{"id":"https://openalex.org/W3104015140","doi":"https://doi.org/10.1093/bib/bbaa054","title":"Biomedical named entity recognition and linking datasets: survey and our recent development","display_name":"Biomedical named entity recognition and linking datasets: survey and our recent development","publication_year":2020,"publication_date":"2020-06-29","ids":{"openalex":"https://openalex.org/W3104015140","doi":"https://doi.org/10.1093/bib/bbaa054","mag":"3104015140","pmid":"https://pubmed.ncbi.nlm.nih.gov/32602538"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbaa054","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbaa054","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5108729211","display_name":"Ming-Siang Huang","orcid":null},"institutions":[{"id":"https://openalex.org/I4210098366","display_name":"Institute of Information Science, Academia Sinica","ror":"https://ror.org/00z83z196","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210098366","https://openalex.org/I84653119"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Ming-Siang Huang","raw_affiliation_strings":["Bioinformatics Program, Taiwan International Graduate Program, Institute of Information Science, Academia Sinica, Taipei, Taiwan"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Program, Taiwan International Graduate Program, Institute of Information Science, Academia Sinica, Taipei, Taiwan","institution_ids":["https://openalex.org/I4210098366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113325465","display_name":"Po-Ting Lai","orcid":null},"institutions":[{"id":"https://openalex.org/I148366613","display_name":"National Yang Ming Chiao Tung University","ror":"https://ror.org/00se2k293","country_code":"TW","type":"education","lineage":["https://openalex.org/I148366613"]},{"id":"https://openalex.org/I4210087697","display_name":"National Yang Ming University Hospital","ror":"https://ror.org/003xdw211","country_code":"TW","type":"healthcare","lineage":["https://openalex.org/I4210087697"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Po-Ting Lai","raw_affiliation_strings":["Institute of Biomedical Informatics, National Yang Ming University, Taipei, Taiwan"],"affiliations":[{"raw_affiliation_string":"Institute of Biomedical Informatics, National Yang Ming University, Taipei, Taiwan","institution_ids":["https://openalex.org/I4210087697","https://openalex.org/I148366613"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031843453","display_name":"Pei-Yen Lin","orcid":null},"institutions":[{"id":"https://openalex.org/I25846049","display_name":"National Tsing Hua University","ror":"https://ror.org/00zdnkx70","country_code":"TW","type":"education","lineage":["https://openalex.org/I25846049"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Pei-Yen Lin","raw_affiliation_strings":["Department of Computer Science, National Tsing-Hua University, Hsinchu, Taiwan"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, National Tsing-Hua University, Hsinchu, Taiwan","institution_ids":["https://openalex.org/I25846049"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054986073","display_name":"Yu-Ting You","orcid":null},"institutions":[{"id":"https://openalex.org/I4210098366","display_name":"Institute of Information Science, Academia Sinica","ror":"https://ror.org/00z83z196","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210098366","https://openalex.org/I84653119"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Yu-Ting You","raw_affiliation_strings":["Intelligent Agent Systems Laboratory, Institute of Information Science, Academia Sinica, Taipei, Taiwan"],"affiliations":[{"raw_affiliation_string":"Intelligent Agent Systems Laboratory, Institute of Information Science, Academia Sinica, Taipei, Taiwan","institution_ids":["https://openalex.org/I4210098366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030771512","display_name":"Richard Tzong\u2010Han Tsai","orcid":"https://orcid.org/0000-0003-0513-107X"},"institutions":[{"id":"https://openalex.org/I22265921","display_name":"National Central University","ror":"https://ror.org/00944ve71","country_code":"TW","type":"education","lineage":["https://openalex.org/I22265921"]}],"countries":["TW"],"is_corresponding":true,"raw_author_name":"Richard