{"id":"https://openalex.org/W3028912875","doi":"https://doi.org/10.1093/bib/bbaa068","title":"Systematic evaluation of machine learning methods for identifying human\u2013pathogen protein\u2013protein interactions","display_name":"Systematic evaluation of machine learning methods for identifying human\u2013pathogen protein\u2013protein interactions","publication_year":2020,"publication_date":"2020-04-01","ids":{"openalex":"https://openalex.org/W3028912875","doi":"https://doi.org/10.1093/bib/bbaa068","mag":"3028912875","pmid":"https://pubmed.ncbi.nlm.nih.gov/32459334"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbaa068","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbaa068","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101987301","display_name":"Huaming Chen","orcid":"https://orcid.org/0000-0001-5678-472X"},"institutions":[{"id":"https://openalex.org/I204824540","display_name":"University of Wollongong","ror":"https://ror.org/00jtmb277","country_code":"AU","type":"education","lineage":["https://openalex.org/I204824540"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Huaming Chen","raw_affiliation_strings":["Faculty of Engineering and Information Science, School of Computing and Information Technology, University of Wollongong, NSW 2522, Australia;"],"affiliations":[{"raw_affiliation_string":"Faculty of Engineering and Information Science, School of Computing and Information Technology, University of Wollongong, NSW 2522, Australia;","institution_ids":["https://openalex.org/I204824540"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063409460","display_name":"Fuyi Li","orcid":"https://orcid.org/0000-0001-5216-3213"},"institutions":[{"id":"https://openalex.org/I56590836","display_name":"Monash University","ror":"https://ror.org/02bfwt286","country_code":"AU","type":"education","lineage":["https://openalex.org/I56590836"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Fuyi Li","raw_affiliation_strings":["Monash Biomedicine Discovery Institute and Department of Biochemistry and Molecular Biology, Monash University, Melbourne, VIC 3800, Australia;","Monash Centre for Data Science, Faculty of Information Technology, Monash University, Melbourne, VIC 3800, Australia;"],"affiliations":[{"raw_affiliation_string":"Monash Biomedicine Discovery Institute and Department of Biochemistry and Molecular Biology, Monash University, Melbourne, VIC 3800, Australia;","institution_ids":["https://openalex.org/I56590836"]},{"raw_affiliation_string":"Monash Centre for Data Science, Faculty of Information Technology, Monash University, Melbourne, VIC 3800, Australia;","institution_ids":["https://openalex.org/I56590836"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100436059","display_name":"Lei Wang","orcid":"https://orcid.org/0000-0003-0184-307X"},"institutions":[{"id":"https://openalex.org/I204824540","display_name":"University of Wollongong","ror":"https://ror.org/00jtmb277","country_code":"AU","type":"education","lineage":["https://openalex.org/I204824540"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Lei Wang","raw_affiliation_strings":["Faculty of Engineering and Information Science, School of Computing and Information Technology, University of Wollongong, NSW 2522, Australia;"],"affiliations":[{"raw_affiliation_string":"Faculty of Engineering and Information Science, School of Computing and Information Technology, University of Wollongong, NSW 2522, Australia;","institution_ids":["https://openalex.org/I204824540"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032314861","display_name":"Yaochu Jin","orcid":"https://orcid.org/0000-0003-1100-0631"},"institutions":[{"id":"https://openalex.org/I28290843","display_name":"University of Surrey","ror":"https://ror.org/00ks66431","country_code":"GB","type":"education","lineage":["https://openalex.org/I28290843"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Yaochu Jin","raw_affiliation_strings":["Department of Computer Science, University of Surrey, Guildford, Surrey GU2 7XH, United Kingdom;"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Surrey, Guildford, Surrey GU2 7XH, United Kingdom;","institution_ids":["https://openalex.org/I28290843"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058644115","display_name":"Chi\u2010Hung Chi","orcid":"https://orcid.org/0000-0001-7271-1926"},"institutions":[{"id":"https://openalex.org/I42894916","display_name":"Data61","ror":"https://ror.org/03q397159","country_code":"AU","type":"other","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I42894916","https://openalex.org/I4387156119"]},{"id":"https://openalex.org/I1292875679","display_name":"Commonwealth Scientific and Industrial Research