{"id":"https://openalex.org/W3036113864","doi":"https://doi.org/10.1093/bib/bbaa101","title":"Epidemiological data analysis of viral quasispecies in the next-generation sequencing era","display_name":"Epidemiological data analysis of viral quasispecies in the next-generation sequencing era","publication_year":2020,"publication_date":"2020-05-30","ids":{"openalex":"https://openalex.org/W3036113864","doi":"https://doi.org/10.1093/bib/bbaa101","mag":"3036113864","pmid":"https://pubmed.ncbi.nlm.nih.gov/32568371"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbaa101","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbaa101","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8485218","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5108272388","display_name":"Sergey Knyazev","orcid":null},"institutions":[{"id":"https://openalex.org/I181565077","display_name":"Georgia State University","ror":"https://ror.org/03qt6ba18","country_code":"US","type":"education","lineage":["https://openalex.org/I181565077"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sergey Knyazev","raw_affiliation_strings":["Georgia State University, Atlanta, GA, USA"],"affiliations":[{"raw_affiliation_string":"Georgia State University, Atlanta, GA, USA","institution_ids":["https://openalex.org/I181565077"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102707762","display_name":"Lauren S. Hughes","orcid":"https://orcid.org/0000-0001-7419-5742"},"institutions":[{"id":"https://openalex.org/I165733156","display_name":"University of Georgia","ror":"https://ror.org/00te3t702","country_code":"US","type":"education","lineage":["https://openalex.org/I165733156"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lauren Hughes","raw_affiliation_strings":["University of Georgia, Athens, GA, USA"],"affiliations":[{"raw_affiliation_string":"University of Georgia, Athens, GA, USA","institution_ids":["https://openalex.org/I165733156"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052456631","display_name":"Pavel Skums","orcid":"https://orcid.org/0000-0003-4007-5624"},"institutions":[{"id":"https://openalex.org/I291386647","display_name":"Belarusian State University","ror":"https://ror.org/021036w13","country_code":"BY","type":"education","lineage":["https://openalex.org/I291386647"]}],"countries":["BY"],"is_corresponding":false,"raw_author_name":"Pavel Skums","raw_affiliation_strings":["Belarusian State University"],"affiliations":[{"raw_affiliation_string":"Belarusian State University","institution_ids":["https://openalex.org/I291386647"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5072751459","display_name":"Alex Zelikovsky","orcid":"https://orcid.org/0000-0003-4424-4691"},"institutions":[{"id":"https://openalex.org/I291386647","display_name":"Belarusian State University","ror":"https://ror.org/021036w13","country_code":"BY","type":"education","lineage":["https://openalex.org/I291386647"]}],"countries":["BY"],"is_corresponding":true,"raw_author_name":"Alexander Zelikovsky","raw_affiliation_strings":["Belarusian State University"],"affiliations":[{"raw_affiliation_string":"Belarusian State University","institution_ids":["https://openalex.org/I291386647"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5072751459"],"corresponding_institution_ids":["https://openalex.org/I291386647"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":6.8834,"has_fulltext":false,"cited_by_count":71,"citation_normalized_percentile":{"value":0.97469478,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"22","issue":"1","first_page":"96","last_page":"108"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11135","display_name":"Virology and Viral Diseases","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11764","display_name":"Evolution and Genetic Dynamics","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/viral-quasispecies","display_name":"Viral quasispecies","score":0.9526042938232422},{"id":"https://openalex.org/keywords/virology","display_name":"Virology","score":0.509568452835083},{"id":"https://openalex.org/keywords/epidemiology","display_name":"Epidemiology","score":0.49382147192955017},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4858071804046631},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.48382678627967834},{"id":"https://openalex.org/keywords/coronavirus-disease-2019","display_name":"Coronavirus disease 2019 (COVID-19)","score":0.41349637508392334},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.38010844588279724},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.28764235973358154},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.2190665602684021},{"id":"https://openalex.org/keywords/virus","display_name":"Virus","score":0.19443801045417786},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.12552493810653687},{"id":"https://openalex.org/keywords/infectious-disease","display_name":"Infectious disease (medical specialty)","score":0.059125691652297974}],"concepts":[{"id":"https://openalex.org/C14500911","wikidata":"https://www.wikidata.org/wiki/Q3413375","display_name":"Viral