Tzong-Han Tsai","raw_affiliation_strings":["Intelligent Information Service Research Laboratory, Department of Computer Science and Information Engineering, National Central University, Taoyuan, Taiwan"],"affiliations":[{"raw_affiliation_string":"Intelligent Information Service Research Laboratory, Department of Computer Science and Information Engineering, National Central University, Taoyuan, Taiwan","institution_ids":["https://openalex.org/I22265921"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5112054430","display_name":"Wen-Lian Hsu","orcid":null},"institutions":[{"id":"https://openalex.org/I4210098366","display_name":"Institute of Information Science, Academia Sinica","ror":"https://ror.org/00z83z196","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210098366","https://openalex.org/I84653119"]}],"countries":["TW"],"is_corresponding":true,"raw_author_name":"Wen-Lian Hsu","raw_affiliation_strings":["Intelligent Agent Systems Laboratory, Institute of Information Science, Academia Sinica, Taipei, Taiwan"],"affiliations":[{"raw_affiliation_string":"Intelligent Agent Systems Laboratory, Institute of Information Science, Academia Sinica, Taipei, Taiwan","institution_ids":["https://openalex.org/I4210098366"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5030771512","https://openalex.org/A5112054430"],"corresponding_institution_ids":["https://openalex.org/I22265921","https://openalex.org/I4210098366"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":2.083,"has_fulltext":false,"cited_by_count":52,"citation_normalized_percentile":{"value":0.87915719,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"21","issue":"6","first_page":"2219","last_page":"2238"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9860000014305115,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6428194642066956},{"id":"https://openalex.org/keywords/named-entity-recognition","display_name":"Named-entity recognition","score":0.4471096992492676},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.4172663986682892},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.37734460830688477},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.35072165727615356},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.07374504208564758},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.045310527086257935},{"id":"https://openalex.org/keywords/systems-engineering","display_name":"Systems engineering","score":0.044081658124923706}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6428194642066956},{"id":"https://openalex.org/C2779135771","wikidata":"https://www.wikidata.org/wiki/Q403574","display_name":"Named-entity recognition","level":3,"score":0.4471096992492676},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.4172663986682892},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.37734460830688477},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.35072165727615356},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.07374504208564758},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.045310527086257935},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.044081658124923706}],"mesh":[{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011795","descriptor_name":"Surveys and Questionnaires","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011795","descriptor_name":"Surveys and Questionnaires","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011795","descriptor_name":"Surveys and Questionnaires","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbaa054","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbaa054","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:32602538","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32602538","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.6200000047683716,"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4"}],"awards":[{"id":"https://openalex.org/G8224019631","display_name":null,"funder_award_id":"108-2319-B-400-001","funder_id":"https://openalex.org/F4320322795","funder_display_name":"Ministry of Science and Technology, Taiwan"}],"funders":[{"id":"https://openalex.org/F4320322795","display_name":"Ministry