Organisation","ror":"https://ror.org/03qn8fb07","country_code":"AU","type":"funder","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I4387156119"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Chi-Hung Chi","raw_affiliation_strings":["Data61, Commonwealth Scientific and Industrial Research Organization (CSIRO), Sandy Bay, TAS 7005, Australia;"],"affiliations":[{"raw_affiliation_string":"Data61, Commonwealth Scientific and Industrial Research Organization (CSIRO), Sandy Bay, TAS 7005, Australia;","institution_ids":["https://openalex.org/I1292875679","https://openalex.org/I42894916"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088423732","display_name":"Lukasz Kurgan","orcid":"https://orcid.org/0000-0002-7749-0314"},"institutions":[{"id":"https://openalex.org/I184840846","display_name":"Virginia Commonwealth University","ror":"https://ror.org/02nkdxk79","country_code":"US","type":"education","lineage":["https://openalex.org/I184840846"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lukasz Kurgan","raw_affiliation_strings":["Department of Computer Science, Virginia Commonwealth University, 401 West Main Street, Room E4225, Richmond, VA 23284, USA;"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Virginia Commonwealth University, 401 West Main Street, Room E4225, Richmond, VA 23284, USA;","institution_ids":["https://openalex.org/I184840846"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012709797","display_name":"Jiangning Song","orcid":"https://orcid.org/0000-0001-8031-9086"},"institutions":[{"id":"https://openalex.org/I56590836","display_name":"Monash University","ror":"https://ror.org/02bfwt286","country_code":"AU","type":"education","lineage":["https://openalex.org/I56590836"]},{"id":"https://openalex.org/I4210146297","display_name":"ARC Centre of Excellence in Advanced Molecular Imaging","ror":"https://ror.org/051e7s436","country_code":"AU","type":"facility","lineage":["https://openalex.org/I1337719021","https://openalex.org/I2801453606","https://openalex.org/I4210132349","https://openalex.org/I4210146297","https://openalex.org/I56590836"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Jiangning Song","raw_affiliation_strings":["Monash Centre for Data Science, Faculty of Information Technology, Monash University, Melbourne, VIC 3800, Australia;","Monash Biomedicine Discovery Institute and Department of Biochemistry and Molecular Biology, Monash University, Melbourne, VIC 3800, Australia;","ARC Centre of Excellence in Advanced Molecular Imaging, Monash University, Melbourne, VIC 3800, Australia"],"affiliations":[{"raw_affiliation_string":"Monash Centre for Data Science, Faculty of Information Technology, Monash University, Melbourne, VIC 3800, Australia;","institution_ids":["https://openalex.org/I56590836"]},{"raw_affiliation_string":"Monash Biomedicine Discovery Institute and Department of Biochemistry and Molecular Biology, Monash University, Melbourne, VIC 3800, Australia;","institution_ids":["https://openalex.org/I56590836"]},{"raw_affiliation_string":"ARC Centre of Excellence in Advanced Molecular Imaging, Monash University, Melbourne, VIC 3800, Australia","institution_ids":["https://openalex.org/I4210146297","https://openalex.org/I56590836"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5031318875","display_name":"Jun Shen","orcid":"https://orcid.org/0000-0002-9403-7140"},"institutions":[{"id":"https://openalex.org/I204824540","display_name":"University of Wollongong","ror":"https://ror.org/00jtmb277","country_code":"AU","type":"education","lineage":["https://openalex.org/I204824540"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Jun Shen","raw_affiliation_strings":["Faculty of Engineering and Information Science, School of Computing and Information Technology, University of Wollongong, NSW 2522, Australia;"],"affiliations":[{"raw_affiliation_string":"Faculty of Engineering and Information Science, School of Computing and Information Technology, University of Wollongong, NSW 2522, Australia;","institution_ids":["https://openalex.org/I204824540"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5101987301"],"corresponding_institution_ids":["https://openalex.org/I204824540"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":3.5937,"has_fulltext":false,"cited_by_count":61,"citation_normalized_percentile":{"value":0.9408287,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"22","issue":"3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.986299991607666,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9840999841690063,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7391902804374695},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.7001978158950806},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.621597409248352},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5994798541069031},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5532151460647583},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.5025789737701416},{"id":"https://openalex.org/keywords/protein-sequencing","display_name":"Protein