quasispecies","level":4,"score":0.9526042938232422},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.509568452835083},{"id":"https://openalex.org/C107130276","wikidata":"https://www.wikidata.org/wiki/Q133805","display_name":"Epidemiology","level":2,"score":0.49382147192955017},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4858071804046631},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.48382678627967834},{"id":"https://openalex.org/C3008058167","wikidata":"https://www.wikidata.org/wiki/Q84263196","display_name":"Coronavirus disease 2019 (COVID-19)","level":4,"score":0.41349637508392334},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.38010844588279724},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.28764235973358154},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.2190665602684021},{"id":"https://openalex.org/C2522874641","wikidata":"https://www.wikidata.org/wiki/Q808","display_name":"Virus","level":2,"score":0.19443801045417786},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.12552493810653687},{"id":"https://openalex.org/C524204448","wikidata":"https://www.wikidata.org/wiki/Q788926","display_name":"Infectious disease (medical specialty)","level":3,"score":0.059125691652297974},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.0},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.0},{"id":"https://openalex.org/C2776408679","wikidata":"https://www.wikidata.org/wiki/Q708693","display_name":"Hepatitis C virus","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012327","descriptor_name":"RNA Virus Infections","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":false},{"descriptor_ui":"D012327","descriptor_name":"RNA Virus Infections","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":false},{"descriptor_ui":"D012327","descriptor_name":"RNA Virus Infections","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":false},{"descriptor_ui":"D012327","descriptor_name":"RNA Virus Infections","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":false},{"descriptor_ui":"D012327","descriptor_name":"RNA Virus Infections","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":false},{"descriptor_ui":"D012327","descriptor_name":"RNA Virus Infections","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D012327","descriptor_name":"RNA Virus Infections","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D012327","descriptor_name":"RNA Virus Infections","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D012327","descriptor_name":"RNA Virus Infections","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D012327","descriptor_name":"RNA Virus Infections","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D012328","descriptor_name":"RNA Viruses","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D012328","descriptor_name":"RNA Viruses","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D012328","descriptor_name":"RNA Viruses","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D012328","descriptor_name":"RNA Viruses","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D012328","descriptor_name":"RNA Viruses","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D012328","descriptor_name":"RNA Viruses","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012328","descriptor_name":"RNA Viruses","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012328","descriptor_name":"RNA Viruses","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012328","descriptor_name":"RNA Viruses","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012328","descriptor_name":"RNA Viruses","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012328","descriptor_name":"RNA Viruses","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":false},{"descriptor_ui":"D012328","descriptor_name":"RNA Viruses","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":false},{"descriptor_ui":"D012328","descriptor_name":"RNA Viruses","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":false},{"descriptor_ui":"D012328","descriptor_name":"RNA Viruses","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":false},{"descriptor_ui":"D012328","descriptor_name":"RNA Viruses","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":false},{"descriptor_ui":"D012328","descriptor_name":"RNA Viruses","qualifier_ui":"Q000472","qualifier_name":"pathogenicity","is_major_topic":false},{"descriptor_ui":"D012328","descriptor_name":"RNA Viruses","qualifier_ui":"Q000472","qualifier_name":"pathogenicity","is_major_topic":false},{"descriptor_ui":"D012328","descriptor_name":"RNA Viruses","qualifier_ui":"Q000472","qualifier_name":"pathogenicity","is_major_topic":false},{"descriptor_ui":"D012328","descriptor_name":"RNA Viruses","qualifier_ui":"Q000472","qualifier_name":"pathogenicity","is_major_topic":false},{"descriptor_ui":"D012328","descriptor_name":"RNA Viruses","qualifier_ui":"Q000472","qualifier_name":"pathogenicity","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D062665","descriptor_name":"Epidemiological Monitoring","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D062665","descriptor_name":"Epidemiological Monitoring","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D062665","descriptor_name":"Epidemiological