{"id":"https://openalex.org/W3022352345","doi":"https://doi.org/10.1093/bib/bbaa048","title":"CeRNASeek: an R package for identification and analysis of ceRNA regulation","display_name":"CeRNASeek: an R package for identification and analysis of ceRNA regulation","publication_year":2020,"publication_date":"2020-03-13","ids":{"openalex":"https://openalex.org/W3022352345","doi":"https://doi.org/10.1093/bib/bbaa048","mag":"3022352345","pmid":"https://pubmed.ncbi.nlm.nih.gov/32363380"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbaa048","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbaa048","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100350870","display_name":"Mengying Zhang","orcid":"https://orcid.org/0009-0005-7256-8513"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Mengying Zhang","raw_affiliation_strings":["College of Bioinformatics Science and Technology at Harbin Medical University, China"],"affiliations":[{"raw_affiliation_string":"College of Bioinformatics Science and Technology at Harbin Medical University, China","institution_ids":["https://openalex.org/I156144747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040655235","display_name":"Xiyun Jin","orcid":"https://orcid.org/0000-0003-2795-6451"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiyun Jin","raw_affiliation_strings":["College of Bioinformatics Science and Technology at Harbin Medical University, China"],"affiliations":[{"raw_affiliation_string":"College of Bioinformatics Science and Technology at Harbin Medical University, China","institution_ids":["https://openalex.org/I156144747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100363210","display_name":"Junyi Li","orcid":"https://orcid.org/0000-0002-6274-799X"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Junyi Li","raw_affiliation_strings":["College of Bioinformatics Science and Technology at Harbin Medical University, China"],"affiliations":[{"raw_affiliation_string":"College of Bioinformatics Science and Technology at Harbin Medical University, China","institution_ids":["https://openalex.org/I156144747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087081408","display_name":"Yi Tian","orcid":"https://orcid.org/0000-0001-7891-5962"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yi Tian","raw_affiliation_strings":["College of Bioinformatics Science and Technology at Harbin Medical University, China"],"affiliations":[{"raw_affiliation_string":"College of Bioinformatics Science and Technology at Harbin Medical University, China","institution_ids":["https://openalex.org/I156144747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100341303","display_name":"Qi Wang","orcid":"https://orcid.org/0000-0002-5287-6050"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qi Wang","raw_affiliation_strings":["College of Bioinformatics Science and Technology at Harbin Medical University, China"],"affiliations":[{"raw_affiliation_string":"College of Bioinformatics Science and Technology at Harbin Medical University, China","institution_ids":["https://openalex.org/I156144747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100445596","display_name":"Xia Li","orcid":"https://orcid.org/0000-0002-9794-2648"},"institutions":[{"id":"https://openalex.org/I79731167","display_name":"Hainan Medical University","ror":"https://ror.org/004eeze55","country_code":"CN","type":"education","lineage":["https://openalex.org/I79731167"]},{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xinhui Li","raw_affiliation_strings":["College of Bioinformatics Science and Technology at Harbin Medical University, China","Key Laboratory of Tropical Translational Medicine of Ministry of Education, Hainan Medical University, China"],"affiliations":[{"raw_affiliation_string":"College of Bioinformatics Science and Technology at Harbin Medical University, China","institution_ids":["https://openalex.org/I156144747"]},{"raw_affiliation_string":"Key Laboratory of Tropical Translational Medicine of Ministry of Education, Hainan Medical University, China","institution_ids":["https://openalex.org/I79731167"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076495142","display_name":"Juan Xu","orcid":"https://orcid.org/0000-0002-3709-4165"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]},{"id":"https://openalex.org/I79731167","display_name":"Hainan Medical University","ror":"https://ror.org/004eeze55","country_code":"CN","type":"education","lineage":["https://openalex.org/I79731167"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Juan Xu","raw_affiliation_strings":["College of Bioinformatics Science and Technology at Harbin Medical University, China","Key Laboratory of Tropical Translational Medicine of Ministry of Education, Hainan Medical University, China"],"affiliations":[{"raw_affiliation_string":"College of Bioinformatics Science and Technology at Harbin Medical University, China","institution_ids":["https://openalex.org/I156144747"]},{"raw_affiliation_string":"Key Laboratory of Tropical Translational Medicine of Ministry