{"id":"https://openalex.org/W2115722741","doi":"https://doi.org/10.1093/bib/4.3.260","title":"Computational knowledge integration in biopharmaceutical research","display_name":"Computational knowledge integration in biopharmaceutical research","publication_year":2003,"publication_date":"2003-01-01","ids":{"openalex":"https://openalex.org/W2115722741","doi":"https://doi.org/10.1093/bib/4.3.260","mag":"2115722741","pmid":"https://pubmed.ncbi.nlm.nih.gov/14582520"},"language":"en","primary_location":{"id":"doi:10.1093/bib/4.3.260","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/4.3.260","pdf_url":"https://academic.oup.com/bib/article-pdf/4/3/260/9731804/260.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bib/article-pdf/4/3/260/9731804/260.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5043857944","display_name":"D. Ficenec","orcid":null},"institutions":[{"id":"https://openalex.org/I4210151462","display_name":"New York Genome Center","ror":"https://ror.org/05wf2ga96","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210151462"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"D. Ficenec","raw_affiliation_strings":["Washington University Genome Center, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Washington University Genome Center, USA","institution_ids":["https://openalex.org/I4210151462"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5043857944"],"corresponding_institution_ids":["https://openalex.org/I4210151462"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":0.5701,"has_fulltext":true,"cited_by_count":41,"citation_normalized_percentile":{"value":0.64898651,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"4","issue":"3","first_page":"260","last_page":"278"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9947999715805054,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9911999702453613,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6977396607398987},{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.5910742878913879},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.4961903691291809},{"id":"https://openalex.org/keywords/knowledge-management","display_name":"Knowledge management","score":0.4878387749195099},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.4610968828201294},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4393160343170166},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4193430244922638}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6977396607398987},{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.5910742878913879},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.4961903691291809},{"id":"https://openalex.org/C56739046","wikidata":"https://www.wikidata.org/wiki/Q192060","display_name":"Knowledge management","level":1,"score":0.4878387749195099},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.4610968828201294},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4393160343170166},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4193430244922638},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004345","descriptor_name":"Drug Industry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D004345","descriptor_name":"Drug Industry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D004345","descriptor_name":"Drug Industry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012107","descriptor_name":"Research Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012107","descriptor_name":"Research Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012107","descriptor_name":"Research Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019359","descriptor_name":"Knowledge","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019359","descriptor_name":"Knowledge","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019359","descriptor_name":"Knowledge","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019451","descriptor_name":"Information Management","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019451","descriptor_name":"Information Management","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019451","descriptor_name":"Information Management","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/4.3.260","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/4.3.260","pdf_url":"https://academic.oup.com/bib/article-pdf/4/3/260/9731804/260.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:14582520","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/14582520","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:dash.harvard.edu:1/10591706","is_oa":true,"landing_page_url":"http://nrs.harvard.edu/urn-3:HUL.InstRepos:10591706","pdf_url":null,"source":{"id":"https://openalex.org/S4306401540","display_name":"Digital Access to Scholarship at Harvard (DASH) (Harvard University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I136199984","host_organization_name":"Harvard University","host_organization_lineage":["https://openalex.org/I136199984"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"}],"best_oa_location":{"id":"doi:10.1093/bib/4.3.260","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/4.3.260","pdf_url":"https://academic.oup.com/bib/article-pdf/4/3/260/9731804/260.