{"id":"https://openalex.org/W2118140448","doi":"https://doi.org/10.1093/bib/2.4.319","title":"Open Source Software meets gene expression","display_name":"Open Source Software meets gene expression","publication_year":2001,"publication_date":"2001-01-01","ids":{"openalex":"https://openalex.org/W2118140448","doi":"https://doi.org/10.1093/bib/2.4.319","mag":"2118140448","pmid":"https://pubmed.ncbi.nlm.nih.gov/11808744"},"language":"en","primary_location":{"id":"doi:10.1093/bib/2.4.319","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/2.4.319","pdf_url":"https://academic.oup.com/bib/article-pdf/2/4/319/666213/319.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/article-pdf/2/4/319/666213/319.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5072044998","display_name":"Jason Stewart","orcid":null},"institutions":[{"id":"https://openalex.org/I40695006","display_name":"Open Geospatial Consortium","ror":"https://ror.org/00fsdxs93","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I40695006"]},{"id":"https://openalex.org/I4210104703","display_name":"National Open University","ror":"https://ror.org/01d81q939","country_code":"TW","type":"education","lineage":["https://openalex.org/I4210104703"]}],"countries":["TW","US"],"is_corresponding":true,"raw_author_name":"J. E. Stewart","raw_affiliation_strings":["Open Informatics, Albuquerque, NM 87108, USA. jason@openinformatics.com","Open Informatics, Albuquerque, NM 87108, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Open Informatics, Albuquerque, NM 87108, USA. jason@openinformatics.com","institution_ids":["https://openalex.org/I40695006"]},{"raw_affiliation_string":"Open Informatics, Albuquerque, NM 87108, USA","institution_ids":["https://openalex.org/I4210104703"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5072044998"],"corresponding_institution_ids":["https://openalex.org/I40695006","https://openalex.org/I4210104703"],"apc_list":{"value":3885,"currency":"USD","value_usd":3885},"apc_paid":null,"fwci":1.7462,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.89849881,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"2","issue":"4","first_page":"319","last_page":"328"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9614999890327454,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9614999890327454,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T13280","display_name":"Biomedical and Engineering Education","score":0.9459999799728394,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11675","display_name":"Open Source Software Innovations","score":0.9286999702453613,"subfield":{"id":"https://openalex.org/subfields/1706","display_name":"Computer Science Applications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/open-source","display_name":"Open source","score":0.7244817018508911},{"id":"https://openalex.org/keywords/open-source-software","display_name":"Open source software","score":0.7108131647109985},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5984123349189758},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5422109365463257},{"id":"https://openalex.org/keywords/software-development","display_name":"Software development","score":0.5358219146728516},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.5213483572006226},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5136305689811707},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.5025947093963623},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.48219242691993713},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3410259485244751},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.15685150027275085},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.08657842874526978}],"concepts":[{"id":"https://openalex.org/C3018397939","wikidata":"https://www.wikidata.org/wiki/Q3644502","display_name":"Open source","level":3,"score":0.7244817018508911},{"id":"https://openalex.org/C2988343187","wikidata":"https://www.wikidata.org/wiki/Q1130645","display_name":"Open source software","level":3,"score":0.7108131647109985},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5984123349189758},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5422109365463257},{"id":"https://openalex.org/C529173508","wikidata":"https://www.wikidata.org/wiki/Q638608","display_name":"Software development","level":3,"score":0.5358219146728516},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.5213483572006226},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5136305689811707},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.5025947093963623},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.48219242691993713},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3410259485244751},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.15685150027275085},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.08657842874526978},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005380","descriptor_name":"Financing, Government","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005380","descriptor_name":"Financing, Government","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005380","descriptor_name":"Financing, Government","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":"Q000191","qualifier_name":"economics","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":"Q000191","qualifier_name":"economics","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":"Q000191","qualifier_name":"economics","is_major_topic":true},{"descriptor_ui":"D012985","descriptor_name":"Software Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012985","descriptor_name":"Software Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012985","descriptor_name":"Software Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019992","descriptor_name":"Databases as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019992","descriptor_name":"Databases as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019992","descriptor_name":"Databases as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D022126","descriptor_name":"Access to Information","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D022126","descriptor_name":"Access to Information","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D022126","descriptor_name":"Access to Information","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/2.4.319","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/2.4.319","pdf_url":"https://academic.oup.com/bib/article-pdf/2/4/319/666213/319.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:11808744","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/11808744","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":"Journal Article"}],"best_oa_location":{"id":"doi:10.1093/bib/2.4.319","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/2.4.319","pdf_url":"https://academic.oup.com/bib/article-pdf/2/4/319/666213/319.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9","score":0.47999998927116394}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2118140448.pdf"},"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W4376877853","https://openalex.org/W4250928611","https://openalex.org/W4232280318","https://openalex.org/W2063332991","https://openalex.org/W167327709","https://openalex.org/W4387839566","https://openalex.org/W4210922265","https://openalex.org/W4319870556","https://openalex.org/W1985865858","https://openalex.org/W166480398"],"abstract_inverted_index":{"Use":[0],"of":[1,15,41,44,50,61],"the":[2,42,48],"Open":[3,76],"Source":[4],"Software":[5],"(OSS)":[6],"development":[7,34,38],"model":[8,35,46],"has":[9],"been":[10],"crucial":[11],"in":[12,47],"a":[13,32,59],"number":[14],"recent":[16],"technological":[17],"areas,":[18],"including":[19],"operating":[20],"systems,":[21],"applications":[22],"and":[23,39,68],"bioinformatics.":[24],"The":[25,55],"rationale":[26],"for":[27],"why":[28,62],"OSS":[29,67],"is":[30],"often":[31],"better":[33],"than":[36],"proprietary":[37],"some":[40],"results":[43],"this":[45],"field":[49],"Gene":[51],"Expression":[52],"are":[53],"reviewed.":[54],"paper":[56],"concludes":[57],"with":[58],"discussion":[60],"funding":[63],"agencies":[64],"should":[65],"endorse":[66],"require":[69],"funded":[70],"software":[71],"projects":[72],"to":[73],"be":[74],"released":[75],"Source.":[77]},"counts_by_year":[],"updated_date":"2026-08-21T09:56:20.448147","created_date":"2025-10-10T00:00:00"}
