{"id":"https://openalex.org/W3048095379","doi":"https://doi.org/10.1093/bib/bbaa165","title":"Integrated omics analysis reveals the alteration of gut microbe\u2013metabolites in obese adults","display_name":"Integrated omics analysis reveals the alteration of gut microbe\u2013metabolites in obese adults","publication_year":2020,"publication_date":"2020-07-02","ids":{"openalex":"https://openalex.org/W3048095379","doi":"https://doi.org/10.1093/bib/bbaa165","mag":"3048095379","pmid":"https://pubmed.ncbi.nlm.nih.gov/32770198"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbaa165","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbaa165","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100385059","display_name":"Rong Li","orcid":"https://orcid.org/0000-0002-8210-1213"},"institutions":[{"id":"https://openalex.org/I176134282","display_name":"Guilin Medical University","ror":"https://ror.org/000prga03","country_code":"CN","type":"education","lineage":["https://openalex.org/I176134282"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Rong Li","raw_affiliation_strings":["Guilin Medical University"],"affiliations":[{"raw_affiliation_string":"Guilin Medical University","institution_ids":["https://openalex.org/I176134282"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073660110","display_name":"Xue Huang","orcid":"https://orcid.org/0000-0002-3034-1848"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Xue Huang","raw_affiliation_strings":["Department of Gastroenterology"],"affiliations":[{"raw_affiliation_string":"Department of Gastroenterology","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009297385","display_name":"Liang Xiao","orcid":"https://orcid.org/0000-0003-0836-4397"},"institutions":[{"id":"https://openalex.org/I176134282","display_name":"Guilin Medical University","ror":"https://ror.org/000prga03","country_code":"CN","type":"education","lineage":["https://openalex.org/I176134282"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiao Liang","raw_affiliation_strings":["Guilin Medical University"],"affiliations":[{"raw_affiliation_string":"Guilin Medical University","institution_ids":["https://openalex.org/I176134282"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026093502","display_name":"Min Su","orcid":"https://orcid.org/0000-0002-7867-1539"},"institutions":[{"id":"https://openalex.org/I176134282","display_name":"Guilin Medical University","ror":"https://ror.org/000prga03","country_code":"CN","type":"education","lineage":["https://openalex.org/I176134282"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Min Su","raw_affiliation_strings":["Guilin Medical University"],"affiliations":[{"raw_affiliation_string":"Guilin Medical University","institution_ids":["https://openalex.org/I176134282"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028630779","display_name":"Keng Po Lai","orcid":"https://orcid.org/0000-0001-8135-6030"},"institutions":[{"id":"https://openalex.org/I176134282","display_name":"Guilin Medical University","ror":"https://ror.org/000prga03","country_code":"CN","type":"education","lineage":["https://openalex.org/I176134282"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Keng Po Lai","raw_affiliation_strings":["Guilin Medical University"],"affiliations":[{"raw_affiliation_string":"Guilin Medical University","institution_ids":["https://openalex.org/I176134282"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5064539195","display_name":"Jian Chen","orcid":"https://orcid.org/0000-0003-1075-3148"},"institutions":[{"id":"https://openalex.org/I176134282","display_name":"Guilin Medical University","ror":"https://ror.org/000prga03","country_code":"CN","type":"education","lineage":["https://openalex.org/I176134282"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Jian Chen","raw_affiliation_strings":["Guilin Medical University"],"affiliations":[{"raw_affiliation_string":"Guilin Medical University","institution_ids":["https://openalex.org/I176134282"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5028630779","https://openalex.org/A5064539195"],"corresponding_institution_ids":["https://openalex.org/I176134282"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":2.8169,"has_fulltext":false,"cited_by_count":55,"citation_normalized_percentile":{"value":0.91679474,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"22","issue":"3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12267","display_name":"Diet and metabolism studies","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/2737","display_name":"Physiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11337","display_name":"Tryptophan and brain disorders","score":0.9887999892234802,"subfield":{"id":"https://openalex.org/subfields/2803","display_name":"Biological Psychiatry"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/gut-flora","display_name":"Gut flora","score":0.9173173904418945},{"id":"https://openalex.org/keywords/metabolomics","display_name":"Metabolomics","score":0.7927170991897583},{"id":"https://openalex.org/keywords/metabolome","display_name":"Metabolome","score":0.7382714152336121},{"id":"https://openalex.org/keywords/metabolite","display_name":"Metabolite","score":0.6466055512428284},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5997255444526672},{"id":"https://openalex.org/keywords/metabolic-pathway","display_name":"Metabolic