{"id":"https://openalex.org/W3022519641","doi":"https://doi.org/10.1093/bib/bbaa071","title":"RSVdb: a comprehensive database of transcriptome RNA structure","display_name":"RSVdb: a comprehensive database of transcriptome RNA structure","publication_year":2020,"publication_date":"2020-04-08","ids":{"openalex":"https://openalex.org/W3022519641","doi":"https://doi.org/10.1093/bib/bbaa071","mag":"3022519641"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbaa071","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbaa071","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5077790956","display_name":"Haopeng Yu","orcid":"https://orcid.org/0000-0002-5184-2430"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Haopeng Yu","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091157986","display_name":"Yi Zhang","orcid":"https://orcid.org/0000-0003-4011-7943"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Yi Zhang","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101487846","display_name":"Qing Sun","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Qing Sun","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028842276","display_name":"Huijie Gao","orcid":"https://orcid.org/0000-0001-5029-6573"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Huijie Gao","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5081501610","display_name":"Shiheng Tao","orcid":"https://orcid.org/0000-0002-6076-6038"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Shiheng Tao","raw_affiliation_strings":[],"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5077790956"],"corresponding_institution_ids":[],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":0.4143,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.58963628,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"22","issue":"3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.7917822599411011},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.7849792838096619},{"id":"https://openalex.org/keywords/nucleic-acid-structure","display_name":"Nucleic acid structure","score":0.6217777729034424},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5978172421455383},{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.5799933671951294},{"id":"https://openalex.org/keywords/rna-seq","display_name":"RNA-Seq","score":0.43877673149108887},{"id":"https://openalex.org/keywords/non-coding-rna","display_name":"Non-coding RNA","score":0.4209993779659271},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3931492865085602},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3825666606426239},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3587777018547058},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.35230493545532227},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.23298880457878113},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2176259458065033}],"concepts":[{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.7917822599411011},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.7849792838096619},{"id":"https://openalex.org/C126142528","wikidata":"https://www.wikidata.org/wiki/Q3771876","display_name":"Nucleic acid structure","level":4,"score":0.6217777729034424},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5978172421455383},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.5799933671951294},{"id":"https://openalex.org/C107397762","wikidata":"https://www.wikidata.org/wiki/Q2542347","display_name":"RNA-Seq","level":5,"score":0.43877673149108887},{"id":"https://openalex.org/C194993378","wikidata":"https://www.wikidata.org/wiki/Q427087","display_name":"Non-coding RNA","level":4,"score":0.4209993779659271},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3931492865085602},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3825666606426239},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3587777018547058},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.35230493545532227},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.23298880457878113},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2176259458065033}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1093/bib/bbaa071","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbaa071","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15","score":0.6000000238418579}],"awards":[{"id":"https://openalex.org/G8142843719","display_name":null,"funder_award_id":"31771474","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":39,"referenced_works":["https://openalex.org/W52783179","https://openalex.org/W1259363667","https://openalex.org/W1429519121","https://openalex.org/W1512118256","https://openalex.org/W1551812998","https://openalex.org/W1970827552","https://openalex.org/W1979048982","https://openalex.org/W1980272310","https://openalex.org/W2003993220","https://openalex.org/W2004945910","https://openalex.org/W2071883352","https://openalex.org/W2076091642","https://openalex.org/W2098571862","https://openalex.org/W2110436930","https://openalex.org/W2124162379","https://openalex.org/W2129726167","https://openalex.org/W2136723246","https://openalex.org/W2146193195","https://openalex.org/W2154431984","https://openalex.org/W2156607060","https://openalex.org/W2395625908","https://openalex.org/W2501900207","https://openalex.org/W2550814712","https://openalex.org/W2554920439","https://openalex.org/W2583817197","https://openalex.org/W2625461439","https://openalex.org/W2746943868","https://openalex.org/W2747525857","https://openalex.org/W2793097545","https://openalex.org/W2803934693","https://openalex.org/W2805982776","https://openalex.org/W2810523701","https://openalex.org/W2884297880","https://openalex.org/W2946341725","https://openalex.org/W2952214797","https://openalex.org/W6602153931","https://openalex.org/W6727119731","https://openalex.org/W6743705418","https://openalex.org/W6964115956"],"related_works":["https://openalex.org/W4394359997","https://openalex.org/W4362511652","https://openalex.org/W4362511917","https://openalex.org/W4362511922","https://openalex.org/W4362485688","https://openalex.org/W4362530184","https://openalex.org/W4362530193","https://openalex.org/W2904597490","https://openalex.org/W4362485661","https://openalex.org/W4394365953"],"abstract_inverted_index":{"Abstract":[0],"RNA":[1,14,30,50,102,111,125,138,149],"fulfills":[2],"a":[3,12,18,39,135],"crucial":[4],"regulatory":[5],"role":[6],"in":[7,64,113],"cells":[8],"by":[9],"folding":[10],"into":[11],"complex":[13],"structure.":[15],"To":[16],"date,":[17],"chemical":[19],"compound,":[20],"dimethyl":[21],"sulfate":[22],"(DMS),":[23],"has":[24],"been":[25],"developed":[26],"to":[27],"probe":[28],"the":[29,33,44,92,146,152],"structure":[31,75,103,126,139,150],"at":[32,151],"transcriptome":[34,49,153],"level":[35],"effectively.":[36],"We":[37],"proposed":[38],"database,":[40],"RSVdb":[41,133],"(https://taolab.nwafu.edu.cn/rsvdb/),":[42],"for":[43,83,128,137],"browsing":[45],"and":[46,77,87,98,106,115,123,130,140],"visualization":[47],"of":[48,89,95,101,110,119,148],"structures.":[51],"RSVdb,":[52],"including":[53],"626":[54],"225":[55],"RNAs":[56],"with":[57],"validated":[58],"DMS":[59,117],"reactivity":[60],"from":[61],"178":[62],"samples":[63],"eight":[65],"species,":[66,84],"supports":[67],"four":[68],"main":[69],"functions:":[70],"information":[71],"retrieval,":[72],"research":[73,144],"overview,":[74],"prediction":[76,109],"resource":[78],"download.":[79],"Users":[80],"can":[81],"search":[82],"studies,":[85],"transcripts":[86],"genes":[88],"interest;":[90],"browse":[91],"quality":[93],"control":[94],"sequencing":[96],"data":[97,127],"statistical":[99],"charts":[100],"information;":[104],"preview":[105],"perform":[107],"online":[108],"structures":[112],"silico":[114],"under":[116],"restraint":[118],"different":[120],"experimental":[121],"treatments":[122],"download":[124],"species":[129],"studies.":[131],"Together,":[132],"provides":[134],"reference":[136],"will":[141],"support":[142],"future":[143],"on":[145],"function":[147],"level.":[154]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":3},{"year":2020,"cited_by_count":2}],"updated_date":"2025-11-23T05:10:03.516525","created_date":"2020-05-13T00:00:00"}