{"id":"https://openalex.org/W3006380141","doi":"https://doi.org/10.1093/bib/bbaa005","title":"Network analyses in microbiome based on high-throughput multi-omics data","display_name":"Network analyses in microbiome based on high-throughput multi-omics data","publication_year":2020,"publication_date":"2020-01-09","ids":{"openalex":"https://openalex.org/W3006380141","doi":"https://doi.org/10.1093/bib/bbaa005","mag":"3006380141","pmid":"https://pubmed.ncbi.nlm.nih.gov/32047891"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbaa005","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaa005","pdf_url":"https://academic.oup.com/bib/article-pdf/22/2/1639/36654613/bbaa005.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/article-pdf/22/2/1639/36654613/bbaa005.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5075883718","display_name":"Zhaoqian Liu","orcid":"https://orcid.org/0000-0003-0428-3928"},"institutions":[{"id":"https://openalex.org/I52357470","display_name":"The Ohio State University","ror":"https://ror.org/00rs6vg23","country_code":"US","type":"education","lineage":["https://openalex.org/I52357470"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Zhaoqian Liu","raw_affiliation_strings":["Department of Biomedical Informatics, College of Medicine, the Ohio State University, Columbus, OH 43210, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, College of Medicine, the Ohio State University, Columbus, OH 43210, USA","institution_ids":["https://openalex.org/I52357470"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056199285","display_name":"Anjun Ma","orcid":"https://orcid.org/0000-0001-6269-398X"},"institutions":[{"id":"https://openalex.org/I52357470","display_name":"The Ohio State University","ror":"https://ror.org/00rs6vg23","country_code":"US","type":"education","lineage":["https://openalex.org/I52357470"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Anjun Ma","raw_affiliation_strings":["Department of Biomedical Informatics, College of Medicine, the Ohio State University, Columbus, OH 43210, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, College of Medicine, the Ohio State University, Columbus, OH 43210, USA","institution_ids":["https://openalex.org/I52357470"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051353435","display_name":"Ewy A. Math\u00e9","orcid":"https://orcid.org/0000-0003-4491-8107"},"institutions":[{"id":"https://openalex.org/I52357470","display_name":"The Ohio State University","ror":"https://ror.org/00rs6vg23","country_code":"US","type":"education","lineage":["https://openalex.org/I52357470"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ewy Math\u00e9","raw_affiliation_strings":["Department of Biomedical Informatics, College of Medicine, the Ohio State University, Columbus, OH 43210, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, College of Medicine, the Ohio State University, Columbus, OH 43210, USA","institution_ids":["https://openalex.org/I52357470"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089533616","display_name":"Marlena R. Merling","orcid":null},"institutions":[{"id":"https://openalex.org/I52357470","display_name":"The Ohio State University","ror":"https://ror.org/00rs6vg23","country_code":"US","type":"education","lineage":["https://openalex.org/I52357470"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Marlena Merling","raw_affiliation_strings":["Department of Biomedical Informatics, College of Medicine, the Ohio State University, Columbus, OH 43210, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, College of Medicine, the Ohio State University, Columbus, OH 43210, USA","institution_ids":["https://openalex.org/I52357470"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022408570","display_name":"Qin Ma","orcid":"https://orcid.org/0000-0002-3264-8392"},"institutions":[{"id":"https://openalex.org/I52357470","display_name":"The Ohio State University","ror":"https://ror.org/00rs6vg23","country_code":"US","type":"education","lineage":["https://openalex.org/I52357470"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Qin Ma","raw_affiliation_strings":["Department of Biomedical Informatics, College of Medicine, the Ohio State University, Columbus, OH 43210, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, College of Medicine, the Ohio State University, Columbus, OH 