{"id":"https://openalex.org/W3080297182","doi":"https://doi.org/10.1093/bib/bbaa179","title":"LncAS2Cancer: a comprehensive database for alternative splicing of lncRNAs across human cancers","display_name":"LncAS2Cancer: a comprehensive database for alternative splicing of lncRNAs across human cancers","publication_year":2020,"publication_date":"2020-08-04","ids":{"openalex":"https://openalex.org/W3080297182","doi":"https://doi.org/10.1093/bib/bbaa179","mag":"3080297182","pmid":"https://pubmed.ncbi.nlm.nih.gov/32820322"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbaa179","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbaa179","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5069216972","display_name":"Yulan Deng","orcid":"https://orcid.org/0000-0003-0269-3931"},"institutions":[{"id":"https://openalex.org/I4210089761","display_name":"West China Hospital of Sichuan University","ror":"https://ror.org/007mrxy13","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210089761"]},{"id":"https://openalex.org/I24185976","display_name":"Sichuan University","ror":"https://ror.org/011ashp19","country_code":"CN","type":"education","lineage":["https://openalex.org/I24185976"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yulan Deng","raw_affiliation_strings":["Department of Thoracic Surgery, West China Hospital, Sichuan University"],"affiliations":[{"raw_affiliation_string":"Department of Thoracic Surgery, West China Hospital, Sichuan University","institution_ids":["https://openalex.org/I24185976","https://openalex.org/I4210089761"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069130770","display_name":"Hao Luo","orcid":"https://orcid.org/0000-0002-2321-9924"},"institutions":[{"id":"https://openalex.org/I4210089761","display_name":"West China Hospital of Sichuan University","ror":"https://ror.org/007mrxy13","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210089761"]},{"id":"https://openalex.org/I24185976","display_name":"Sichuan University","ror":"https://ror.org/011ashp19","country_code":"CN","type":"education","lineage":["https://openalex.org/I24185976"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hao Luo","raw_affiliation_strings":["Department of Thoracic Surgery, West China Hospital, Sichuan University"],"affiliations":[{"raw_affiliation_string":"Department of Thoracic Surgery, West China Hospital, Sichuan University","institution_ids":["https://openalex.org/I24185976","https://openalex.org/I4210089761"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010734160","display_name":"Zhenyu Yang","orcid":"https://orcid.org/0000-0003-1458-6834"},"institutions":[{"id":"https://openalex.org/I24185976","display_name":"Sichuan University","ror":"https://ror.org/011ashp19","country_code":"CN","type":"education","lineage":["https://openalex.org/I24185976"]},{"id":"https://openalex.org/I4210089761","display_name":"West China Hospital of Sichuan University","ror":"https://ror.org/007mrxy13","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210089761"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhenyu Yang","raw_affiliation_strings":["Department of Thoracic Surgery, West China Hospital, Sichuan University"],"affiliations":[{"raw_affiliation_string":"Department of Thoracic Surgery, West China Hospital, Sichuan University","institution_ids":["https://openalex.org/I24185976","https://openalex.org/I4210089761"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5080431093","display_name":"Lunxu Liu","orcid":"https://orcid.org/0000-0003-3964-5378"},"institutions":[{"id":"https://openalex.org/I24185976","display_name":"Sichuan University","ror":"https://ror.org/011ashp19","country_code":"CN","type":"education","lineage":["https://openalex.org/I24185976"]},{"id":"https://openalex.org/I4210089761","display_name":"West China Hospital of Sichuan University","ror":"https://ror.org/007mrxy13","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210089761"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Lunxu Liu","raw_affiliation_strings":["Department of Thoracic Surgery, West China Hospital, Sichuan University"],"affiliations":[{"raw_affiliation_string":"Department of Thoracic Surgery, West China Hospital, Sichuan University","institution_ids":["https://openalex.org/I24185976","https://openalex.org/I4210089761"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5080431093"],"corresponding_institution_ids":["https://openalex.org/I24185976","https://openalex.org/I4210089761"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":0.9587,"has_fulltext":false,"cited_by_count":18,"citation_normalized_percentile":{"value":0.71073239,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":93,"max":99},"biblio":{"volume":"22","issue":"3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/rna-splicing","display_name":"RNA splicing","score":0.805097758769989},{"id":"https://openalex.org/keywords/alternative-splicing","display_name":"Alternative