pathway","score":0.42232197523117065},{"id":"https://openalex.org/keywords/metabolism","display_name":"Metabolism","score":0.3106328845024109},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.2555735111236572},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.21453967690467834}],"concepts":[{"id":"https://openalex.org/C539455810","wikidata":"https://www.wikidata.org/wiki/Q739734","display_name":"Gut flora","level":2,"score":0.9173173904418945},{"id":"https://openalex.org/C21565614","wikidata":"https://www.wikidata.org/wiki/Q12149006","display_name":"Metabolomics","level":2,"score":0.7927170991897583},{"id":"https://openalex.org/C135870905","wikidata":"https://www.wikidata.org/wiki/Q903667","display_name":"Metabolome","level":3,"score":0.7382714152336121},{"id":"https://openalex.org/C2777477808","wikidata":"https://www.wikidata.org/wiki/Q407595","display_name":"Metabolite","level":2,"score":0.6466055512428284},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5997255444526672},{"id":"https://openalex.org/C192989942","wikidata":"https://www.wikidata.org/wiki/Q68685","display_name":"Metabolic pathway","level":3,"score":0.42232197523117065},{"id":"https://openalex.org/C62231903","wikidata":"https://www.wikidata.org/wiki/Q1057","display_name":"Metabolism","level":2,"score":0.3106328845024109},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.2555735111236572},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.21453967690467834}],"mesh":[{"descriptor_ui":"D000069196","descriptor_name":"Gastrointestinal Microbiome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069196","descriptor_name":"Gastrointestinal Microbiome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069196","descriptor_name":"Gastrointestinal Microbiome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000328","descriptor_name":"Adult","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000328","descriptor_name":"Adult","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000328","descriptor_name":"Adult","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005243","descriptor_name":"Feces","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D005243","descriptor_name":"Feces","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D005243","descriptor_name":"Feces","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009765","descriptor_name":"Obesity","qualifier_ui":"Q000097","qualifier_name":"blood","is_major_topic":false},{"descriptor_ui":"D009765","descriptor_name":"Obesity","qualifier_ui":"Q000097","qualifier_name":"blood","is_major_topic":false},{"descriptor_ui":"D009765","descriptor_name":"Obesity","qualifier_ui":"Q000097","qualifier_name":"blood","is_major_topic":false},{"descriptor_ui":"D009765","descriptor_name":"Obesity","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009765","descriptor_name":"Obesity","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009765","descriptor_name":"Obesity","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009765","descriptor_name":"Obesity","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D009765","descriptor_name":"Obesity","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D009765","descriptor_name":"Obesity","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D015992","descriptor_name":"Body Mass Index","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015992","descriptor_name":"Body Mass Index","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015992","descriptor_name":"Body Mass Index","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016022","descriptor_name":"Case-Control Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016022","descriptor_name":"Case-Control Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016022","descriptor_name":"Case-Control Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbaa165","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbaa165","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:32770198","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32770198","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.4099999964237213,"display_name":"Good health and well-being"}],"awards":[{"id":"https://openalex.org/G6135349849","display_name":null,"funder_award_id":"81660610","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7167669866","display_name":null,"funder_award_id":"81560134","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":81,"referenced_works":["https://openalex.org/W1579591484","https://openalex.org/W1742384778","https://openalex.org/W1766122222","https://openalex.org/W1816148962","https://openalex.org/W1836142841","https://openalex.org/W1860081517","https://openalex.org/W1913846922","https://openalex.org/W1969589474","https://openalex.org/W1971071686","https://openalex.org/W1974378355","https://openalex.org/W1980261428","https://openalex.org/W1991518996","https://openalex.org/W1994756851","https://openalex.org/W1995187187","https://openalex.org/W1997092084","https://openalex.org/W1999697071","https://openalex.org/W2000777408","https://openalex.org/W2017771330","https://openalex.org/W2017818975","https://openalex.org/W2036097574","https://openalex.org/W2054032039","https://openalex.org/W2057343748","https