sequencing","score":0.48599013686180115},{"id":"https://openalex.org/keywords/host","display_name":"Host (biology)","score":0.4356543719768524},{"id":"https://openalex.org/keywords/protein\u2013protein-interaction","display_name":"Protein\u2013protein interaction","score":0.4320474863052368},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.4142794609069824},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.34197232127189636},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.19045305252075195},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1487598419189453}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7391902804374695},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.7001978158950806},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.621597409248352},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5994798541069031},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5532151460647583},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.5025789737701416},{"id":"https://openalex.org/C10010492","wikidata":"https://www.wikidata.org/wiki/Q3142557","display_name":"Protein sequencing","level":4,"score":0.48599013686180115},{"id":"https://openalex.org/C126831891","wikidata":"https://www.wikidata.org/wiki/Q221673","display_name":"Host (biology)","level":2,"score":0.4356543719768524},{"id":"https://openalex.org/C11804247","wikidata":"https://www.wikidata.org/wiki/Q896177","display_name":"Protein\u2013protein interaction","level":2,"score":0.4320474863052368},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.4142794609069824},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.34197232127189636},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.19045305252075195},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1487598419189453},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D054884","descriptor_name":"Host-Pathogen Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054884","descriptor_name":"Host-Pathogen Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054884","descriptor_name":"Host-Pathogen Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":8,"locations":[{"id":"doi:10.1093/bib/bbaa068","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbaa068","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:32459334","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32459334","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:alma.44SUR_INST:11139555630002346","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4210197018","display_name":"View","issn_l":"2688-268X","issn":["2688-268X","2688-3988"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320595","host_organization_name":"Wiley","host_organization_lineage":["https://openalex.org/P4310320595"],"host_organization_lineage_names":["Wiley"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"","raw_type":""},{"id":"pmh:oai:ro.uow.edu.au:eispapers1-5189","is_oa":false,"landing_page_url":"https://ro.uow.edu.au/eispapers1/4162","pdf_url":null,"source":{"id":"https://openalex.org/S4306400510","display_name":"Research Online (University of Wollongong)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I204824540","host_organization_name":"University of Wollongong","host_organization_lineage":["https://openalex.org/I204824540"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Faculty of Engineering and Information Sciences - Papers: Part B","raw_type":"article"},{"id":"pmh:oai:ro.uow.edu.au:test2021-3991","is_oa":false,"landing_page_url":"https://ro.uow.edu.au/test2021/2982","pdf_url":null,"source":{"id":"https://openalex.org/S4306400510","display_name":"Research Online (University of Wollongong)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I204824540","host_organization_name":"University of Wollongong","host_organization_lineage":["https://openalex.org/I204824540"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Test Series for Scopus Harvesting 2021","raw_type":"text"},{"id":"pmh:oai:digital.library.adelaide.edu.au:2440/133365","is_oa":false,"landing_page_url":"https://hdl.handle.net/2440/133365","pdf_url":null,"source":{"id":"https://openalex.org/S4306401835","display_name":"Adelaide Research & Scholarship (AR&S) (University of Adelaide)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I5681781","host_organization_name":"The University of