Monitoring","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D062665","descriptor_name":"Epidemiological Monitoring","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D062665","descriptor_name":"Epidemiological Monitoring","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bib/bbaa101","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbaa101","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:32568371","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32568371","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:7379086","is_oa":false,"landing_page_url":"http://europepmc.org/pmc/articles/PMC8485218","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:8485218","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8485218","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:8485218","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8485218","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.8100000023841858,"display_name":"Good health and well-being"}],"awards":[{"id":"https://openalex.org/G1872296019","display_name":null,"funder_award_id":"R01","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":172,"referenced_works":["https://openalex.org/W136988059","https://openalex.org/W1487612538","https://openalex.org/W1565354039","https://openalex.org/W1656291587","https://openalex.org/W1753162123","https://openalex.org/W1791325077","https://openalex.org/W1826210767","https://openalex.org/W1840434126","https://openalex.org/W1878374750","https://openalex.org/W1884817196","https://openalex.org/W1952205832","https://openalex.org/W1964807436","https://openalex.org/W1977852362","https://openalex.org/W1984399867","https://openalex.org/W1986420798","https://openalex.org/W1988215875","https://openalex.org/W1993577356","https://openalex.org/W2012069101","https://openalex.org/W2023918737","https://openalex.org/W2025161234","https://openalex.org/W2027969303","https://openalex.org/W2029687992","https://openalex.org/W2032308407","https://openalex.org/W2032847961","https://openalex.org/W2034981907","https://openalex.org/W2036441818","https://openalex.org/W2037436102","https://openalex.org/W2037809979","https://openalex.org/W2045979783","https://openalex.org/W2048253923","https://openalex.org/W2055041101","https://openalex.org/W2057977668","https://openalex.org/W2059041686","https://openalex.org/W2060919531","https://openalex.org/W2063244493","https://openalex.org/W2063797600","https://openalex.org/W2064930197","https://openalex.org/W2065256070","https://openalex.org/W2067925490","https://openalex.org/W2079646032","https://openalex.org/W2080723129","https://openalex.org/W2083928639","https://openalex.org/W2085784506","https://openalex.org/W2086178905","https://openalex.org/W2098439468","https://openalex.org/W2099677871","https://openalex.org/W2104699261","https://openalex.org/W2105145583","https://openalex.org/W2105656400","https://openalex.org/W2108364055","https://openalex.org/W2110233077","https://openalex.org/W2119080212","https://openalex.org/W2128029944","https://openalex.org/W2128868625","https://openalex.org/W2129141072","https://openalex.org/W2129560802","https://openalex.org/W2133773193","https://openalex.org/W2133979592","https://openalex.org/W2134007392","https://openalex.org/W2134053782","https://openalex.org/W2146397496","https://openalex.org/W2148686896","https://openalex.org/W2153163225","https://openalex.org/W2154164013","https://openalex.org/W2156117787","https://openalex.org/W2157053750","https://openalex.org/W2158875278","https://openalex.org/W2159021003","https://openalex.org/W2161221967","https://openalex.org/W2161815151","https://openalex.org/W2163314170","https://openalex.org/W2163326395","https://openalex.org/W2169790816","https://openalex.org/W2170765088","https://openalex.org/W2170776372","https://openalex.org/W2171475724","https://openalex.org/W2171750584","https://openalex.org/W2191957520","https://openalex.org/W2259815689","https://openalex.org/W2280128538","https://openalex.org/W2280931876","https://openalex.org/W2288266106","https://openalex.org/W2292461890","https://openalex.org/W2294528210","https://openalex.org/W2295808945","https://openalex.org/W2305932671","https://openalex.org/W2336086067","https://openalex.org/W2340000132","https://openalex.org/W2411891913","https://openalex.org/W2464337925","https://openalex.org/W2494835558","https://openalex.org/W2504850725","https://openalex.org/W2516334661","https://openalex.org/W2518796932","https://openalex.org/W2524622036","https://openalex.org/W2527990262","https://openalex.org/W2553990959","https://openalex.org/W2560468658","https://openalex.org/W2560986453","https://openalex.org/W2600733381","https://openalex.org/W2604122097","https://openalex.org/W2615098984","https://openalex.org/W2616925143","https://openalex.org/W2618599520","https://openalex.org/W2638023010","https://openalex.org/W2656912978","https://openalex.org/W2735029156","https://openalex.org/W2738888826","https://openalex.org/W2742727973","https://openalex.org/W2764031498","https://openalex.org/W2767089427","https://openalex.org/W2772837219","https://openalex.org/W2773187618","https://openalex.org/W2789208418","https://openalex.org/W2791212039","https://openalex.org/W2793085614","https://