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320320291","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2115722741.pdf","grobid_xml":"https://content.openalex.org/works/W2115722741.grobid-xml"},"referenced_works_count":56,"referenced_works":["https://openalex.org/W45955907","https://openalex.org/W1505561515","https://openalex.org/W1758628264","https://openalex.org/W1965864098","https://openalex.org/W1975680001","https://openalex.org/W1976419663","https://openalex.org/W1996662136","https://openalex.org/W2009570821","https://openalex.org/W2032338665","https://openalex.org/W2037500862","https://openalex.org/W2038876196","https://openalex.org/W2047796164","https://openalex.org/W2054251921","https://openalex.org/W2056897143","https://openalex.org/W2061439657","https://openalex.org/W2074906123","https://openalex.org/W2084107549","https://openalex.org/W2100083453","https://openalex.org/W2103017472","https://openalex.org/W2108401170","https://openalex.org/W2111973517","https://openalex.org/W2112811019","https://openalex.org/W2113221321","https://openalex.org/W2118402262","https://openalex.org/W2129451985","https://openalex.org/W2148853951","https://openalex.org/W2150994370","https://openalex.org/W2151326548","https://openalex.org/W2156877380","https://openalex.org/W2159845262","https://openalex.org/W2160453515","https://openalex.org/W2161536823","https://openalex.org/W2165011536","https://openalex.org/W2165270659","https://openalex.org/W2168491690","https://openalex.org/W2175268987","https://openalex.org/W2202860973","https://openalex.org/W2229567512","https://openalex.org/W2580812415","https://openalex.org/W2628074563","https://openalex.org/W2986179470","https://openalex.org/W4230553559","https://openalex.org/W4249852273","https://openalex.org/W6641506132","https://openalex.org/W6649597748","https://openalex.org/W6660160989","https://openalex.org/W6664149844","https://openalex.org/W6664707127","https://openalex.org/W6669037954","https://openalex.org/W6674830921","https://openalex.org/W6676510815","https://openalex.org/W6677552901","https://openalex.org/W6678067405","https://openalex.org/W6679983441","https://openalex.org/W6682272448","https://openalex.org/W6683276083"],"related_works":["https://openalex.org/W2392768766","https://openalex.org/W2058118494","https://openalex.org/W2501188010","https://openalex.org/W2095118173","https://openalex.org/W2382021449","https://openalex.org/W848359858","https://openalex.org/W2106424170","https://openalex.org/W4299935056","https://openalex.org/W2768810474","https://openalex.org/W2134629545"],"abstract_inverted_index":{"An":[0],"initiative":[1,22],"to":[2,82,113,126,149],"increase":[3,83],"biopharmaceutical":[4],"research":[5,97,147],"productivity":[6,85],"by":[7,89],"capturing,":[8],"sharing":[9],"and":[10,28,74,118],"computationally":[11],"integrating":[12],"proprietary":[13],"scientific":[14,84],"discoveries":[15],"with":[16,65],"public":[17,60],"knowledge":[18],"is":[19,132],"described.":[20],"This":[21,77,141],"involves":[23],"both":[24],"organisational":[25,92],"process":[26],"change":[27],"multiple":[29],"interoperating":[30],"software":[31,34],"systems.":[32],"The":[33],"components":[35,107],"rely":[36],"on":[37,100],"mutually":[38],"supporting":[39],"integration":[40],"techniques.":[41],"These":[42],"include":[43],"a":[44,115],"richly":[45],"structured":[46],"ontology,":[47],"statistical":[48],"analysis":[49,136],"of":[50,59,95,121,129,137,157],"experimental":[51],"data":[52],"against":[53],"stored":[54],"conclusions,":[55],"natural":[56],"language":[57],"processing":[58],"literature,":[61],"secure":[62],"document":[63],"repositories":[64],"lightweight":[66],"metadata,":[67],"web":[68,72],"services":[69],"integration,":[70],"enterprise":[71,88],"portals":[73],"relational":[75],"databases.":[76],"approach":[78],"has":[79,109],"already":[80],"begun":[81],"in":[86,135,143],"our":[87,146],"creating":[90],"an":[91],"memory":[93],"(OM)":[94],"internal":[96],"findings,":[98],"accessible":[99],"the":[101],"web.":[102],"Through":[103],"bringing":[104],"together":[105],"these":[106],"it":[108],"also":[110],"been":[111],"possible":[112],"construct":[114],"very":[116],"large":[117],"expanding":[119],"repository":[120,128],"biological":[122],"pathway":[123],"information":[124],"linked":[125],"this":[127],"findings":[130],"which":[131],"extremely":[133],"useful":[134],"DNA":[138],"microarray":[139],"data.":[140],"repository,":[142],"turn,":[144],"enables":[145],"paradigm":[148],"be":[150],"shifted":[151],"towards":[152],"more":[153],"comprehensive":[154],"systems-based":[155],"understandings":[156],"drug":[158],"action.":[159]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":6},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":3}],"updated_date":"2026-07-02T09:51:11.867554","created_date":"2025-10-10T00:00:00"}
