{"id":"https://openalex.org/W3009386543","doi":"https://doi.org/10.1093/bib/bbaa026","title":"Immune cell infiltration-based signature for prognosis and immunogenomic analysis in breast cancer","display_name":"Immune cell infiltration-based signature for prognosis and immunogenomic analysis in breast cancer","publication_year":2020,"publication_date":"2020-02-17","ids":{"openalex":"https://openalex.org/W3009386543","doi":"https://doi.org/10.1093/bib/bbaa026","mag":"3009386543","pmid":"https://pubmed.ncbi.nlm.nih.gov/32141494"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbaa026","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbaa026","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100640301","display_name":"Shiyuan Wang","orcid":"https://orcid.org/0000-0002-5028-5839"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Shiyuan Wang","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101819733","display_name":"Qi Zhang","orcid":"https://orcid.org/0000-0003-0692-1815"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Qi Zhang","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101085303","display_name":"Chunlu Yu","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Chunlu Yu","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085429158","display_name":"Yiyin Cao","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Yiyin Cao","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001300435","display_name":"Yongchun Zuo","orcid":"https://orcid.org/0000-0002-6065-7835"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Yongchun Zuo","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0002-6065-7835","affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5057225835","display_name":"Lei Yang","orcid":"https://orcid.org/0000-0002-1133-9099"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Lei Yang","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5100640301"],"corresponding_institution_ids":[],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":9.1173,"has_fulltext":false,"cited_by_count":139,"citation_normalized_percentile":{"value":0.98525959,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"22","issue":"2","first_page":"2020","last_page":"2031"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10158","display_name":"Cancer Immunotherapy and Biomarkers","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10158","display_name":"Cancer Immunotherapy and Biomarkers","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11297","display_name":"Ferroptosis and cancer prognosis","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11313","display_name":"Immune cells in cancer","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/immune-system","display_name":"Immune system","score":0.85079026222229},{"id":"https://openalex.org/keywords/breast-cancer","display_name":"Breast cancer","score":0.830546498298645},{"id":"https://openalex.org/keywords/immunotherapy","display_name":"Immunotherapy","score":0.6651391386985779},{"id":"https://openalex.org/keywords/oncology","display_name":"Oncology","score":0.6343851685523987},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.6050176024436951},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.524703860282898},{"id":"https://openalex.org/keywords/survival-analysis","display_name":"Survival analysis","score":0.4864515960216522},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.45711779594421387},{"id":"https://openalex.org/keywords/immunology","display_name":"Immunology","score":0.41663533449172974}],"concepts":[{"id":"https://openalex.org/C8891405","wikidata":"https://www.wikidata.org/wiki/Q1059","display_name":"Immune system","level":2,"score":0.85079026222229},{"id":"https://openalex.org/C530470458","wikidata":"https://www.wikidata.org/wiki/Q128581","display_name":"Breast cancer","level":3,"score":0.830546498298645},{"id":"https://openalex.org/C2777701055","wikidata":"https://www.wikidata.org/wiki/Q1427096","display_name":"Immunotherapy","level":3,"score":0.6651391386985779},{"id":"https://openalex.org/C143998085","wikidata":"https://www.wikidata.org/wiki/Q162555","display_name":"Oncology","level":1,"score":0.6343851685523987},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.6050176024436951},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.524703860282898},{"id":"https://openalex.org/C10515644","wikidata":"https://www.wikidata.org/wiki/Q543310","display_name":"Survival analysis","level":2,"score":0.4864515960216522},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.45711779594421387},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.41663533449172974}],"mesh":[{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011379","descriptor_name":"Prognosis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011379","descriptor_name":"Prognosis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011379","descriptor_name":"Prognosis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015331","descriptor_name":"Cohort Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015331","descriptor_name":"Cohort Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015331","descriptor_name":"Cohort Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019139","descriptor_name":"Tumor Escape","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019139","descriptor_name":"Tumor Escape","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019139","descriptor_name":"Tumor Escape","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059016","descriptor_name":"Tumor Microenvironment","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D059016","descriptor_name":"Tumor Microenvironment","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D059016","descriptor_name":"Tumor Microenvironment","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D059016","descriptor_name":"Tumor