{"id":"https://openalex.org/W3038114454","doi":"https://doi.org/10.1093/bib/bbaa119","title":"PredCID: prediction of driver frameshift indels in human cancer","display_name":"PredCID: prediction of driver frameshift indels in human cancer","publication_year":2020,"publication_date":"2020-05-19","ids":{"openalex":"https://openalex.org/W3038114454","doi":"https://doi.org/10.1093/bib/bbaa119","mag":"3038114454","pmid":"https://pubmed.ncbi.nlm.nih.gov/32591774"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbaa119","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbaa119","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5044447237","display_name":"Zhenyu Yue","orcid":"https://orcid.org/0000-0002-9370-2540"},"institutions":[{"id":"https://openalex.org/I143868143","display_name":"Anhui University","ror":"https://ror.org/05th6yx34","country_code":"CN","type":"education","lineage":["https://openalex.org/I143868143"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhenyu Yue","raw_affiliation_strings":["Anhui University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Anhui University","institution_ids":["https://openalex.org/I143868143"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091834947","display_name":"Xinlu Chu","orcid":null},"institutions":[{"id":"https://openalex.org/I143868143","display_name":"Anhui University","ror":"https://ror.org/05th6yx34","country_code":"CN","type":"education","lineage":["https://openalex.org/I143868143"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xinlu Chu","raw_affiliation_strings":["Institutes of Physical Science and Information Technology, Anhui University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institutes of Physical Science and Information Technology, Anhui University","institution_ids":["https://openalex.org/I143868143"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5065943710","display_name":"Junfeng Xia","orcid":"https://orcid.org/0000-0003-3024-1705"},"institutions":[{"id":"https://openalex.org/I143868143","display_name":"Anhui University","ror":"https://ror.org/05th6yx34","country_code":"CN","type":"education","lineage":["https://openalex.org/I143868143"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Junfeng Xia","raw_affiliation_strings":["Key Laboratory of Intelligent Computing and Signal Processing of Ministry of Education, Institutes of Physical Science and Information Technology, Anhui University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Intelligent Computing and Signal Processing of Ministry of Education, Institutes of Physical Science and Information Technology, Anhui University","institution_ids":["https://openalex.org/I143868143"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5065943710"],"corresponding_institution_ids":["https://openalex.org/I143868143"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":2.1155,"has_fulltext":false,"cited_by_count":36,"citation_normalized_percentile":{"value":0.87971452,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":99},"biblio":{"volume":"22","issue":"3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/frameshift-mutation","display_name":"Frameshift mutation","score":0.9792060256004333},{"id":"https://openalex.org/keywords/indel","display_name":"Indel","score":0.8460886478424072},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5447271466255188},{"id":"https://openalex.org/keywords/indel-mutation","display_name":"INDEL Mutation","score":0.5168541073799133},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4297707974910736},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3976110517978668},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3457832634449005},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.28690698742866516},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.27052465081214905},{"id":"https://openalex.org/keywords/mutation","display_name":"Mutation","score":0.2629745602607727}],"concepts":[{"id":"https://openalex.org/C29906990","wikidata":"https://www.wikidata.org/wiki/Q1440688","display_name":"Frameshift mutation","level":4,"score":0.9792060256004333},{"id":"https://openalex.org/C119054055","wikidata":"https://www.wikidata.org/wiki/Q1576681","display_name":"Indel","level":5,"score":0.8460886478424072},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5447271466255188},{"id":"https://openalex.org/C2910714999","wikidata":"https://www.wikidata.org/wiki/Q1576681","display_name":"INDEL Mutation","level":5,"score":0.5168541073799133},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4297707974910736},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3976110517978668},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3457832634449005},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.28690698742866516},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.27052465081214905},{"id":"https://openalex.org/C501734568","wikidata":"https://www.wikidata.org/wiki/Q42918","display_name":"Mutation","level":3,"score":0.2629745602607727},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.0},{"id":"https://openalex.org/C153209595","wikidata":"https://www.wikidata.org/wiki/Q501128","display_name":"Single-nucleotide