{"id":"https://openalex.org/W3049760251","doi":"https://doi.org/10.1093/bib/bbaa172","title":"The functional determinants in the organization of bacterial genomes","display_name":"The functional determinants in the organization of bacterial genomes","publication_year":2020,"publication_date":"2020-08-10","ids":{"openalex":"https://openalex.org/W3049760251","doi":"https://doi.org/10.1093/bib/bbaa172","mag":"3049760251","pmid":"https://pubmed.ncbi.nlm.nih.gov/32793986"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbaa172","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbaa172","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5112911350","display_name":"Zhao-Qian Liu","orcid":null},"institutions":[{"id":"https://openalex.org/I154099455","display_name":"Shandong University","ror":"https://ror.org/0207yh398","country_code":"CN","type":"education","lineage":["https://openalex.org/I154099455"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhaoqian Liu","raw_affiliation_strings":["School of Mathematics, Shandong University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Mathematics, Shandong University","institution_ids":["https://openalex.org/I154099455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068009285","display_name":"Jingtong Feng","orcid":null},"institutions":[{"id":"https://openalex.org/I154099455","display_name":"Shandong University","ror":"https://ror.org/0207yh398","country_code":"CN","type":"education","lineage":["https://openalex.org/I154099455"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jingtong Feng","raw_affiliation_strings":["School of Mathematics, Shandong University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Mathematics, Shandong University","institution_ids":["https://openalex.org/I154099455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100646131","display_name":"Bin Yu","orcid":"https://orcid.org/0000-0002-2453-7852"},"institutions":[{"id":"https://openalex.org/I143413998","display_name":"Qingdao University of Science and Technology","ror":"https://ror.org/041j8js14","country_code":"CN","type":"education","lineage":["https://openalex.org/I143413998"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Bin Yu","raw_affiliation_strings":["College of Mathematics and Physics, Qingdao University of Science and Technology"],"raw_orcid":"https://orcid.org/0000-0002-2453-7852","affiliations":[{"raw_affiliation_string":"College of Mathematics and Physics, Qingdao University of Science and Technology","institution_ids":["https://openalex.org/I143413998"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022408570","display_name":"Qin Ma","orcid":"https://orcid.org/0000-0002-3264-8392"},"institutions":[{"id":"https://openalex.org/I52357470","display_name":"The Ohio State University","ror":"https://ror.org/00rs6vg23","country_code":"US","type":"education","lineage":["https://openalex.org/I52357470"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Qin Ma","raw_affiliation_strings":["Department of Biomedical Informatics, the Ohio State University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, the Ohio State University","institution_ids":["https://openalex.org/I52357470"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5017344694","display_name":"Bingqiang Liu","orcid":"https://orcid.org/0000-0002-5734-1135"},"institutions":[{"id":"https://openalex.org/I154099455","display_name":"Shandong University","ror":"https://ror.org/0207yh398","country_code":"CN","type":"education","lineage":["https://openalex.org/I154099455"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Bingqiang Liu","raw_affiliation_strings":["School of Mathematics, Shandong University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Mathematics, Shandong University","institution_ids":["https://openalex.org/I154099455"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5017344694","https://openalex.org/A5022408570"],"corresponding_institution_ids":["https://openalex.org/I154099455","https://openalex.org/I52357470"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":0.4882,"has_fulltext":false,"cited_by_count":8,"citation_normalized_percentile":{"value":0.62105675,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"22","issue":"3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10120","display_name":"Bacterial Genetics and Biotechnology","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.8302565217018127},{"id":"https://openalex.org/keywords/bacterial-genome-size","display_name":"Bacterial genome size","score":0.8144780397415161},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6216768026351929},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5972257256507874},{"id":"https://openalex.org/keywords/transcription","display_name":"Transcription (linguistics)","score":0.5020315647125244},{"id":"https://openalex.org/keywords/genomic-organization","display_name":"Genomic organization","score":0.45764607191085815},{"id":"https://openalex.org/keywords/bacterial-transcription","display_name":"Bacterial transcription","score":0.44981175661087036},{"id":"https://openalex.org/keywords/operon","display_name":"Operon","score":0.4435867667198181},{"id":"https://openalex.org/keywords/replication","display_name":"Replication (statistics)","score":0.42548495531082153},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3998189866542816},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3351670205593109},{"id":"https://openalex.org/keywords/promoter","display_name":"Promoter","score":0.15055492520332336},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.08037599921226501},{"id":"https://openalex.org/keywords/escherichia-coli","display_name":"Escherichia