{"id":"https://openalex.org/W2163669353","doi":"https://doi.org/10.1093/bib/2.2.181","title":"On the parallelisation of bioinformatics applications","display_name":"On the parallelisation of bioinformatics applications","publication_year":2001,"publication_date":"2001-01-01","ids":{"openalex":"https://openalex.org/W2163669353","doi":"https://doi.org/10.1093/bib/2.2.181","mag":"2163669353","pmid":"https://pubmed.ncbi.nlm.nih.gov/11465735"},"language":"en","primary_location":{"id":"doi:10.1093/bib/2.2.181","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/2.2.181","pdf_url":"https://academic.oup.com/bib/article-pdf/2/2/181/659425/181.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/article-pdf/2/2/181/659425/181.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5082510742","display_name":"Oswaldo Trelles","orcid":"https://orcid.org/0000-0003-1554-8987"},"institutions":[{"id":"https://openalex.org/I82767444","display_name":"Universidad de M\u00e1laga","ror":"https://ror.org/036b2ww28","country_code":"ES","type":"education","lineage":["https://openalex.org/I82767444"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"O. Trelles","raw_affiliation_strings":["Computer Architecture Department, University of Malaga, Spain. ots@ac.uma.es"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Architecture Department, University of Malaga, Spain. ots@ac.uma.es","institution_ids":["https://openalex.org/I82767444"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5082510742"],"corresponding_institution_ids":["https://openalex.org/I82767444"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":0.9274,"has_fulltext":false,"cited_by_count":33,"citation_normalized_percentile":{"value":0.73990118,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"2","issue":"2","first_page":"181","last_page":"194"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9936000108718872,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9936000108718872,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9907000064849854,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.9902999997138977,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8384854793548584},{"id":"https://openalex.org/keywords/range","display_name":"Range (aeronautics)","score":0.5987111330032349},{"id":"https://openalex.org/keywords/parallelism","display_name":"Parallelism (grammar)","score":0.5856948494911194},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.5453164577484131},{"id":"https://openalex.org/keywords/shared-memory","display_name":"Shared memory","score":0.5201994776725769},{"id":"https://openalex.org/keywords/scheduling","display_name":"Scheduling (production processes)","score":0.4970584213733673},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4960199296474457},{"id":"https://openalex.org/keywords/distributed-memory","display_name":"Distributed memory","score":0.4621267020702362},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3696003556251526},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.29159945249557495}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8384854793548584},{"id":"https://openalex.org/C204323151","wikidata":"https://www.wikidata.org/wiki/Q905424","display_name":"Range (aeronautics)","level":2,"score":0.5987111330032349},{"id":"https://openalex.org/C2781172179","wikidata":"https://www.wikidata.org/wiki/Q853109","display_name":"Parallelism (grammar)","level":2,"score":0.5856948494911194},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.5453164577484131},{"id":"https://openalex.org/C133875982","wikidata":"https://www.wikidata.org/wiki/Q764810","display_name":"Shared memory","level":2,"score":0.5201994776725769},{"id":"https://openalex.org/C206729178","wikidata":"https://www.wikidata.org/wiki/Q2271896","display_name":"Scheduling (production processes)","level":2,"score":0.4970584213733673},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4960199296474457},{"id":"https://openalex.org/C91481028","wikidata":"https://www.wikidata.org/wiki/Q1054686","display_name":"Distributed memory","level":3,"score":0.4621267020702362},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3696003556251526},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.29159945249557495},{"id":"https://openalex.org/C159985019","wikidata":"https://www.wikidata.org/wiki/Q181790","display_name":"Composite material","level":1,"score":0.0},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C21547014","wikidata":"https://www.wikidata.org/wiki/Q1423657","display_name":"Operations management","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003199","descriptor_name":"Computer Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003199","descriptor_name":"Computer Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003199","descriptor_name":"Computer Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/2.2.181","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/2.2.181","pdf_url":"https://academic.oup.com/bib/article-pdf/2/2/181/659425/181.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:11465735","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/11465735","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bib/2.2.181","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/2.2.181","pdf_url":"https://academic.oup.com/bib/article-pdf/2/2/181/659425/181.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4300000071525574,"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":41,"referenced_works":["https://openalex.org/W29714126","https://openalex.org/W191281502","https://openalex.org/W1504702575","https://openalex.org/W1511321001","https://openalex.org/W1573785911","https://openalex.org/W1575841671","https://openalex.org/W1605134757","https://openalex.org/W1715248483","https://openalex.org/W1949992331","https://openalex.org/W1978526324","https://openalex.org/W1990611017","https://openalex.org/W1991062093","https://openalex.org/W1998245756","https://openalex.org/W2004575181","https://openalex.org/W2007184488","https://openalex.org/W2007554892","https://openalex.org/W2014141322","https://openalex.org/W2015292449","https://openalex.org/W2022058405","https://openalex.org/W2025554091","https://openalex.org/W2029195137","https://openalex.org/W2034767282","https://openalex.org/W2039509794","https://openalex.org/W2055043387","https://openalex.org/W2064296317","https://openalex.org/W2068083406","https://openalex.org/W2074231493","https://openalex.org/W2079145549","https://openalex.org/W2087064593","https://openalex.org/W2089221493","https://openalex.org/W2096943217","https://openalex.org/W2105926960","https://openalex.org/W2106882534","https://openalex.org/W2108167744","https://openalex.org/W2113580605","https://openalex.org/W2120588157","https://openalex.org/W2126278074","https://openalex.org/W2143667865","https://openalex.org/W2152326664","https://openalex.org/W2154284350","https://openalex.org/W2157445213"],"related_works":["https://openalex.org/W2026512611","https://openalex.org/W1991539482","https://openalex.org/W1985165680","https://openalex.org/W4245497162","https://openalex.org/W2070983336","https://openalex.org/W1837558792","https://openalex.org/W2363502211","https://openalex.org/W1982466989","https://openalex.org/W1207613137","https://openalex.org/W2011279392"],"abstract_inverted_index":{"This":[0,55],"paper":[1],"surveys":[2],"the":[3,9,14],"computational":[4,25,58],"strategies":[5,45,71],"followed":[6],"to":[7,34,61],"parallelise":[8],"most":[10],"used":[11],"software":[12],"in":[13],"bioinformatics":[15],"arena.":[16],"The":[17],"studied":[18],"algorithms":[19],"are":[20,46],"computationally":[21],"expensive":[22],"and":[23,42,69,86],"their":[24],"patterns":[26,38],"range":[27,75],"from":[28],"regular,":[29],"such":[30],"as":[31],"database-searching":[32],"applications,":[33],"very":[35,50],"irregularly":[36],"structured":[37],"(phylogenetic":[39],"trees).":[40],"Fine-":[41],"coarse-grained":[43],"parallel":[44,66],"discussed":[47],"for":[48,72],"these":[49],"diverse":[51],"sets":[52],"of":[53,76],"applications.":[54],"overview":[56],"outlines":[57],"issues":[59],"related":[60],"parallelism,":[62],"physical":[63],"machine":[64],"models,":[65],"programming":[67],"approaches":[68],"scheduling":[70],"a":[73],"broad":[74],"computer":[77],"architectures.":[78,89],"In":[79],"particular,":[80],"it":[81],"deals":[82],"with":[83],"shared,":[84],"distributed":[85],"shared/distributed":[87],"memory":[88]},"counts_by_year":[{"year":2019,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":6},{"year":2012,"cited_by_count":2}],"updated_date":"2026-05-19T21:40:30.786675","created_date":"2025-10-10T00:00:00"}