polymorphism","level":4,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009363","descriptor_name":"Neoplasm Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009363","descriptor_name":"Neoplasm Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009363","descriptor_name":"Neoplasm Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016368","descriptor_name":"Frameshift Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016368","descriptor_name":"Frameshift Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016368","descriptor_name":"Frameshift Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D052138","descriptor_name":"Genes, Neoplasm","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D052138","descriptor_name":"Genes, Neoplasm","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D052138","descriptor_name":"Genes, Neoplasm","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054643","descriptor_name":"INDEL Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054643","descriptor_name":"INDEL Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054643","descriptor_name":"INDEL Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbaa119","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbaa119","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:32591774","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32591774","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/10","display_name":"Reduced inequalities","score":0.5299999713897705},{"id":"https://metadata.un.org/sdg/16","display_name":"Peace, Justice and strong institutions","score":0.47999998927116394}],"awards":[{"id":"https://openalex.org/G2483327137","display_name":"\u8f7d\u80fd\u7c92\u5b50\u5bf9\u5173\u952e\u751f\u7269\u9776\u7684\u5206\u5b50\u8c03\u63a7\u673a\u5236\u4e0e\u5e94\u7528\u57fa\u7840\u7814\u7a76","funder_award_id":"11835014","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5006237592","display_name":null,"funder_award_id":"U19A2064","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5573161910","display_name":null,"funder_award_id":"61672037","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":35,"referenced_works":["https://openalex.org/W1482244404","https://openalex.org/W1900984040","https://openalex.org/W1976815080","https://openalex.org/W2001036195","https://openalex.org/W2016193168","https://openalex.org/W2059300459","https://openalex.org/W2072572998","https://openalex.org/W2096777589","https://openalex.org/W2097606916","https://openalex.org/W2101234009","https://openalex.org/W2106578986","https://openalex.org/W2114029728","https://openalex.org/W2139969213","https://openalex.org/W2145191876","https://openalex.org/W2145809383","https://openalex.org/W2146973661","https://openalex.org/W2160995259","https://openalex.org/W2171777347","https://openalex.org/W2224056471","https://openalex.org/W2604078450","https://openalex.org/W2610976711","https://openalex.org/W2734891494","https://openalex.org/W2765235107","https://openalex.org/W2792363117","https://openalex.org/W2802948002","https://openalex.org/W2883814060","https://openalex.org/W2885727518","https://openalex.org/W2894836881","https://openalex.org/W2904828342","https://openalex.org/W2905130244","https://openalex.org/W2948505931","https://openalex.org/W3029661147","https://openalex.org/W4250359879","https://openalex.org/W6675354045","https://openalex.org/W6757396302"],"related_works":["https://openalex.org/W1971376828","https://openalex.org/W2135846417","https://openalex.org/W2167094946","https://openalex.org/W4206406917","https://openalex.org/W2080028493","https://openalex.org/W4200277296","https://openalex.org/W2046457574","https://openalex.org/W3103976079","https://openalex.org/W4387460329","https://openalex.org/W2940885779"],"abstract_inverted_index":{"The":[0],"discrimination":[1],"of":[2,15,25,58,62,65,153],"driver":[3,26,85,92,139],"from":[4,56,142],"passenger":[5],"mutations":[6,27],"has":[7],"been":[8],"a":[9,77,147],"hot":[10],"topic":[11],"in":[12,28,136,156],"the":[13,23,39,68,117],"field":[14],"cancer":[16,29,40,91,138],"biology.":[17],"Although":[18],"recent":[19],"advances":[20],"have":[21],"improved":[22],"identification":[24],"genomic":[30],"research,":[31],"there":[32],"is":[33,145,160],"no":[34],"computational":[35,78],"method":[36,149],"specific":[37],"for":[38,83,88,107,150,163],"frameshift":[41,51,86,93,140,154],"indels":[42,141,155],"(insertions":[43],"or/and":[44],"deletions)":[45],"yet.":[46],"In":[47,72],"addition,":[48],"existing":[49,133],"pathogenic":[50],"indel":[52],"predictors":[53],"may":[54],"suffer":[55],"plenty":[57],"missing":[59],"values":[60],"because":[61],"different":[63],"choices":[64],"transcripts":[66],"during":[67],"variant":[69],"annotation":[70],"processes.":[71],"this":[73],"study,":[74],"we":[75],"proposed":[76],"model,":[79],"called":[80],"PredCID":[81,125,159],"(Predictor":[82],"Cancer":[84],"InDels),":[87],"accurately":[89],"predicting":[90],"indels.":[94],"Gene,":[95],"DNA,":[96],"transcript":[97],"and":[98,105,120,128,144],"protein":[99],"level":[100],"features":[101],"are":[102],"combined":[103],"together":[104],"selected":[106],"classification":[108],"with":[109,132],"eXtreme":[110],"Gradient":[111],"Boosting":[112],"classifier.":[113],"Benchmarking":[114],"results":[115],"on":[116],"cross-validation":[118],"dataset":[119,122],"independent":[121],"showed":[123],"that":[124],"achieves":[126],"better":[127],"robust":[129],"performance":[130],"compared":[131],"noncancer-specific":[134],"methods":[135],"distinguishing":[137],"passengers":[143],"therefore":[146],"valuable":[148],"deeper":[151],"understanding":[152],"human":[157],"cancer.":[158],"freely":[161],"available":[162],"academic":[164],"research":[165],"at":[166],"http://bioinfo.ahu.edu.cn:8080/PredCID.":[167]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":9},{"year":2020,"cited_by_count":10}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