splicing","score":0.7717820405960083},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5997612476348877},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5727073550224304},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.5041269063949585},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4582042694091797},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.40797173976898193},{"id":"https://openalex.org/keywords/gene-isoform","display_name":"Gene isoform","score":0.3492240309715271},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3477795720100403},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.29138636589050293},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.18180221319198608}],"concepts":[{"id":"https://openalex.org/C54458228","wikidata":"https://www.wikidata.org/wiki/Q237218","display_name":"RNA splicing","level":4,"score":0.805097758769989},{"id":"https://openalex.org/C194583182","wikidata":"https://www.wikidata.org/wiki/Q21114084","display_name":"Alternative splicing","level":4,"score":0.7717820405960083},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5997612476348877},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5727073550224304},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.5041269063949585},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4582042694091797},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.40797173976898193},{"id":"https://openalex.org/C53345823","wikidata":"https://www.wikidata.org/wiki/Q5531554","display_name":"Gene isoform","level":3,"score":0.3492240309715271},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3477795720100403},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.29138636589050293},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.18180221319198608}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D017398","descriptor_name":"Alternative Splicing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017398","descriptor_name":"Alternative Splicing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017398","descriptor_name":"Alternative Splicing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbaa179","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbaa179","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:32820322","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32820322","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Good health and well-being","score":0.5600000023841858,"id":"https://metadata.un.org/sdg/3"}],"awards":[{"id":"https://openalex.org/G2675820305","display_name":null,"funder_award_id":"2019\u00a0M650243","funder_id":"https://openalex.org/F4320321543","funder_display_name":"China Postdoctoral Science Foundation"},{"id":"https://openalex.org/G5580535215","display_name":null,"funder_award_id":"2019HXBH047","funder_id":"https://openalex.org/F4320322990","funder_display_name":"Sichuan University"},{"id":"https://openalex.org/G5835390646","display_name":null,"funder_award_id":"ZYGD18021","funder_id":"https://openalex.org/F4320336042","funder_display_name":"West China Hospital, Sichuan University"},{"id":"https://openalex.org/G6687889691","display_name":null,"funder_award_id":"2019\u00a0T120835","funder_id":"https://openalex.org/F4320321543","funder_display_name":"China Postdoctoral Science Foundation"},{"id":"https://openalex.org/G6913117602","display_name":null,"funder_award_id":"31801119","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7688198999","display_name":null,"funder_award_id":"2016FZ0118","funder_id":"https://openalex.org/F4320333335","funder_display_name":"Sichuan Province Science and Technology Support Program"},{"id":"https://openalex.org/G7825539252","display_name":null,"funder_award_id":"ZYJC18009)","funder_id":"https://openalex.org/F4320336042","funder_display_name":"West China Hospital, Sichuan University"},{"id":"https://openalex.org/G8057352249","display_name":null,"funder_award_id":"81672311","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321543","display_name":"China Postdoctoral Science Foundation","ror":"https://ror.org/0426zh255"},{"id":"https://openalex.org/F4320322990","display_name":"Sichuan University","ror":"https://ror.org/011ashp19"},{"id":"https://openalex.org/F4320333335","display_name":"Sichuan Province Science and Technology Support Program","ror":null},{"id":"https://openalex.org/F4320336042","display_name":"West China Hospital, Sichuan University","ror":"https://ror.org/007mrxy13"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":69,"referenced_works":["https://openalex.org/W1975847255","https://openalex.org/W1990210083","https://openalex.org/W2011920499","https://openalex.org/W2031896201","https://openalex.org/W2036065307","https://openalex.org/W2066231767","https://openalex.org/W2088338354","https://openalex.org/W2101284218","https://openalex.org/W2113868616","https://openalex.org/W2117446594","https://openalex.org/W2117977572","https://openalex.org/W2122732537","https://openalex.org/W2124826140","https://openalex.org/W2136170412","https://openalex.org/W2141831115","https://openalex.org/W2145241604","https://openalex.org/W2155804510","https://openalex.org/W2176981778","https://openalex.org/W2197459998","https://openalex.org/W2198153867","https://openalex.org/W2255131131","https://openalex.org/W2258573009","https://openalex.org/W2