of Science and Technology, Taiwan","ror":"https://ror.org/02kv4zf79"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":129,"referenced_works":["https://openalex.org/W76749362","https://openalex.org/W77347155","https://openalex.org/W90362830","https://openalex.org/W1034019924","https://openalex.org/W1494732973","https://openalex.org/W1508225465","https://openalex.org/W1554804307","https://openalex.org/W1747861911","https://openalex.org/W1791866474","https://openalex.org/W1850865022","https://openalex.org/W1902770889","https://openalex.org/W1907286193","https://openalex.org/W1964670939","https://openalex.org/W1982059951","https://openalex.org/W2026316743","https://openalex.org/W2029017735","https://openalex.org/W2047782770","https://openalex.org/W2048140075","https://openalex.org/W2050902903","https://openalex.org/W2052217781","https://openalex.org/W2057954853","https://openalex.org/W2065963191","https://openalex.org/W2074640468","https://openalex.org/W2078169166","https://openalex.org/W2097960255","https://openalex.org/W2100428244","https://openalex.org/W2100751507","https://openalex.org/W2101553882","https://openalex.org/W2102514878","https://openalex.org/W2107005506","https://openalex.org/W2112227057","https://openalex.org/W2112796553","https://openalex.org/W2117130368","https://openalex.org/W2118202495","https://openalex.org/W2122377078","https://openalex.org/W2122402213","https://openalex.org/W2127479124","https://openalex.org/W2129113459","https://openalex.org/W2142016317","https://openalex.org/W2143017621","https://openalex.org/W2159640576","https://openalex.org/W2162461580","https://openalex.org/W2163107094","https://openalex.org/W2166474856","https://openalex.org/W2169099542","https://openalex.org/W2169974160","https://openalex.org/W2170189740","https://openalex.org/W2250539671","https://openalex.org/W2346452181","https://openalex.org/W2414378847","https://openalex.org/W2515248967","https://openalex.org/W2529518929","https://openalex.org/W2533179929","https://openalex.org/W2578577905","https://openalex.org/W2604019706","https://openalex.org/W2735585131","https://openalex.org/W2775645290","https://openalex.org/W2779457220","https://openalex.org/W2787045460","https://openalex.org/W2890461267","https://openalex.org/W2891469329","https://openalex.org/W2901332105","https://openalex.org/W2911489562","https://openalex.org/W2912026815","https://openalex.org/W2912075946","https://openalex.org/W2914463643","https://openalex.org/W2916355958","https://openalex.org/W2953126493","https://openalex.org/W2963341956","https://openalex.org/W2972793871","https://openalex.org/W2977393556","https://openalex.org/W2990887822","https://openalex.org/W4213341728","https://openalex.org/W4229004063","https://openalex.org/W4233602311","https://openalex.org/W4285719527","https://openalex.org/W4297809627","https://openalex.org/W6600347082","https://openalex.org/W6603123688","https://openalex.org/W6603694148","https://openalex.org/W6630526942","https://openalex.org/W6630967881","https://openalex.org/W6632766574","https://openalex.org/W6633844055","https://openalex.org/W6635275303","https://openalex.org/W6637341562","https://openalex.org/W6639072313","https://openalex.org/W6639190232","https://openalex.org/W6645503500","https://openalex.org/W6648987076","https://openalex.org/W6651694620","https://openalex.org/W6652118667","https://openalex.org/W6653264071","https://openalex.org/W6654860678","https://openalex.org/W6656041681","https://openalex.org/W6658704000","https://openalex.org/W6658898802","https://openalex.org/W6660951998","https://openalex.org/W6662590293","https://openalex.org/W6662650957","https://openalex.org/W6664679033","https://openalex.org/W6665863690","https://openalex.org/W6666923379","https://openalex.org/W6668534363","https://openalex.org/W6674214718","https://openalex.org/W6674853940","https://openalex.org/W6675508120","https://openalex.org/W6675914680","https://openalex.org/W6676058677","https://openalex.org/W6677735700","https://openalex.org/W6678161147","https://openalex.org/W6679100550","https://openalex.org/W6679653994","https://openalex.org/W6679982669","https://openalex.org/W6680779052","