of Education, Hainan Medical University, China","institution_ids":["https://openalex.org/I79731167"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100389127","display_name":"Yongsheng Li","orcid":"https://orcid.org/0000-0003-1914-0727"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]},{"id":"https://openalex.org/I79731167","display_name":"Hainan Medical University","ror":"https://ror.org/004eeze55","country_code":"CN","type":"education","lineage":["https://openalex.org/I79731167"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yongsheng Li","raw_affiliation_strings":["College of Bioinformatics Science and Technology at Harbin Medical University, China","Key Laboratory of Tropical Translational Medicine of Ministry of Education, Hainan Medical University, China"],"affiliations":[{"raw_affiliation_string":"College of Bioinformatics Science and Technology at Harbin Medical University, China","institution_ids":["https://openalex.org/I156144747"]},{"raw_affiliation_string":"Key Laboratory of Tropical Translational Medicine of Ministry of Education, Hainan Medical University, China","institution_ids":["https://openalex.org/I79731167"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100445596","display_name":"Xia Li","orcid":"https://orcid.org/0000-0002-9794-2648"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]},{"id":"https://openalex.org/I79731167","display_name":"Hainan Medical University","ror":"https://ror.org/004eeze55","country_code":"CN","type":"education","lineage":["https://openalex.org/I79731167"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xia Li","raw_affiliation_strings":["College of Bioinformatics Science and Technology at Harbin Medical University, China","Key Laboratory of Tropical Translational Medicine of Ministry of Education, Hainan Medical University, China"],"affiliations":[{"raw_affiliation_string":"College of Bioinformatics Science and Technology at Harbin Medical University, China","institution_ids":["https://openalex.org/I156144747"]},{"raw_affiliation_string":"Key Laboratory of Tropical Translational Medicine of Ministry of Education, Hainan Medical University, China","institution_ids":["https://openalex.org/I79731167"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5076495142","https://openalex.org/A5100389127","https://openalex.org/A5100445596"],"corresponding_institution_ids":["https://openalex.org/I156144747","https://openalex.org/I79731167"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":1.1984,"has_fulltext":false,"cited_by_count":22,"citation_normalized_percentile":{"value":0.76253521,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":99},"biblio":{"volume":"22","issue":"3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/competing-endogenous-rna","display_name":"Competing endogenous RNA","score":0.9826298952102661},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5564598441123962},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.478211373090744},{"id":"https://openalex.org/keywords/subtyping","display_name":"Subtyping","score":0.4420918822288513},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3338397145271301},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.32603567838668823},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.17394250631332397},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.16816118359565735},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.10499972105026245},{"id":"https://openalex.org/keywords/long-non-coding-rna","display_name":"Long non-coding RNA","score":0.10013660788536072}],"concepts":[{"id":"https://openalex.org/C60365752","wikidata":"https://www.wikidata.org/wiki/Q5156306","display_name":"Competing endogenous RNA","level":5,"score":0.9826298952102661},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5564598441123962},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.478211373090744},{"id":"https://openalex.org/C83852419","wikidata":"https://www.wikidata.org/wiki/Q2713292","display_name":"Subtyping","level":2,"score":0.4420918822288513},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3338397145271301},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.32603567838668823},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.17394250631332397},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.16816118359565735},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.10499972105026245},{"id":"https://openalex.org/C62203573","wikidata":"https://www.wikidata.org/wiki/Q15087973","display_name":"Long non-coding RNA","level":4,"score":0.10013660788536072},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015972","descriptor_name":"Gene Expression Regulation, Neoplastic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015972","descriptor_name":"Gene Expression Regulation, Neoplastic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015972","descriptor_name":"Gene Expression Regulation, Neoplastic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D051059","descriptor_name":"PTEN