{"id":"https://openalex.org/W2571859658","doi":"https://doi.org/10.1090/dimacs/054/07","title":"On combinatorial DNA word design","display_name":"On combinatorial DNA word design","publication_year":2000,"publication_date":"2000-11-14","ids":{"openalex":"https://openalex.org/W2571859658","doi":"https://doi.org/10.1090/dimacs/054/07","mag":"2571859658"},"language":"en","primary_location":{"id":"doi:10.1090/dimacs/054/07","is_oa":false,"landing_page_url":"https://doi.org/10.1090/dimacs/054/07","pdf_url":null,"source":{"id":"https://openalex.org/S4210177973","display_name":"DIMACS series in discrete mathematics and theoretical computer science","issn_l":"1052-1798","issn":["1052-1798","2472-4793"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"DIMACS Series in Discrete Mathematics and Theoretical Computer Science","raw_type":"book-chapter"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5109502195","display_name":"Amit Marathe","orcid":null},"institutions":[{"id":"https://openalex.org/I135310074","display_name":"University of Wisconsin\u2013Madison","ror":"https://ror.org/01y2jtd41","country_code":"US","type":"education","lineage":["https://openalex.org/I135310074"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Amit Marathe","raw_affiliation_strings":["Computer Sciences Department, University of Wisconsin, Madison WI 53706, USA#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Sciences Department, University of Wisconsin, Madison WI 53706, USA#TAB#","institution_ids":["https://openalex.org/I135310074"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015034623","display_name":"Anne Condon","orcid":"https://orcid.org/0000-0003-1458-1259"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Anne Condon","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5064887735","display_name":"Robert M. Corn","orcid":"https://orcid.org/0000-0002-4756-2161"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Robert Corn","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5109502195"],"corresponding_institution_ids":["https://openalex.org/I135310074"],"apc_list":null,"apc_paid":null,"fwci":3.6932,"has_fulltext":false,"cited_by_count":28,"citation_normalized_percentile":{"value":0.93531429,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"75","last_page":"89"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10207","display_name":"Advanced biosensing and bioanalysis techniques","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9473000168800354,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/alphabet","display_name":"Alphabet","score":0.791452169418335},{"id":"https://openalex.org/keywords/word","display_name":"Word (group theory)","score":0.5966408848762512},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.5233216285705566},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4959615170955658},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.47767218947410583},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.3793368339538574},{"id":"https://openalex.org/keywords/discrete-mathematics","display_name":"Discrete mathematics","score":0.3457869291305542},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3436781167984009},{"id":"https://openalex.org/keywords/linguistics","display_name":"Linguistics","score":0.11583817005157471},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.09711810946464539}],"concepts":[{"id":"https://openalex.org/C112876837","wikidata":"https://www.wikidata.org/wiki/Q837518","display_name":"Alphabet","level":2,"score":0.791452169418335},{"id":"https://openalex.org/C90805587","wikidata":"https://www.wikidata.org/wiki/Q10944557","display_name":"Word (group theory)","level":2,"score":0.5966408848762512},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.5233216285705566},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4959615170955658},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.47767218947410583},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.3793368339538574},{"id":"https://openalex.org/C118615104","wikidata":"https://www.wikidata.org/wiki/Q121416","display_name":"Discrete mathematics","level":1,"score":0.3457869291305542},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3436781167984009},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.11583817005157471},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.09711810946464539},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1090/dimacs/054/07","is_oa":false,"landing_page_url":"https://doi.org/10.1090/dimacs/054/07","pdf_url":null,"source":{"id":"https://openalex.org/S4210177973","display_name":"DIMACS series in discrete mathematics and theoretical computer science","issn_l":"1052-1798","issn":["1052-1798","2472-4793"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"DIMACS Series in Discrete Mathematics and Theoretical Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.50.9265","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.50.9265","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ftp://corninfo2.chem.wisc.edu/Papers/combo.ps","raw_type":"text"},{"id":"mag:2571859658","is_oa":false,"landing_page_url":"https://dblp.uni-trier.de/db/conf/dimacs/dimacs54.html#MaratheCC99","pdf_url":null,"source":null,"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W1983896069","https://openalex.org/W86087590","https://openalex.org/W2135995702","https://openalex.org/W1977312644","https://openalex.org/W43688602","https://openalex.org/W1552018910","https://openalex.org/W2031214412","https://openalex.org/W2096307073","https://openalex.org/W2062218409","https://openalex.org/W2014462280","https://openalex.org/W1689214120","https://openalex.org/W2074993099","https://openalex.org/W2170931604","https://openalex.org/W2140848315","https://openalex.org/W1582738019","https://openalex.org/W1580726254","https://openalex.org/W1567090568","https://openalex.org/W1536588839","https://openalex.org/W2043091782","https://openalex.org/W1970529854"],"abstract_inverted_index":{"We":[0,166],"consider":[1],"the":[2,14,30,98,103,122,143,150,156,161],"problem":[3,26],"of":[4,10,32,74,100,106,125,145,155],"designing":[5],"DNA":[6,40,45,127,146],"codes,":[7],"namely":[8],"sets":[9],"equi-length":[11],"words":[12,75],"over":[13],"alphabet":[15],"fA;":[16],"C;":[17],"G;":[18],"Tg":[19],"that":[20,58,139,149],"satisfy":[21],"certain":[22],"combinatorial":[23],"constraints.":[24],"This":[25],"is":[27,140,148],"motivated":[28],"by":[29],"task":[31],"reliably":[33],"storing":[34],"and":[35,89,95,102,118,129,153,159],"retrieving":[36],"information":[37],"in":[38,44,52,78],"synthetic":[39],"strands,":[41],"for":[42,71,132],"use":[43],"computing":[46],"or":[47],"as":[48,69],"molecular":[49],"bar":[50],"codes":[51,128,147],"chemical":[53],"libraries.":[54],"The":[55],"primary":[56],"constraints":[57],"we":[59,114],"consider,":[60],"defined":[61],"with":[62],"respect":[63],"to":[64,142],"a":[65,79],"parameter":[66],"d,":[67],"are":[68,82],"follows:":[70],"every":[72],"pair":[73],"w;":[76],"x":[77,90],"code,":[80],"there":[81],"at":[83],"least":[84],"d":[85],"mismatches":[86],"between":[87,97],"w":[88,92,101],"if":[91],"6=":[93],"x;":[94],"also":[96],"reverse":[99],"Watson-Crick":[104],"complement":[105],"x.":[107],"Extending":[108],"classical":[109],"results":[110],"from":[111],"coding":[112],"theory,":[113],"present":[115],"several":[116],"upper":[117],"lower":[119],"bounds":[120],"on":[121],"maximum":[123],"size":[124],"such":[126,134],"give":[130],"methods":[131],"constructing":[133],"codes.":[135],"An":[136],"additional":[137],"constraint":[138],"relevant":[141],"design":[144],"free":[151],"energies":[152],"enthalpies":[154],"code":[157],"words,":[158],"thus":[160],"melting":[162],"temperatures,":[163],"be":[164],"similar.":[165],"describe":[167],"dynamic":[168],"programming":[169],"algo...":[170]},"counts_by_year":[{"year":2020,"cited_by_count":2},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":1}],"updated_date":"2026-05-05T08:41:31.759640","created_date":"2025-10-10T00:00:00"}