43210, USA","institution_ids":["https://openalex.org/I52357470"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5017344694","display_name":"Bingqiang Liu","orcid":"https://orcid.org/0000-0002-5734-1135"},"institutions":[{"id":"https://openalex.org/I52357470","display_name":"The Ohio State University","ror":"https://ror.org/00rs6vg23","country_code":"US","type":"education","lineage":["https://openalex.org/I52357470"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bingqiang Liu","raw_affiliation_strings":["Department of Biomedical Informatics, College of Medicine, the Ohio State University, Columbus, OH 43210, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, College of Medicine, the Ohio State University, Columbus, OH 43210, USA","institution_ids":["https://openalex.org/I52357470"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5075883718"],"corresponding_institution_ids":["https://openalex.org/I52357470"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":3.9225,"has_fulltext":false,"cited_by_count":93,"citation_normalized_percentile":{"value":0.94752826,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"22","issue":"2","first_page":"1639","last_page":"1655"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.681037962436676},{"id":"https://openalex.org/keywords/microbiome","display_name":"Microbiome","score":0.6616494059562683},{"id":"https://openalex.org/keywords/omics","display_name":"Omics","score":0.6257691383361816},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5413063168525696},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5287938714027405},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.43051695823669434},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.4285236895084381},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3756472170352936},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.21502572298049927}],"concepts":[{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.681037962436676},{"id":"https://openalex.org/C143121216","wikidata":"https://www.wikidata.org/wiki/Q1330402","display_name":"Microbiome","level":2,"score":0.6616494059562683},{"id":"https://openalex.org/C157585117","wikidata":"https://www.wikidata.org/wiki/Q158666","display_name":"Omics","level":2,"score":0.6257691383361816},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5413063168525696},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5287938714027405},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.43051695823669434},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.4285236895084381},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3756472170352936},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.21502572298049927},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057166","descriptor_name":"High-Throughput Screening Assays","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057166","descriptor_name":"High-Throughput Screening Assays","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057166","descriptor_name":"High-Throughput Screening Assays","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057166","descriptor_name":"High-Throughput Screening Assays","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbaa005","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaa005","pdf_url":"https://academic.oup.com/bib/article-pdf/22/2/1639/36654613/bbaa005.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:32047891","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32047891","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:7986608","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7986608","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbaa005","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaa005","pdf_url":"https://academic.oup.com/bib/article-pdf/22/2/1639/36654613/bbaa005.