https://openalex.org/W6681203831","https://openalex.org/W6682007918","https://openalex.org/W6682124457","https://openalex.org/W6682170221","https://openalex.org/W6684363239","https://openalex.org/W6684484140","https://openalex.org/W6691710163","https://openalex.org/W6704842505","https://openalex.org/W6744479720","https://openalex.org/W6748232307","https://openalex.org/W6748302340","https://openalex.org/W6757269602","https://openalex.org/W6758293299","https://openalex.org/W6759960650"],"related_works":["https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W3005759282","https://openalex.org/W3017222382","https://openalex.org/W3128216712","https://openalex.org/W3136915866","https://openalex.org/W4390279576","https://openalex.org/W2886890203","https://openalex.org/W4313535650","https://openalex.org/W2287770975"],"abstract_inverted_index":{"Natural":[0],"language":[1],"processing":[2],"(NLP)":[3],"is":[4,154,209,217],"widely":[5],"applied":[6],"in":[7,101,247],"biological":[8],"domains":[9],"to":[10,16,50,111,115],"retrieve":[11],"information":[12],"from":[13,196],"publications.":[14],"Systems":[15],"address":[17],"numerous":[18],"applications":[19,53],"exist,":[20],"such":[21,81],"as":[22,82],"biomedical":[23,119,132],"named":[24,28,107],"entity":[25,29,108,133,172,175],"recognition":[26,109],"(BNER),":[27],"normalization":[30],"(NEN)":[31],"and":[32,45,54,65,76,84,104,124,149,164,180],"protein-protein":[33,122],"interaction":[34,123],"extraction":[35],"(PPIE).":[36],"High-quality":[37],"datasets":[38,61,75],"can":[39],"assist":[40],"the":[41,51,57,94,102,138,186,189,193,197],"development":[42],"of":[43,59,93,118,188],"robust":[44],"reliable":[46],"systems;":[47],"however,":[48],"due":[49],"endless":[52],"evolving":[55],"techniques,":[56],"annotations":[58,160],"benchmark":[60],"may":[62],"become":[63],"outdated":[64],"inappropriate.":[66],"In":[67,167],"this":[68],"study,":[69],"we":[70,88,128,191],"first":[71],"review":[72,192],"commonlyused":[73],"BNER":[74,194],"their":[77],"potential":[78,99],"annotation":[79],"problems":[80,100],"inconsistency":[83],"low":[85],"portability.":[86],"Then,":[87],"introduce":[89,129],"a":[90,155],"revised":[91,139,206],"version":[92],"JNLPBA":[95,140,207],"dataset":[96,134,141,157,208,216],"that":[97,158],"solves":[98],"original":[103],"use":[105],"state-of-the-art":[106],"systems":[110],"evaluate":[112],"its":[113],"portability":[114],"different":[116],"kinds":[117],"literature,":[120],"including":[121,161],"biology":[125],"events.":[126],"Lastly,":[127],"an":[130],"ensembled":[131],"(EBED)":[135],"by":[136],"extending":[137],"with":[142,177],"PubMed":[143],"Central":[144],"full-text":[145],"paragraphs,":[146],"figure":[147],"captions":[148],"patent":[150],"abstracts.":[151],"This":[152],"EBED":[153,215],"multi-task":[156],"covers":[159],"gene,":[162],"disease":[163],"chemical":[165],"entities.":[166],"total,":[168],"it":[169],"contains":[170],"85000":[171],"mentions,":[173],"25000":[174],"mentions":[176],"database":[178],"identifiers":[179],"5000":[181],"attribute":[182],"tags.":[183],"To":[184],"demonstrate":[185],"usage":[187],"EBED,":[190],"track":[195],"AI":[198],"CUP":[199],"Biomedical":[200],"Paper":[201],"Analysis":[202],"challenge.":[203],"Availability:":[204],"The":[205,214],"available":[210,218,244],"at":[211,219,245],"https://iasl-btm.iis.sinica.edu.tw/BNER/Content/Re":[212],"vised_JNLPBA.zip.":[213],"https://iasl-btm.iis.sinica.edu.tw/BNER/Content/AICUP":[220],"_EBED_dataset.rar.":[221],"Contact:":[222],"Email:":[223,231],"thtsai@g.ncu.edu.tw,":[224],"Tel.":[225,233],"886-3-4227151":[226],"ext.":[227,235],"35203,":[228],"Fax:":[229,237],"886-3-422-2681":[230],"hsu@iis.sinica.edu.tw,":[232],"886-2-2788-3799":[234],"2211,":[236],"886-2-2782-4814":[238],"Supplementary":[239,241],"information:":[240],"data":[242],"are":[243],"Briefings":[246],"Bioinformatics":[248],"online.":[249]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":9},{"year":2024,"cited_by_count":15},{"year":2023,"cited_by_count":9},{"year":2022,"cited_by_count":10},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":2}],"updated_date":"2026-03-09T08:58:05.943551","created_date":"2025-10-10T00:00:00"}