Phosphohydrolase","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D051059","descriptor_name":"PTEN Phosphohydrolase","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D051059","descriptor_name":"PTEN Phosphohydrolase","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbaa048","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbaa048","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:32363380","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32363380","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17","score":0.4699999988079071}],"awards":[{"id":"https://openalex.org/G3435502301","display_name":null,"funder_award_id":"31871338","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5193609024","display_name":null,"funder_award_id":"61873075","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6725056020","display_name":null,"funder_award_id":"31970646","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":50,"referenced_works":["https://openalex.org/W1507971298","https://openalex.org/W1556935306","https://openalex.org/W1971623350","https://openalex.org/W1989277387","https://openalex.org/W1992097204","https://openalex.org/W2007553857","https://openalex.org/W2010457001","https://openalex.org/W2021699617","https://openalex.org/W2028433016","https://openalex.org/W2035190528","https://openalex.org/W2049347697","https://openalex.org/W2059794606","https://openalex.org/W2076865561","https://openalex.org/W2079696502","https://openalex.org/W2106030955","https://openalex.org/W2109816625","https://openalex.org/W2112012611","https://openalex.org/W2115462905","https://openalex.org/W2130687298","https://openalex.org/W2135398049","https://openalex.org/W2145931730","https://openalex.org/W2153234291","https://openalex.org/W2159380507","https://openalex.org/W2159707944","https://openalex.org/W2280316621","https://openalex.org/W2341291028","https://openalex.org/W2460955802","https://openalex.org/W2466688850","https://openalex.org/W2523970725","https://openalex.org/W2561440038","https://openalex.org/W2587652078","https://openalex.org/W2604048986","https://openalex.org/W2625559053","https://openalex.org/W2760942750","https://openalex.org/W2765531450","https://openalex.org/W2772320201","https://openalex.org/W2897815318","https://openalex.org/W2908755714","https://openalex.org/W2912469524","https://openalex.org/W2912814435","https://openalex.org/W2918558887","https://openalex.org/W2924670070","https://openalex.org/W2953211530","https://openalex.org/W3127015740","https://openalex.org/W4232620598","https://openalex.org/W4233698560","https://openalex.org/W6719712481","https://openalex.org/W6727704602","https://openalex.org/W6744687619","https://openalex.org/W6758135917"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2396009657","https://openalex.org/W2799110842","https://openalex.org/W3032826521","https://openalex.org/W2391332606","https://openalex.org/W1462775415","https://openalex.org/W4229853287","https://openalex.org/W1535483699","https://openalex.org/W2008549446","https://openalex.org/W2939950766"],"abstract_inverted_index":{"Competitive":[0],"endogenous":[1],"RNA":[2],"(ceRNA)":[3],"represents":[4],"a":[5,107,123],"novel":[6],"layer":[7],"of":[8,23,49,95,114,132],"gene":[9],"regulation":[10,70],"that":[11,104],"controls":[12],"both":[13],"physiological":[14],"and":[15,43,66,90,99,125,130],"pathological":[16],"processes.":[17],"However,":[18],"there":[19],"is":[20,106,137],"still":[21],"lack":[22],"computational":[24,57],"tools":[25],"for":[26,80,110,128],"quickly":[27],"identifying":[28,42,129],"ceRNA":[29,69,97,133],"regulation.":[30,134],"To":[31],"address":[32],"this":[33],"problem,":[34],"we":[35,102],"presented":[36],"an":[37],"R-package,":[38],"CeRNASeek,":[39],"which":[40],"allows":[41],"analyzing":[44],"ceRNA-ceRNA":[45,61,82],"interactions":[46],"by":[47],"integration":[48],"multiple-omics":[50],"data.":[51],"CeRNASeek":[52,105,121],"integrates":[53],"six":[54],"widely":[55],"used":[56],"methods":[58],"to":[59],"identify":[60],"interactions,":[62],"including":[63,84],"two":[64],"global":[65],"four":[67],"context-specific":[68],"prediction":[71],"methods.":[72],"In":[73,119],"addition,":[74],"it":[75],"provides":[76,122],"several":[77],"downstream":[78],"analyses":[79],"predicted":[81],"pairs,":[83],"regulatory":[85],"network":[86],"analysis,":[87],"functional":[88],"annotation":[89],"survival":[91],"analysis.":[92],"With":[93],"examples":[94],"cancer-related":[96],"prioritization":[98],"cancer":[100],"subtyping,":[101],"demonstrate":[103],"valuable":[108],"tool":[109,127],"investigating":[111],"the":[112,140],"function":[113],"ceRNAs":[115],"in":[116],"complex":[117],"diseases.":[118],"summary,":[120],"comprehensive":[124],"efficient":[126],"analysis":[131],"The":[135],"package":[136],"available":[138],"on":[139],"Comprehensive":[141],"R":[142],"Archive":[143],"Network":[144],"(CRAN)":[145],"at":[146],"https://CRAN.R-project.org/package=CeRNASeek.":[147]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":3}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