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4699999988079071,"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land"}],"awards":[{"id":"https://openalex.org/G2017671529","display_name":null,"funder_award_id":"#ACI-1548562","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G3090593387","display_name":null,"funder_award_id":"61772313","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6011066816","display_name":null,"funder_award_id":"UL1TR002733","funder_id":"https://openalex.org/F4320337472","funder_display_name":"National Center for Advancing Translational Sciences"},{"id":"https://openalex.org/G7795262325","display_name":null,"funder_award_id":"2018IM020200","funder_id":"https://openalex.org/F4320321540","funder_display_name":"Ministry of Science and Technology of the People's Republic of China"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321540","display_name":"Ministry of Science and Technology of the People's Republic of China","ror":"https://ror.org/027s68j25"},{"id":"https://openalex.org/F4320337472","display_name":"National Center for Advancing Translational Sciences","ror":"https://ror.org/04pw6fb54"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3006380141.pdf","grobid_xml":"https://content.openalex.org/works/W3006380141.grobid-xml"},"referenced_works_count":146,"referenced_works":["https://openalex.org/W94482989","https://openalex.org/W928499721","https://openalex.org/W1538574688","https://openalex.org/W1607198972","https://openalex.org/W1627599966","https://openalex.org/W1637936532","https://openalex.org/W1644749979","https://openalex.org/W1653902180","https://openalex.org/W1703384511","https://openalex.org/W1797688090","https://openalex.org/W1891411045","https://openalex.org/W1951683428","https://openalex.org/W1965562485","https://openalex.org/W1967961065","https://openalex.org/W1971061059","https://openalex.org/W1972883069","https://openalex.org/W1985164700","https://openalex.org/W1987219048","https://openalex.org/W1989348205","https://openalex.org/W1997062226","https://openalex.org/W2000152285","https://openalex.org/W2000589358","https://openalex.org/W2008620264","https://openalex.org/W2011312755","https://openalex.org/W2017987256","https://openalex.org/W2018045523","https://openalex.org/W2018049970","https://openalex.org/W2024409585","https://openalex.org/W2032230795","https://openalex.org/W2033378871","https://openalex.org/W2044712133","https://openalex.org/W2047693963","https://openalex.org/W2048479014","https://openalex.org/W2055631148","https://openalex.org/W2071841602","https://openalex.org/W2082649645","https://openalex.org/W2087610532","https://openalex.org/W2088209062","https://openalex.org/W2088347903","https://openalex.org/W2088833470","https://openalex.org/W2095293504","https://openalex.org/W2096679476","https://openalex.org/W2098386120","https://openalex.org/W2103170157","https://openalex.org/W2104315543","https://openalex.org/W2104328914","https://openalex.org/W2108959333","https://openalex.org/W2110256992","https://openalex.org/W2113977541","https://openalex.org/W2115026474","https://openalex.org/W2115387350","https://openalex.org/W2116662982","https://openalex.org/W2116882733","https://openalex.org/W2124540200","https://openalex.org/W2124909459","https://openalex.org/W2125826054","https://openalex.org/W2128769815","https://openalex.org/W2129620576","https://openalex.org/W2131415145","https://openalex.org/W2133074013","https://openalex.org/W2133091545","https://openalex.org/W2136737152","https://openalex.org/W2137043026","https://openalex.org/W2140084895","https://openalex.org/W2146060062","https://openalex.org/W2146856779","https://openalex.org/W2147618390","https://openalex.org/W2149573313","https://openalex.org/W2152538010","https://openalex.org/W2163480486","https://openalex.org/W2163575083","https://openalex.org/W2164727176","https://openalex.org/W2165108567","https://openalex.org/W2165198854","https://openalex.org/W2165937624","https://openalex.org/W2166468869","https://openalex.org/W2169528473","https://openalex.org/W2176371198","https://openalex.org/W2185752871","https://openalex.org/W2236507608","https://openalex.org/W2281227836","https://openalex.org/W2339590532","https://openalex.org/W2408489451","https://openalex.org/W2477852950","https://openalex.org/W2526219319","https://openalex.org/W2531800017","https://openalex.org/W2558664061","https://openalex.org/W2612505479","https://openalex.org/W2612713581","https://openalex.org/W2620912394","https://openalex.org/W2622356054","https://openalex.org/W2623587811","https://openalex.org/W2624135745","https://openalex.org/W2624193268","https://openalex.org/W2626581556","https://openalex.org/W2750268401","https://openalex.org/W2761865284","https://openalex.org/W2765135073","https://openalex.org/W2767088268","https://openalex.org/W2770707670","https://openalex.org/W2784053908