":"BR","type":"facility","lineage":["https://openalex.org/I249163148"]},{"id":"https://openalex.org/I4210142721","display_name":"Hospital Universit\u00e1rio da Universidade de S\u00e3o Paulo","ror":"https://ror.org/0406jsq08","country_code":"BR","type":"healthcare","lineage":["https://openalex.org/I17974374","https://openalex.org/I4210142721"]}],"countries":["BR"],"is_corresponding":true,"raw_author_name":"Pedro Henrique Bugatti","raw_affiliation_strings":["Department of Computing, Federal University of Technology \u2013 Parana (UTFPR), Brazil","Euripides Soares da Rocha University of Marilia, Brazil","University of S\u00e3o Paulo (ICMC\u2013USP), Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computing, Federal University of Technology \u2013 Parana (UTFPR), Brazil","institution_ids":["https://openalex.org/I1283613182"]},{"raw_affiliation_string":"Euripides Soares da Rocha University of Marilia, Brazil","institution_ids":["https://openalex.org/I249163148"]},{"raw_affiliation_string":"University of S\u00e3o Paulo (ICMC\u2013USP), Brazil","institution_ids":["https://openalex.org/I4210142721"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5026586599","https://openalex.org/A5065155873"],"corresponding_institution_ids":["https://openalex.org/I1283613182","https://openalex.org/I249163148","https://openalex.org/I4210142721"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":5.5506,"has_fulltext":false,"cited_by_count":54,"citation_normalized_percentile":{"value":0.95176412,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"22","issue":"3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9911999702453613,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9911999702453613,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.96670001745224,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9492999911308289,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/transposable-element","display_name":"Transposable element","score":0.8762638568878174},{"id":"https://openalex.org/keywords/convolutional-neural-network","display_name":"Convolutional neural network","score":0.7990349531173706},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6332095861434937},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5370269417762756},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.16359153389930725},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.1423516571521759},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1385897994041443},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.0489024817943573}],"concepts":[{"id":"https://openalex.org/C4918238","wikidata":"https://www.wikidata.org/wiki/Q121438","display_name":"Transposable element","level":4,"score":0.8762638568878174},{"id":"https://openalex.org/C81363708","wikidata":"https://www.wikidata.org/wiki/Q17084460","display_name":"Convolutional neural network","level":2,"score":0.7990349531173706},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6332095861434937},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5370269417762756},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.16359153389930725},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.1423516571521759},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1385897994041443},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0489024817943573}],"mesh":[{"descriptor_ui":"D004251","descriptor_name":"DNA Transposable Elements","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004251","descriptor_name":"DNA Transposable Elements","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004251","descriptor_name":"DNA Transposable Elements","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D066264","descriptor_name":"Datasets as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066264","descriptor_name":"Datasets as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066264","descriptor_name":"Datasets as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbaa185","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbaa185","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34020551","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34020551","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:repositorio.unesp.br:11449/221755","is_oa":true,"landing_page_url":"http://hdl.handle.net/11449/221755","pdf_url":null,"source":{"id":"https://openalex.org/S4306402641","display_name":"LA Referencia (Red Federada de Repositorios Institucionales de Publicaciones Cient\u00edficas)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4383465926","host_organization_name":"LA Referencia","host_organization_lineage":["https://openalex.org/I4383465926"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"instacron:UNESP","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"pmh:oai:repositorio.unesp.br:11449/221755","is_oa":true,"landing_page_url":"http://hdl.handle.net/11449/221755","pdf_url":null,"source":{"id":"https://openalex.org/S4306402641","display_name":"LA Referencia (Red Federada de Repositorios Institucionales de Publicaciones Cient\u00edficas)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4383465926","host_organization_name":"LA Referencia","host_organization_lineage":["https://openalex.org/I4383465926"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"instacron:UNESP","raw_type":"info:eu-repo/semantics/article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3023983737","display_name":null,"funder_award_id":"422811/2016-5","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G3429167986","display_name":null,"funder_award_id":"309642/2015-9","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G520018953","display_name":null,"funder_award_id":"431668/2016-7","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G6856826230","display_name":null,"funder_award_id":"88882.432275/2019-01","funder_id":"https://openalex.org/F4320321091","funder_display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior"},{"id":"https://openalex.org/G7717227137","display_name":null,"funder_award_id":"454505/2014-0","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"}],"funders":[{"id":"https://openalex.org/F4320310976","display_name":"Universidad