Microenvironment","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D059016","descriptor_name":"Tumor Microenvironment","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D059016","descriptor_name":"Tumor Microenvironment","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbaa026","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbaa026","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:32141494","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32141494","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Good health and well-being","score":0.8600000143051147,"id":"https://metadata.un.org/sdg/3"}],"awards":[{"id":"https://openalex.org/G4339090084","display_name":null,"funder_award_id":"61702290","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7915782196","display_name":null,"funder_award_id":"61602135","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":72,"referenced_works":["https://openalex.org/W1821140461","https://openalex.org/W1908864745","https://openalex.org/W1966107523","https://openalex.org/W1967954493","https://openalex.org/W1979051608","https://openalex.org/W1985102142","https://openalex.org/W1985987855","https://openalex.org/W1992468678","https://openalex.org/W2004630197","https://openalex.org/W2005895632","https://openalex.org/W2011999110","https://openalex.org/W2026029065","https://openalex.org/W2028433016","https://openalex.org/W2035618305","https://openalex.org/W2042619042","https://openalex.org/W2052481226","https://openalex.org/W2053122486","https://openalex.org/W2076669505","https://openalex.org/W2088160256","https://openalex.org/W2097177355","https://openalex.org/W2099139312","https://openalex.org/W2107429737","https://openalex.org/W2111587728","https://openalex.org/W2112289645","https://openalex.org/W2114104545","https://openalex.org/W2114843025","https://openalex.org/W2116830437","https://openalex.org/W2121518671","https://openalex.org/W2123879591","https://openalex.org/W2130430382","https://openalex.org/W2130879249","https://openalex.org/W2132413371","https://openalex.org/W2137074525","https://openalex.org/W2139795964","https://openalex.org/W2142300779","https://openalex.org/W2146512944","https://openalex.org/W2149441684","https://openalex.org/W2150322923","https://openalex.org/W2154270347","https://openalex.org/W2159707944","https://openalex.org/W2291298003","https://openalex.org/W2295989008","https://openalex.org/W2308639964","https://openalex.org/W2406250479","https://openalex.org/W2551911481","https://openalex.org/W2556868315","https://openalex.org/W2586710091","https://openalex.org/W2587688848","https://openalex.org/W2593030814","https://openalex.org/W2619463261","https://openalex.org/W2747774814","https://openalex.org/W2761575992","https://openalex.org/W2763701359","https://openalex.org/W2769419513","https://openalex.org/W2774533844","https://openalex.org/W2781525129","https://openalex.org/W2785803176","https://openalex.org/W2793364080","https://openalex.org/W2796153225","https://openalex.org/W2796207838","https://openalex.org/W2886318702","https://openalex.org/W2905691307","https://openalex.org/W2911188335","https://openalex.org/W2919814435","https://openalex.org/W2943074432","https://openalex.org/W2971305747","https://openalex.org/W2972657204","https://openalex.org/W2994317626","https://openalex.org/W4243607236","https://openalex.org/W6646568911","https://openalex.org/W6677899853","https://openalex.org/W6733365994"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2375584271","https://openalex.org/W2357948923","https://openalex.org/W1997105855","https://openalex.org/W4211132779","https://openalex.org/W4313472242","https://openalex.org/W2332159055","https://openalex.org/W2030500189","https://openalex.org/W2989121736","https://openalex.org/W2892677547"],"abstract_inverted_index":{"Breast":[0],"cancer":[1,28,51,77],"is":[2],"one":[3],"of":[4,14,26,56],"the":[5,11,18,21,35,67],"most":[6],"human":[7],"malignant":[8],"diseases":[9],"and":[10,23,79,115,132,154],"leading":[12],"cause":[13],"cancer-related":[15],"death":[16],"in":[17,48,99],"world.":[19],"However,":[20],"prognostic":[22,44,72],"therapeutic":[24,128],"benefits":[25,129],"breast":[27,50,100,160],"patients":[29,122,158],"cannot":[30],"be":[31,146],"predicted":[32],"accurately":[33],"by":[34],"current":[36],"stratifying":[37],"system.":[38],"In":[39],"this":[40,88,142],"study,":[41],"an":[42],"immune-related":[43],"score":[45,90,104,144],"was":[46,63,91,105],"established":[47],"22":[49],"cohorts":[52],"with":[53,107,123,159],"a":[54,92,147],"total":[55],"6415":[57],"samples.":[58],"An":[59],"extensive":[60],"immunogenomic":[61],"analysis":[62,85,119],"conducted":[64],"to":[65],"explore":[66],"relationships":[68],"between":[69],"immune":[70,75,81,89,103,113,125,143],"score,":[71],"significance,":[73],"infiltrating":[74],"cells,":[76],"genotypes":[78],"potential":[80],"escape":[82,114],"mechanisms.":[83],"Our":[84],"revealed":[86,120],"that":[87,121,141],"promising":[93],"biomarker":[94],"for":[95,150,157],"estimating":[96],"overall":[97,151],"survival":[98,152],"cancer.":[101,161],"This":[102],"associated":[106],"important":[108],"immunophenotypic":[109],"factors,":[110],"such":[111],"as":[112],"mutation":[116],"load.":[117],"Further":[118],"high":[124],"scores":[126],"exhibited":[127],"from":[130],"chemotherapy":[131],"immunotherapy.":[133],"Based":[134],"on":[135],"these":[136],"results,":[137],"we":[138],"can":[139],"conclude":[140],"may":[145],"useful":[148],"tool":[149],"prediction":[153],"treatment":[155],"guidance":[156]},"counts_by_year":[{"year":2025,"cited_by_count":11},{"year":2024,"cited_by_count":21},{"year":2023,"cited_by_count":21},{"year":2022,"cited_by_count":49},{"year":2021,"cited_by_count":30},{"year":2020,"cited_by_count":7}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