","https://openalex.org/W2794224775","https://openalex.org/W2795011995","https://openalex.org/W2799490241","https://openalex.org/W2802373983","https://openalex.org/W2803664483","https://openalex.org/W2805909216","https://openalex.org/W2891197287","https://openalex.org/W2893369953","https://openalex.org/W2896601950","https://openalex.org/W2896864728","https://openalex.org/W2897611961","https://openalex.org/W2905060314","https://openalex.org/W2909472027","https://openalex.org/W2909495607","https://openalex.org/W2910423505","https://openalex.org/W2912275599","https://openalex.org/W2920716817","https://openalex.org/W2922229918","https://openalex.org/W2924357470","https://openalex.org/W2945645154","https://openalex.org/W2946564000","https://openalex.org/W2949773212","https://openalex.org/W2951076599","https://openalex.org/W2958564218","https://openalex.org/W2963276645","https://openalex.org/W2966145290","https://openalex.org/W2972528761","https://openalex.org/W2979623390","https://openalex.org/W2990249310","https://openalex.org/W2990715170","https://openalex.org/W3014189804","https://openalex.org/W3140968660","https://openalex.org/W4211085285","https://openalex.org/W4232838911","https://openalex.org/W4237083327","https://openalex.org/W4240265857","https://openalex.org/W4246020898","https://openalex.org/W4292053589","https://openalex.org/W6636977373","https://openalex.org/W6677603835","https://openalex.org/W6737744342","https://openalex.org/W6754681440","https://openalex.org/W6755190144","https://openalex.org/W6763225475","https://openalex.org/W6766155558"],"related_works":["https://openalex.org/W638577851","https://openalex.org/W2968354375","https://openalex.org/W2359440920","https://openalex.org/W2889550857","https://openalex.org/W3013372948","https://openalex.org/W3135997498","https://openalex.org/W4242417330","https://openalex.org/W4388282505","https://openalex.org/W3198631238","https://openalex.org/W4255657129"],"abstract_inverted_index":{"Together":[0],"with":[1,10,34,78],"various":[2],"hosts":[3,29],"and":[4,27,37,54,64,72,106,131,151,163],"environments,":[5],"ubiquitous":[6],"microbes":[7,26],"interact":[8],"closely":[9],"each":[11],"other":[12],"forming":[13],"an":[14,99],"intertwined":[15],"system":[16],"or":[17,30],"community.":[18],"Of":[19],"interest,":[20],"shifts":[21],"of":[22,56,74,82,141,160,172,175],"the":[23,52,66,70,79,83,92,158,173],"relationships":[24],"between":[25],"their":[28],"environments":[31],"are":[32],"associated":[33],"critical":[35],"diseases":[36],"ecological":[38],"changes.":[39],"While":[40],"advances":[41],"in":[42,129,170],"high-throughput":[43],"Omics":[44],"technologies":[45],"offer":[46],"a":[47,86,165],"great":[48],"opportunity":[49],"for":[50,167],"understanding":[51,116,174],"structures":[53],"functions":[55],"microbiome,":[57],"it":[58],"is":[59],"still":[60],"challenging":[61],"to":[62,89,102,113,149,153],"analyse":[63],"interpret":[65],"omics":[67],"data.":[68],"Specifically,":[69],"heterogeneity":[71],"diversity":[73],"microbial":[75,142,176],"communities,":[76],"compounded":[77],"large":[80],"size":[81],"datasets,":[84],"impose":[85],"tremendous":[87],"challenge":[88],"mechanistically":[90],"elucidate":[91],"complex":[93],"communities.":[94,177],"Fortunately,":[95],"network":[96,108,123,138],"analyses":[97],"provide":[98,164],"efficient":[100],"way":[101],"tackle":[103],"this":[104,115],"problem,":[105],"several":[107],"approaches":[109],"have":[110,126],"been":[111,127],"proposed":[112],"improve":[114],"recently.":[117],"Here,":[118],"we":[119,135,156],"systemically":[120],"illustrate":[121],"these":[122],"theories":[124],"that":[125],"used":[128],"biological":[130],"biomedical":[132],"research.":[133],"Then,":[134],"review":[136],"existing":[137],"modelling":[139],"methods":[140],"studies":[143,162],"at":[144],"multiple":[145],"layers":[146],"from":[147],"metagenomics":[148],"metabolomics":[150],"further":[152,168],"multi-omics.":[154],"Lastly,":[155],"discuss":[157],"limitations":[159],"present":[161],"perspective":[166],"directions":[169],"support":[171]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":17},{"year":2024,"cited_by_count":26},{"year":2023,"cited_by_count":16},{"year":2022,"cited_by_count":13},{"year":2021,"cited_by_count":11},{"year":2020,"cited_by_count":7}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