Adelaide","host_organization_lineage":["https://openalex.org/I5681781"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://dx.doi.org/10.1093/bib/bbaa068","raw_type":"Journal article"},{"id":"pmh:oai:epubs.surrey.ac.uk:857011","is_oa":false,"landing_page_url":"https://epubs.surrey.ac.uk/857011/1/Chen_et_al_BIB_R1_0329%5B122016%5D.pdf","pdf_url":null,"source":{"id":"https://openalex.org/S4306400680","display_name":"Surrey Research Insight Open Access (The University of Surrey)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28290843","host_organization_name":"University of Surrey","host_organization_lineage":["https://openalex.org/I28290843"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:pub.uni-bielefeld.de:2978392","is_oa":false,"landing_page_url":"https://pub.uni-bielefeld.de/record/2978392","pdf_url":null,"source":{"id":"https://openalex.org/S4306401670","display_name":"PUB \u2013 Publications at Bielefeld University (Bielefeld University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I20121455","host_organization_name":"Bielefeld University","host_organization_lineage":["https://openalex.org/I20121455"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"http://purl.org/coar/resource_type/c_6501"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.6100000143051147,"display_name":"Decent work and economic growth","id":"https://metadata.un.org/sdg/8"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":131,"referenced_works":["https://openalex.org/W15750123","https://openalex.org/W24553703","https://openalex.org/W1543773936","https://openalex.org/W1678356000","https://openalex.org/W1953396020","https://openalex.org/W1967572918","https://openalex.org/W1979601325","https://openalex.org/W1981091069","https://openalex.org/W1982267716","https://openalex.org/W1986708244","https://openalex.org/W1998977002","https://openalex.org/W2009884897","https://openalex.org/W2025625539","https://openalex.org/W2026352429","https://openalex.org/W2026948602","https://openalex.org/W2027540422","https://openalex.org/W2028273907","https://openalex.org/W2030793934","https://openalex.org/W2032243072","https://openalex.org/W2034070267","https://openalex.org/W2035252561","https://openalex.org/W2036956828","https://openalex.org/W2038681300","https://openalex.org/W2039612769","https://openalex.org/W2042242664","https://openalex.org/W2047990563","https://openalex.org/W2048299923","https://openalex.org/W2052685738","https://openalex.org/W2053098819","https://openalex.org/W2056990767","https://openalex.org/W2059325738","https://openalex.org/W2062685052","https://openalex.org/W2070619727","https://openalex.org/W2077398039","https://openalex.org/W2079277579","https://openalex.org/W2087322782","https://openalex.org/W2092123736","https://openalex.org/W2092575282","https://openalex.org/W2095867585","https://openalex.org/W2101234009","https://openalex.org/W2103525038","https://openalex.org/W2115048111","https://openalex.org/W2118128448","https://openalex.org/W2118601386","https://openalex.org/W2118754867","https://openalex.org/W2119821739","https://openalex.org/W2124249167","https://openalex.org/W2125283600","https://openalex.org/W2125810455","https://openalex.org/W2127637605","https://openalex.org/W2131904035","https://openalex.org/W2132582966","https://openalex.org/W2139237500","https://openalex.org/W2141876630","https://openalex.org/W2142734829","https://openalex.org/W2143210482","https://openalex.org/W2143720865","https://openalex.org/W2145957695","https://openalex.org/W2147580225","https://openalex.org/W2147714160","https://openalex.org/W2152705149","https://openalex.org/W2154139219","https://openalex.org/W2156269526","https://openalex.org/W2158714788","https://openalex.org/W2159126118","https://openalex.org/W2165253681","https://openalex.org/W2168833259","https://openalex.org/W2272509401","https://openalex.org/W2311607323","https://openalex.org/W2465613542","https://openalex.org/W2481980459","https://openalex.org/W2528774686","https://openalex.org/W2572986783","https://openalex.org/W2592038517","https://openalex.org/W2595195543","https://openalex.org/W2604293371","https://openalex.org/W2722005050","https://openalex.org/W2757598598","https://openalex.org/W2758437023","https://openalex.org/W2766389776","https://openalex.org/W2771286954","https://openalex.org/W2783748519","https://openalex.org/W2789363643","https://openalex.org/W2790865507","https://openalex.org/W2793168264","https://openalex.org/W2800333284","https://openalex.org/W2800686208","https://openalex.org/W2807587597","https://openalex.org/W2810225085","https://openalex.org/W2810246703","https://openalex.org/W2887029338","https://openalex.org/W2890951984","https://openalex.org/W2894836881","https://openalex.org/W2900539462","https://openalex.org/W2905446269","https://