coli","score":0.06323614716529846}],"concepts":[{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.8302565217018127},{"id":"https://openalex.org/C3742359","wikidata":"https://www.wikidata.org/wiki/Q4839988","display_name":"Bacterial genome size","level":4,"score":0.8144780397415161},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6216768026351929},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5972257256507874},{"id":"https://openalex.org/C179926584","wikidata":"https://www.wikidata.org/wiki/Q207714","display_name":"Transcription (linguistics)","level":2,"score":0.5020315647125244},{"id":"https://openalex.org/C22322919","wikidata":"https://www.wikidata.org/wiki/Q5533501","display_name":"Genomic organization","level":4,"score":0.45764607191085815},{"id":"https://openalex.org/C26261996","wikidata":"https://www.wikidata.org/wiki/Q2382392","display_name":"Bacterial transcription","level":5,"score":0.44981175661087036},{"id":"https://openalex.org/C203075996","wikidata":"https://www.wikidata.org/wiki/Q139677","display_name":"Operon","level":4,"score":0.4435867667198181},{"id":"https://openalex.org/C12590798","wikidata":"https://www.wikidata.org/wiki/Q3933199","display_name":"Replication (statistics)","level":2,"score":0.42548495531082153},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3998189866542816},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3351670205593109},{"id":"https://openalex.org/C101762097","wikidata":"https://www.wikidata.org/wiki/Q224093","display_name":"Promoter","level":4,"score":0.15055492520332336},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.08037599921226501},{"id":"https://openalex.org/C547475151","wikidata":"https://www.wikidata.org/wiki/Q25419","display_name":"Escherichia coli","level":3,"score":0.06323614716529846},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D002876","descriptor_name":"Chromosomes, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002876","descriptor_name":"Chromosomes, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002876","descriptor_name":"Chromosomes, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004261","descriptor_name":"DNA Replication","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004261","descriptor_name":"DNA Replication","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004261","descriptor_name":"DNA Replication","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009876","descriptor_name":"Operon","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009876","descriptor_name":"Operon","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009876","descriptor_name":"Operon","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014158","descriptor_name":"Transcription, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014158","descriptor_name":"Transcription, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014158","descriptor_name":"Transcription, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbaa172","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbaa172","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:32793986","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32793986","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3090593387","display_name":null,"funder_award_id":"61772313","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3220252743","display_name":"\u57fa\u4e8e\u56fe\u4e0e\u7ec4\u5408\u4f18\u5316\u7684\u751f\u7269\u6570\u636e\u548c\u7f51\u7edc\u6570\u636e\u6316\u6398\u7b97\u6cd5\u7814\u7a76","funder_award_id":"11931008","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":153,"referenced_works":["https://openalex.org/W1263422348","https://openalex.org/W1514308025","https://openalex.org/W1579465735","https://openalex.org/W1913187248","https://openalex.org/W1920566578","https://openalex.org/W1953396020","https://openalex.org/W1963678831","https://openalex.org/W1965562485","https://openalex.org/W1966786968","https://openalex.org/W1967481935","https://openalex.org/W1970776621","https://openalex.org/W1971115321","https://openalex.org/W1971403296","https://openalex.org/W1972804002","https://openalex.org/W1977937037","https://openalex.org/W1978094899","https://openalex.org/W1985468934","https://openalex.org/W1993973779","https://openalex.org/W1997955496","https://openalex.org/W2008959928","https://openalex.org/W2009653511","https://openalex.org/W2016160555","https://openalex.org/W2018511557","https://openalex.org/W2022073880","https://openalex.org/W2024716136","https://openalex.org/W2025759607","https://openalex.org/W2025853251","https://openalex.org/W2029227665","https://openalex.org/W2032140335","https://openalex.org/W2032619610","https://openalex.org/W2032847418","https://openalex.org/W2034791018","https://openalex.org/W2034943763","https://openalex.org/W2036663020","https://openalex.org/W2039142314","https://openalex.org/W2041652393","https://openalex.org/W2042686872","https://openalex.org/W2043000592","https://openalex.org/W2046563455","https://openalex.org/W2048514812","https://openalex.org/W2050756311","https://openalex.org/W2055109879","https://openalex.org/W2059634393","https://openalex.org/W2061338306","https://openalex.org/W2062896692","https://openalex.org/W2066774187","https://openalex.org/W2067999487","https://openalex.org/W2070021921","https://openalex.org/W2071046223","https://openalex.org/W2073722488","https://openalex.org/W2081183202","https://openalex.org/W2086084754","https://openalex.org/W2090632681","https://openalex.org/W2091011084","https://openalex.org/W2091791718","https://openalex.org/W2097557319","https://openalex.org/W2100148696","https://openalex.org/W2100821807","https://openalex.org/W2101058845","https://openalex.org/W2101292724","https://openalex.org/W2102265739","https://openalex.org/W2104328914","https://openalex.org/W2104820165","https://openalex.org/W2106913956","https://openalex.org/W2109203567","https://openalex.org/W2109621905","https://openalex.org/W2112267254","https://openalex.org/W2112908406","https://openalex.org/W2113079985","https://openalex.org/W2113843263","https://openalex.org/W2114034054","https://openalex.org/W2115413658","https://openalex.org/W2118503070","https://openalex.org/W2119121014","https://openalex.org/W2121365413","https://openalex.org/W2123060905","https://openalex.org/W2123732476","https://openalex.org/W2126464107","https://openalex.org/W2132440004","https://openalex.org/W2137119243","https://openalex.org/W2142144473","https://openalex.org/W2143420371","https://openalex.org/W2144795887","https://openalex.org/W2146856779","https://openalex.org/W2148973980","https://openalex.org/W2151165630","https://openalex.org/W2152763121","https://openalex.org/W2152839547","https://openalex.org/W2154484815","https://openalex.org/W2155331065","https://openalex.org/W2156343210","https://openalex.org/W2157546065","https://openalex.org/W2158423461","https://openalex.org/W2158857952","https://openalex.org/W2161044909","https://openalex.org/W2162055898","https://openalex.org/W2164502082","https://openalex.org/W2165335121","https://openalex.org/W2166406784","https://openalex.org/W2171445712","https://openalex.org/W2172400873","https://openalex.org/W2217776472","https://openalex.org/W2276484157","https://openalex.org/W2297583838","https://openalex.org/W2301598169","https://openalex.org/W2306419994","https://openalex.org/W2321058582","https://openalex.org/W2341542582","https://openalex.org/W2344602241","https://openalex.org/W2409101036","https://openalex.org/W2418933939","https://openalex.org/W2489871023","https://openalex.org/W2519213694","https://openalex.org/W2519262962","https://openalex.org/W2558879079","https://openalex.org/W2562380586","https://openalex.org/W2582968398","https://openalex.org/W2593679202","https://openalex.org/W2593769407","https://openalex.org/W2605614082","https://openalex.org/W2613892789","https://openalex.org/W2620185679","https://openalex.org/W2740690937","https://openalex.org/W2750884682","https://openalex.org/W2763762085","https://openalex.org/W2783742719","https://openalex.org/W2792803089","https://openalex.org/W2794094125","https://openalex.org/W2873538059","https://openalex.org/W2900007277","https://openalex.org/W2900645803","https://openalex.org/W2921848211","https://openalex.org/W2950787603","https://openalex.org/W2951067234","https://openalex.org/W2951632821","https://openalex.org/W2963716098","https://openalex.org/W2990771302","https://openalex.org/W3006380141","https://openalex.org/W3013632693","https://openalex.org/W3020269334","https://openalex.org/W3022157959","https://openalex.org/W3022779553","https://openalex.org/W3084246142","https://openalex.org/W6628043643","https://openalex.org/W6631011338","https://openalex.org/W6658997133","https://openalex.org/W6698034568","https://openalex.org/W6734202871","https://openalex.org/W6744302368","https://openalex.org/W6770585114","https://openalex.org/W6776589619","https://openalex.org/W6776756930","https://openalex.org/W6776915690"],"related_works":["https://openalex.org/W2104328914","https://openalex.org/W2138750807","https://openalex.org/W2292512187","https://openalex.org/W3049760251","https://openalex.org/W2121059488","https://openalex.org/W1985093116","https://openalex.org/W2053871313","https://openalex.org/W4386006027","https://openalex.org/W4252755333","https://openalex.org/W2099577127"],"abstract_inverted_index":{"Bacterial":[0],"genomes":[1,16,60],"are":[2],"now":[3],"recognized":[4],"as":[5,88,110],"interacting":[6],"intimately":[7],"with":[8,62],"cellular":[9,28],"processes.":[10],"Uncovering":[11],"organizational":[12],"mechanisms":[13],"of":[14,22,58,76,97,130],"bacterial":[15,59,77,107,123],"has":[17],"been":[18,51],"a":[19,40],"primary":[20],"focus":[21],"researchers":[23],"to":[24,53,121],"reveal":[25],"the":[26,55,70,74,102],"potential":[27],"activities.":[29],"The":[30],"advances":[31],"in":[32],"both":[33,79],"experimental":[34],"techniques":[35],"and":[36,47,81,94,113,119,126,137,140],"computational":[37],"models":[38],"provide":[39,127],"tremendous":[41],"opportunity":[42],"for":[43,91],"understanding":[44,141],"these":[45],"mechanisms,":[46],"various":[48],"studies":[49,125],"have":[50],"proposed":[52],"explore":[54],"organization":[56,75],"rules":[57],"associated":[61],"functions":[63],"recently.":[64],"This":[65],"review":[66],"focuses":[67],"mainly":[68],"on":[69],"principles":[71],"that":[72,104],"shape":[73,106],"genomes,":[78,108],"locally":[80],"globally.":[82],"We":[83,99],"first":[84],"illustrate":[85],"local":[86],"structures":[87],"operons/transcription":[89],"units":[90],"facilitating":[92],"co-transcription":[93],"horizontal":[95],"transfer":[96],"genes.":[98],"then":[100],"clarify":[101],"constraints":[103],"globally":[105],"such":[109],"metabolism,":[111],"transcription":[112],"replication.":[114],"Finally,":[115],"we":[116],"highlight":[117],"challenges":[118],"opportunities":[120],"advance":[122],"genomic":[124],"application":[128],"perspectives":[129],"genome":[131,138],"organization,":[132],"including":[133],"pathway":[134],"hole":[135],"assignment":[136],"assembly":[139],"disease":[142],"mechanisms.":[143]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":4}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