://openalex.org/W2058117698","https://openalex.org/W2071841602","https://openalex.org/W2081028309","https://openalex.org/W2095854550","https://openalex.org/W2098762803","https://openalex.org/W2101914549","https://openalex.org/W2113468195","https://openalex.org/W2117827997","https://openalex.org/W2124620553","https://openalex.org/W2130362366","https://openalex.org/W2130420663","https://openalex.org/W2135989088","https://openalex.org/W2139433316","https://openalex.org/W2141797304","https://openalex.org/W2151798187","https://openalex.org/W2158958532","https://openalex.org/W2161394655","https://openalex.org/W2327115568","https://openalex.org/W2437355447","https://openalex.org/W2465534016","https://openalex.org/W2553716633","https://openalex.org/W2558428480","https://openalex.org/W2581656109","https://openalex.org/W2587054273","https://openalex.org/W2588130051","https://openalex.org/W2606000929","https://openalex.org/W2625861313","https://openalex.org/W2717418392","https://openalex.org/W2735334973","https://openalex.org/W2738647095","https://openalex.org/W2741910696","https://openalex.org/W2744602602","https://openalex.org/W2754237825","https://openalex.org/W2760183031","https://openalex.org/W2777953731","https://openalex.org/W2785540442","https://openalex.org/W2792639941","https://openalex.org/W2803790829","https://openalex.org/W2804921523","https://openalex.org/W2806403091","https://openalex.org/W2806531878","https://openalex.org/W2809642430","https://openalex.org/W2889306102","https://openalex.org/W2906655129","https://openalex.org/W2908425894","https://openalex.org/W2944927691","https://openalex.org/W2946332264","https://openalex.org/W2948455746","https://openalex.org/W2949672986","https://openalex.org/W2963132797","https://openalex.org/W2966251567","https://openalex.org/W2971799452","https://openalex.org/W2972142781","https://openalex.org/W2972670983","https://openalex.org/W2980011801","https://openalex.org/W2981857457","https://openalex.org/W2986976548","https://openalex.org/W2989288502","https://openalex.org/W3006668551"],"related_works":["https://openalex.org/W1996644818","https://openalex.org/W1965468642","https://openalex.org/W2093500216","https://openalex.org/W2053588008","https://openalex.org/W2916376502","https://openalex.org/W3101161779","https://openalex.org/W423371831","https://openalex.org/W2777729175","https://openalex.org/W2260452057","https://openalex.org/W4295779760"],"abstract_inverted_index":{"Obesity,":[0],"a":[1,6,46,171],"risk":[2],"to":[3,58,95,122,158,197,199],"health,":[4],"is":[5,36,82],"global":[7],"problem":[8],"in":[9,52,61,79,104,137,146,151,178,222],"modern":[10],"society.":[11],"The":[12,140,207,225],"prevalence":[13],"of":[14,30,49,67,110,127,154,175,209,236],"obesity":[15,204,237],"was":[16],"approximately":[17],"13%":[18],"among":[19],"world's":[20],"adult":[21],"population.":[22],"Recently,":[23],"several":[24],"reports":[25],"suggested":[26],"that":[27,143],"the":[28,59,68,97,115,124,131,135,144,152,179,213,234],"interference":[29],"gut":[31,71,73,98,128,138,147,155,180,217],"microbiota":[32,44,99,129,148],"composition":[33],"and":[34,54,75,92,100,107,117,163,181,192,205,219,238],"function":[35],"associated":[37],"with":[38],"metabolic":[39,200,239],"disorders,":[40],"including":[41,183],"obesity.":[42],"Gut":[43],"produce":[45],"board":[47],"range":[48],"metabolites":[50,133,156,177],"involved":[51],"energy":[53],"glucose":[55],"homeostasis,":[56],"leading":[57],"alteration":[60],"host":[62,76,132,220],"metabolism.":[63],"However,":[64],"systematic":[65],"evaluation":[66,235],"relationship":[69],"between":[70,216],"microbiota,":[72],"metabolite":[74,77,102,227],"profiles":[78,103],"obese":[80,108,223],"adults":[81,109],"still":[83],"lacking.":[84],"In":[85],"this":[86,210],"study,":[87],"we":[88,120],"used":[89],"comparative":[90],"metagenomics":[91],"metabolomics":[93],"analysis":[94,169],"determine":[96],"gut-host":[101],"six":[105],"normal":[106],"Chinese":[111],"origin,":[112],"respectively.":[113],"Following":[114],"functional":[116],"pathway":[118],"analysis,":[119],"aimed":[121],"understand":[123],"possible":[125,172,214],"impact":[126],"on":[130],"via":[134],"change":[136,145],"metabolites.":[139],"result":[141,150],"showed":[142],"may":[149],"modulation":[153],"contributing":[157],"glycolysis,":[159],"tricarboxylic":[160],"acid":[161],"cycle":[162],"homolactic":[164],"fermentation.":[165],"Furthermore,":[166],"integrated":[167],"metabolomic":[168],"demonstrated":[170],"positive":[173],"correlation":[174],"dysregulated":[176],"host,":[182],"l-phenylalanine,":[184],"l-tyrosine,":[185],"uric":[186],"acid,":[187,189],"kynurenic":[188],"cholesterol":[190],"sulfate":[191],"glucosamine,":[193],"which":[194],"were":[195],"reported":[196],"contribute":[198],"disorders":[201],"such":[202],"as":[203,231],"diabetes.":[206],"findings":[208],"study":[211],"provide":[212],"association":[215],"microbiota-metabolites":[218],"metabolism":[221],"adults.":[224],"identified":[226],"changes":[228],"could":[229],"serve":[230],"biomarkers":[232],"for":[233],"disorders.":[240]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":14},{"year":2023,"cited_by_count":7},{"year":2022,"cited_by_count":17},{"year":2021,"cited_by_count":10}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