openalex.org/W2909409778","https://openalex.org/W2911964244","https://openalex.org/W2915536738","https://openalex.org/W2918485792","https://openalex.org/W2922210059","https://openalex.org/W2936781144","https://openalex.org/W2938387327","https://openalex.org/W2949292019","https://openalex.org/W2965857891","https://openalex.org/W2967717440","https://openalex.org/W2967960129","https://openalex.org/W2970416468","https://openalex.org/W2971733377","https://openalex.org/W2972955359","https://openalex.org/W2977291005","https://openalex.org/W2981653858","https://openalex.org/W2986268970","https://openalex.org/W3105939760","https://openalex.org/W3144526075","https://openalex.org/W4210702584","https://openalex.org/W4231530219","https://openalex.org/W4239510810","https://openalex.org/W6652792221","https://openalex.org/W6669829439","https://openalex.org/W6675354045","https://openalex.org/W6679539681","https://openalex.org/W6685251001","https://openalex.org/W6698064614","https://openalex.org/W6728150723","https://openalex.org/W6740553298","https://openalex.org/W6744131369","https://openalex.org/W6744800648","https://openalex.org/W6760670895","https://openalex.org/W6766522092","https://openalex.org/W6766529888","https://openalex.org/W7074113416"],"related_works":["https://openalex.org/W2961085424","https://openalex.org/W4306674287","https://openalex.org/W2003790670","https://openalex.org/W1992065723","https://openalex.org/W1985222378","https://openalex.org/W2011478467","https://openalex.org/W2124463526","https://openalex.org/W3093878807","https://openalex.org/W4386727709","https://openalex.org/W2039465881"],"abstract_inverted_index":{"In":[0,79],"recent":[1],"years,":[2],"high-throughput":[3],"experimental":[4,25],"techniques":[5],"have":[6],"significantly":[7],"enhanced":[8],"the":[9,70,113,126,146,152,168,177,187,193,202,206,249],"accuracy":[10],"and":[11,36,58,65,74,109,128,175,192,208,219,230],"coverage":[12],"of":[13,33,46,72,87,103,107,115,170,179,189,196,216,226,234,253],"protein-protein":[14,19,94],"interaction":[15,77],"identification,":[16],"including":[17],"human-pathogen":[18],"interactions":[20,55,73,95],"(HP-PPIs).":[21],"Despite":[22],"this":[23,80],"progress,":[24],"methods":[26,52,91],"are,":[27],"in":[28,31,67,141],"general,":[29],"expensive":[30],"terms":[32],"both":[34,68],"time":[35],"labour":[37],"costs,":[38],"especially":[39],"considering":[40],"that":[41,133,162],"there":[42],"are":[43,242],"enormous":[44],"amounts":[45],"potential":[47],"protein-interacting":[48],"partners.":[49],"Developing":[50],"computational":[51,90,183],"to":[53,137,165,186,212],"predict":[54],"between":[56],"human":[57,144],"bacteria":[59],"pathogen":[60],"has":[61],"thus":[62],"become":[63],"critical":[64],"meaningful,":[66],"facilitating":[69],"detection":[71],"mining":[75],"incomplete":[76],"maps.":[78],"paper,":[81],"we":[82,123,149,163,200],"present":[83],"a":[84,100,143,213,231,245],"systematic":[85,224],"evaluation":[86,225,252],"machine":[88,181,220,227],"learning-based":[89],"for":[92],"human-bacterium":[93],"(HB-PPIs).":[96],"We":[97],"first":[98],"reviewed":[99,151],"vast":[101],"number":[102],"publicly":[104],"available":[105],"databases":[106],"HP-PPIs":[108],"then":[110],"critically":[111],"evaluate":[112,176],"availability":[114],"these":[116],"databases.":[117],"Benefitting":[118],"from":[119,205],"its":[120],"well-structured":[121],"nature,":[122],"subsequently":[124],"preprocess":[125],"data":[127],"identified":[129],"six":[130],"bacterium":[131,139],"pathogens":[132],"could":[134],"be":[135],"used":[136,164],"study":[138,167],"subjects":[140],"which":[142],"was":[145],"host.":[147],"Additionally,":[148],"thoroughly":[150],"literature":[153,207],"on":[154,239],"'host-pathogen":[155],"interactions'":[156],"whereby":[157],"existing":[158,180],"models":[159,229],"were":[160],"summarized":[161],"jointly":[166],"impact":[169],"different":[171],"feature":[172,235],"representation":[173,236],"algorithms":[174,237],"performance":[178,251],"learning":[182,221,228],"models.":[184,222],"Owing":[185],"abundance":[188],"sequence":[190,217,240],"information":[191,218,241],"limited":[194],"scale":[195],"other":[197],"protein-related":[198],"information,":[199],"adopted":[201],"primary":[203],"protocol":[204],"dedicated":[209],"our":[210],"analysis":[211],"comprehensive":[214],"assessment":[215],"A":[223],"wide":[232],"range":[233],"based":[238],"presented":[243],"as":[244],"comparison":[246],"survey":[247],"towards":[248],"prediction":[250],"HB-PPIs.":[254]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":10},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":27},{"year":2020,"cited_by_count":3}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