T\u00e9cnica Federico Santa Mar\u00eda","ror":"https://ror.org/05510vn56"},{"id":"https://openalex.org/F4320321091","display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior","ror":"https://ror.org/00x0ma614"},{"id":"https://openalex.org/F4320322025","display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico","ror":"https://ror.org/03swz6y49"},{"id":"https://openalex.org/F4320322771","display_name":"Secret\u00e1rio de Ci\u00eancia, Tecnologia e Ensino Superior, Governo do Estado de Parana","ror":"https://ror.org/05nyhnc56"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":44,"referenced_works":["https://openalex.org/W169052826","https://openalex.org/W1538131130","https://openalex.org/W1630811241","https://openalex.org/W1974332832","https://openalex.org/W2021344630","https://openalex.org/W2042086471","https://openalex.org/W2059864757","https://openalex.org/W2064675550","https://openalex.org/W2066320476","https://openalex.org/W2071501400","https://openalex.org/W2102400658","https://openalex.org/W2111779779","https://openalex.org/W2122111434","https://openalex.org/W2130212962","https://openalex.org/W2132141594","https://openalex.org/W2148764582","https://openalex.org/W2170505850","https://openalex.org/W2222590335","https://openalex.org/W2290849670","https://openalex.org/W2311607323","https://openalex.org/W2336509392","https://openalex.org/W2345512687","https://openalex.org/W2353701210","https://openalex.org/W2433743436","https://openalex.org/W2556763090","https://openalex.org/W2557283755","https://openalex.org/W2794752940","https://openalex.org/W2890724260","https://openalex.org/W2892332606","https://openalex.org/W2897216915","https://openalex.org/W2901218091","https://openalex.org/W2919115771","https://openalex.org/W2935703330","https://openalex.org/W2949541494","https://openalex.org/W2953384591","https://openalex.org/W2964121744","https://openalex.org/W2995727696","https://openalex.org/W3030913545","https://openalex.org/W3083835261","https://openalex.org/W3088698860","https://openalex.org/W3104181482","https://openalex.org/W6606879723","https://openalex.org/W6698064614","https://openalex.org/W6750002205"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W4237591666","https://openalex.org/W2103833188","https://openalex.org/W2164152191","https://openalex.org/W1534300978","https://openalex.org/W2387589589","https://openalex.org/W68905254","https://openalex.org/W2026307780"],"abstract_inverted_index":{"Transposable":[0],"elements":[1,67],"(TEs)":[2],"are":[3],"the":[4,15,85,101,105,119,145,177,192,195,208,229],"most":[5],"represented":[6],"sequences":[7,19,42,76,147,165,200],"occurring":[8],"in":[9],"eukaryotic":[10],"genomes.":[11],"Few":[12],"methods":[13,38,190],"provide":[14,29],"classification":[16,96,196,231],"of":[17,84,104,121,134,160,197,211,228,241],"these":[18,35],"into":[20,77,169],"deeper":[21],"levels,":[22],"such":[23,46],"as":[24,47],"superfamily":[25,170],"level,":[26,179],"which":[27,52],"could":[28,53],"useful":[30],"and":[31,49,73,87,132,136,140,142,158,162,172,174,185,204,233,238,246],"detailed":[32],"information":[33],"about":[34,235],"sequences.":[36,59],"Most":[37],"that":[39,71],"classify":[40,109],"TE":[41],"use":[43],"handcrafted":[44],"features":[45],"k-mers":[48],"homology-based":[50],"search,":[51],"be":[54],"inefficient":[55],"for":[56,138,144,164,176,215],"classifying":[57],"non-homologous":[58],"Here":[60],"we":[61],"propose":[62],"an":[63],"approach,":[64],"called":[65],"transposable":[66],"pepresentation":[68],"learner":[69],"(TERL),":[70],"preprocesses":[72],"transforms":[74],"one-dimensional":[75],"two-dimensional":[78],"space":[79],"data":[80,83,107],"(i.e.,":[81],"image-like":[82],"sequences)":[86],"apply":[88],"it":[89,110],"to":[90,99,108,117,223],"deep":[91],"convolutional":[92],"neural":[93],"networks.":[94],"This":[95],"method":[97,214],"tries":[98],"learn":[100,221],"best":[102],"representation":[103],"input":[106],"correctly.":[111],"We":[112,151,181],"have":[113,152],"conducted":[114],"six":[115],"experiments":[116],"test":[118],"performance":[120],"TERL":[122,219],"against":[123],"other":[124,189,213],"methods.":[125],"Our":[126],"approach":[127],"obtained":[128,154,187],"macro":[129,155],"mean":[130,156],"accuracies":[131,157],"F1-score":[133,159],"96.4%":[135],"85.8%":[137],"superfamilies":[139],"95.7%":[141],"91.5%":[143],"order":[146,178,198],"from":[148,166,201],"RepBase,":[149],"respectively.":[150,180],"also":[153],"95.0%":[161],"70.6%":[163],"seven":[167,202],"databases":[168,203],"level":[171,199,227],"89.3%":[173],"73.9%":[175],"surpassed":[182,205],"accuracy,":[183],"recall":[184],"specificity":[186],"by":[188,206],"on":[191],"experiment":[193],"with":[194],"far":[207],"time":[209],"elapsed":[210],"any":[212,225],"all":[216],"experiments.":[217],"Therefore,":[218],"can":[220],"how":[222],"predict":[224],"hierarchical":[226],"TEs":[230],"system":[232],"is":[234],"20":[236],"times":[237],"three":[239],"orders":[240],"magnitude":[242],"faster":[243],"than":[244],"TEclass":[245],"PASTEC,":[247],"respectively":[248],"https://github.com/muriloHoracio/TERL.":[249],"Contact:murilocruz@alunos.utfpr.edu.br.":[250]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":12},{"year":2024,"cited_by_count":15},{"year":2023,"cited_by_count":7},{"year":2022,"cited_by_count":9},{"year":2021,"cited_by_count":8}],"updated_date":"2026-05-31T08:46:17.908082","created_date":"2025-10-10T00:00:00"}