openalex.org/W2794342534","https://openalex.org/W2794463326","https://openalex.org/W2794566078","https://openalex.org/W2795049082","https://openalex.org/W2802689071","https://openalex.org/W2804358107","https://openalex.org/W2804624135","https://openalex.org/W2804873609","https://openalex.org/W2887818377","https://openalex.org/W2894393582","https://openalex.org/W2896615022","https://openalex.org/W2897254825","https://openalex.org/W2900583793","https://openalex.org/W2913450144","https://openalex.org/W2915273320","https://openalex.org/W2918580560","https://openalex.org/W2919556156","https://openalex.org/W2920472362","https://openalex.org/W2925595737","https://openalex.org/W2927292733","https://openalex.org/W2938533346","https://openalex.org/W2942507461","https://openalex.org/W2945440572","https://openalex.org/W2946778829","https://openalex.org/W2949491511","https://openalex.org/W2952045272","https://openalex.org/W2952626522","https://openalex.org/W2964155075","https://openalex.org/W2980190037","https://openalex.org/W2985357596","https://openalex.org/W2991927845","https://openalex.org/W2998431497","https://openalex.org/W3009109635","https://openalex.org/W3009934907","https://openalex.org/W3011504053","https://openalex.org/W3012414418","https://openalex.org/W3112750589","https://openalex.org/W3117962311","https://openalex.org/W3187962553","https://openalex.org/W4230982365","https://openalex.org/W4236479494","https://openalex.org/W4239568930","https://openalex.org/W4247904603","https://openalex.org/W4255821329","https://openalex.org/W4392543504","https://openalex.org/W6605527092","https://openalex.org/W6637606929","https://openalex.org/W6639193860","https://openalex.org/W6639451161","https://openalex.org/W6671380356","https://openalex.org/W6685352449","https://openalex.org/W6686825414","https://openalex.org/W6703155622","https://openalex.org/W6750457539","https://openalex.org/W6762466173","https://openalex.org/W6770223948"],"related_works":["https://openalex.org/W2899084033","https://openalex.org/W2370565492","https://openalex.org/W2016766059","https://openalex.org/W2029741357","https://openalex.org/W2144907742","https://openalex.org/W1748700469","https://openalex.org/W2009366069","https://openalex.org/W2620872782","https://openalex.org/W2412948090","https://openalex.org/W2472738690"],"abstract_inverted_index":{"The":[0],"unprecedented":[1,24],"coverage":[2],"offered":[3],"by":[4],"next-generation":[5],"sequencing":[6,109],"(NGS)":[7],"technology":[8],"has":[9],"facilitated":[10],"the":[11,14,46,57,98,118,125],"assessment":[12],"of":[13,17,26,30,48,59,78,90,127,145,150,168,186,190,210],"population":[15,171],"complexity":[16,172],"intra-host":[18,169],"RNA":[19],"viral":[20,131,170],"populations":[21],"at":[22],"an":[23],"level":[25],"detail.":[27],"Consequently,":[28],"analysis":[29,86,183],"NGS":[31,82,99,120,163],"datasets":[32,121],"could":[33],"be":[34,114],"used":[35],"to":[36,97,116,142],"extract":[37],"and":[38,42,52,64,76,102,122,156,177,184,192,196,200,208],"infer":[39],"crucial":[40],"epidemiological":[41,101,135,182],"biomedical":[43],"information":[44,68],"on":[45],"levels":[47],"both":[49],"infected":[50],"individuals":[51],"susceptible":[53],"populations,":[54],"thus":[55],"enabling":[56],"development":[58],"more":[60],"effective":[61],"prevention":[62],"strategies":[63],"antiviral":[65],"therapeutics.":[66],"Such":[67],"includes":[69],"drug":[70],"resistance,":[71],"infection":[72,191],"stage,":[73],"transmission":[74,79],"clusters":[75],"structures":[77],"networks.":[80],"However,":[81],"data":[83,140,164,198],"require":[84,138],"sophisticated":[85],"dealing":[87],"with":[88],"millions":[89,144],"error-prone":[91],"short":[92],"reads":[93,146],"per":[94],"patient.":[95],"Prior":[96],"era,":[100],"phylogenetic":[103],"analyses":[104],"were":[105],"geared":[106],"toward":[107],"Sanger":[108],"technology;":[110],"now,":[111],"they":[112],"must":[113],"redesigned":[115],"handle":[117,143],"large-scale":[119],"properly":[123],"model":[124],"evolution":[126],"heterogeneous":[128],"rapidly":[129],"mutating":[130],"populations.":[132],"Additionally,":[133],"dedicated":[134],"surveillance":[136,203],"systems":[137,204],"big":[139],"analytics":[141,201],"obtained":[147],"from":[148],"thousands":[149],"patients":[151],"for":[152,165,205],"rapid":[153],"outbreak":[154],"investigation":[155],"management.":[157],"We":[158],"survey":[159],"bioinformatics":[160],"tools":[161],"analyzing":[162],"(i)":[166],"characterization":[167],"including":[173],"single":[174],"nucleotide":[175],"variant":[176],"haplotype":[178],"calling;":[179],"(ii)":[180],"downstream":[181],"inference":[185],"drug-resistant":[187],"mutations,":[188],"age":[189],"linkage":[193],"between":[194],"patients;":[195],"(iii)":[197],"collection":[199],"in":[202],"fast":[206],"response":[207],"control":[209],"outbreaks.":[211]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":17},{"year":2023,"cited_by_count":7},{"year":2022,"cited_by_count":16},{"year":2021,"cited_by_count":13},{"year":2020,"cited_by_count":7},{"year":2018,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-03-18T14:38:29.013473","created_date":"2025-10-10T00:00:00"}