259938310","https://openalex.org/W2331530999","https://openalex.org/W2335029242","https://openalex.org/W2373495149","https://openalex.org/W2510029267","https://openalex.org/W2513371636","https://openalex.org/W2560534389","https://openalex.org/W2593488635","https://openalex.org/W2594230179","https://openalex.org/W2606823712","https://openalex.org/W2612636081","https://openalex.org/W2616950861","https://openalex.org/W2618859545","https://openalex.org/W2746147763","https://openalex.org/W2748452569","https://openalex.org/W2754846502","https://openalex.org/W2765648964","https://openalex.org/W2782333160","https://openalex.org/W2784570320","https://openalex.org/W2790726201","https://openalex.org/W2794125518","https://openalex.org/W2806669590","https://openalex.org/W2808919170","https://openalex.org/W2884681204","https://openalex.org/W2885227878","https://openalex.org/W2886993743","https://openalex.org/W2887117829","https://openalex.org/W2891906735","https://openalex.org/W2892900345","https://openalex.org/W2896719374","https://openalex.org/W2898789672","https://openalex.org/W2899616402","https://openalex.org/W2922969171","https://openalex.org/W2924070408","https://openalex.org/W2944727022","https://openalex.org/W2946117880","https://openalex.org/W2949317881","https://openalex.org/W2950329612","https://openalex.org/W2951158909","https://openalex.org/W2981620348","https://openalex.org/W2982780080","https://openalex.org/W2996607603","https://openalex.org/W3004498009","https://openalex.org/W3006839399","https://openalex.org/W3016273280","https://openalex.org/W3176024308","https://openalex.org/W4237403594"],"related_works":["https://openalex.org/W2904939684","https://openalex.org/W2321791250","https://openalex.org/W4213427798","https://openalex.org/W2012312817","https://openalex.org/W2081598294","https://openalex.org/W2056672569","https://openalex.org/W2090969926","https://openalex.org/W4385462331","https://openalex.org/W2564462691","https://openalex.org/W2023199111"],"abstract_inverted_index":{"Accumulating":[0],"studies":[1],"demonstrated":[2],"that":[3],"the":[4,81,85,88,122,156,167,194,220,236],"roles":[5,239],"of":[6,34,94,125,141,196,223,240],"lncRNAs":[7,95,180],"for":[8,72,215],"tumorigenesis":[9],"were":[10,76],"isoform-dependent":[11],"and":[12,50,78,117,147,176,181,184,203,227],"their":[13],"aberrant":[14],"splicing":[15,33,65,70,74,92,197,213,225],"patterns":[16,93,226],"in":[17,80,170,243],"cancers":[18],"contributed":[19],"to":[20,106,120,131,143,211],"function":[21],"specificity.":[22],"However,":[23],"there":[24],"is":[25,247],"no":[26],"existing":[27],"database":[28,41,86],"focusing":[29],"on":[30,200],"cancer-related":[31],"alternative":[32,69],"lncRNAs.":[35],"Here,":[36],"we":[37,172,206],"developed":[38],"a":[39,139,208],"comprehensive":[40],"called":[42],"LncAS2Cancer,":[43,171],"which":[44,104],"collected":[45],"5335":[46],"bulk":[47],"RNA":[48,53],"sequencing":[49,54,191],"1826":[51],"single-cell":[52],"samples,":[55],"covering":[56],"over":[57],"30":[58],"cancer":[59],"types.":[60],"By":[61],"applying":[62],"six":[63],"state-of-the-art":[64],"algorithms,":[66],"50":[67],"859":[68],"events":[71,214],"8":[73],"types":[75],"identified":[77],"deposited":[79,169],"database.":[82],"In":[83],"addition,":[84],"contained":[87],"following":[89],"information:":[90],"(i)":[91],"under":[96],"seven":[97],"different":[98],"conditions,":[99],"such":[100],"as":[101,135,137],"gene":[102,174],"interference,":[103],"facilitated":[105],"infer":[107],"potential":[108,133,204],"regulators;":[109],"(ii)":[110],"annotation":[111],"information":[112],"derived":[113],"from":[114],"eight":[115],"sources":[116],"manual":[118],"curation,":[119],"understand":[121],"functional":[123,238],"impact":[124],"affected":[126,193],"sequences;":[127],"(iii)":[128],"survival":[129],"analysis":[130],"explore":[132],"biomarkers;":[134],"well":[136],"(iv)":[138],"suite":[140],"tools":[142],"browse,":[144],"search,":[145],"visualize":[146],"download":[148],"interesting":[149],"information.":[150],"LncAS2Cancer":[151,229,246],"could":[152],"not":[153],"only":[154],"confirm":[155],"known":[157],"cancer-associated":[158],"lncRNA":[159,224,241],"isoforms":[160,242],"but":[161],"also":[162],"indicate":[163],"novel":[164],"ones.":[165],"Using":[166],"data":[168],"compared":[173],"model":[175],"transcript":[177],"overlap":[178],"between":[179],"protein-coding":[182],"genes":[183],"discusses":[185],"how":[186],"these":[187],"factors,":[188],"along":[189],"with":[190,219],"depth,":[192],"interpretation":[195],"signals.":[198],"Based":[199],"recurrent":[201],"signals":[202],"confounders,":[205],"proposed":[207],"reliable":[209],"score":[210],"prioritize":[212],"further":[216],"elucidation.":[217],"Together,":[218],"broad":[221],"collection":[222],"annotation,":[228],"will":[230],"provide":[231],"important":[232],"new":[233],"insights":[234],"into":[235],"diverse":[237],"human":[244],"cancers.":[245],"freely":[248],"available":[249],"at":[250],"https://lncrna2as.cd120.com/.":[251]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":8},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
