{"id":"https://openalex.org/W2407185771","doi":"https://doi.org/10.1090/dimacs/023/03","title":"Global optimization methods for protein folding problems","display_name":"Global optimization methods for protein folding problems","publication_year":1995,"publication_date":"1995-11-15","ids":{"openalex":"https://openalex.org/W2407185771","doi":"https://doi.org/10.1090/dimacs/023/03","mag":"2407185771"},"language":"en","primary_location":{"id":"doi:10.1090/dimacs/023/03","is_oa":false,"landing_page_url":"https://doi.org/10.1090/dimacs/023/03","pdf_url":null,"source":{"id":"https://openalex.org/S4210177973","display_name":"DIMACS series in discrete mathematics and theoretical computer science","issn_l":"1052-1798","issn":["1052-1798","2472-4793"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"DIMACS Series in Discrete Mathematics and Theoretical Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5110729604","display_name":"Richard Byrd","orcid":null},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Richard Byrd","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010432535","display_name":"Elizabeth Eskow","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Elizabeth Eskow","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042967020","display_name":"Andr\u00e9 van der Hoek","orcid":"https://orcid.org/0000-0001-7917-932X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Andre Van der Hoek","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062969932","display_name":"Robert D. Schnabel","orcid":"https://orcid.org/0000-0001-5018-7641"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Robert Schnabel","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109880787","display_name":"Chung-Shang Shao","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Chung-Shang Shao","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"last","author":{"id":null,"display_name":"Zhihong Zou","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Zhihong Zou","raw_affiliation_strings":[],"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5110729604"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":1.5512,"has_fulltext":true,"cited_by_count":16,"citation_normalized_percentile":{"value":0.84946237,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"29","last_page":"39"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.944599986076355,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.944599986076355,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.47671881318092346},{"id":"https://openalex.org/keywords/folding","display_name":"Folding (DSP implementation)","score":0.4518829584121704},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3690612316131592},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1569574475288391},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.1274988055229187},{"id":"https://openalex.org/keywords/mechanical-engineering","display_name":"Mechanical engineering","score":0.04473799467086792}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.47671881318092346},{"id":"https://openalex.org/C2776545253","wikidata":"https://www.wikidata.org/wiki/Q5464292","display_name":"Folding (DSP implementation)","level":2,"score":0.4518829584121704},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3690612316131592},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1569574475288391},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.1274988055229187},{"id":"https://openalex.org/C78519656","wikidata":"https://www.wikidata.org/wiki/Q101333","display_name":"Mechanical engineering","level":1,"score":0.04473799467086792}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1090/dimacs/023/03","is_oa":false,"landing_page_url":"https://doi.org/10.1090/dimacs/023/03","pdf_url":null,"source":{"id":"https://openalex.org/S4210177973","display_name":"DIMACS series in discrete mathematics and theoretical computer science","issn_l":"1052-1798","issn":["1052-1798","2472-4793"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"DIMACS Series in Discrete Mathematics and Theoretical Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.126.6641","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.126.6641","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.ics.uci.edu/~andre/papers/B1.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.2.2157","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.2.2157","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.mat.univie.ac.at/~neum/glopt/mss/ByrEH91.ps.gz","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/7","score":0.8700000047683716,"display_name":"Affordable and clean energy"}],"awards":[{"id":"https://openalex.org/G177218894","display_name":null,"funder_award_id":"F49620","funder_id":"https://openalex.org/F4320338279","funder_display_name":"Air Force Office of Scientific Research"},{"id":"https://openalex.org/G3219100237","display_name":"Software Capitalization:  A Research Facility for Numerical Computation and Software Engineering.","funder_award_id":"8922510","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G4497804468","display_name":null,"funder_award_id":"CDA-8922510","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G5542947041","display_name":"Developing and Understanding Methods for Nonlinear          Optimization","funder_award_id":"9101795","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7826928408","display_name":null,"funder_award_id":"AFOSR-90-0109","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320338279","display_name":"Air Force Office of Scientific Research","ror":"https://ror.org/011e9bt93"},{"id":"https://openalex.org/F4320338281","display_name":"Army Research Office","ror":"https://ror.org/05epdh915"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":13,"referenced_works":["https://openalex.org/W115188222","https://openalex.org/W235694958","https://openalex.org/W1994586626","https://openalex.org/W2036424772","https://openalex.org/W2045282472","https://openalex.org/W2050069452","https://openalex.org/W2071071467","https://openalex.org/W2075141102","https://openalex.org/W2094654075","https://openalex.org/W4251892789","https://openalex.org/W6601616117","https://openalex.org/W6608328211","https://openalex.org/W6756447727"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W2350741829","https://openalex.org/W2530322880","https://openalex.org/W1596801655","https://openalex.org/W2359140296"],"abstract_inverted_index":{".":[0],"The":[1,70,106],"problem":[2],"of":[3,9,23,39,45,55,73,84,115],"finding":[4],"the":[5,18,24,56,85,90,96,116,130,136,148],"naturally":[6],"occurring":[7],"structure":[8],"a":[10,29,36,42,62],"protein":[11,137],"is":[12,27],"believed":[13],"to":[14,16,101,141,151],"correspond":[15],"minimizing":[17],"free,":[19],"or":[20],"potential,":[21],"energy":[22,86],"protein.":[25],"This":[26,59],"generally":[28],"very":[30,153],"difficult":[31],"global":[32,57,64,120],"optimization":[33,65],"problem,":[34],"with":[35,50,125,139],"large":[37],"number":[38,44],"parameters":[40],"and":[41],"huge":[43],"local":[46,82,99,104,126],"minimizers":[47,83,100],"including":[48,118],"many":[49],"function":[51],"values":[52],"near":[53],"that":[54,77,93,110],"minimizer.":[58],"paper":[60],"presents":[61],"new":[63],"method":[66,71,107,149],"for":[67],"such":[68],"problems.":[69],"consists":[72],"an":[74],"initial":[75],"phase":[76,92],"locates":[78],"some":[79],"reasonably":[80],"low":[81],"function,":[87],"followed":[88],"by":[89],"main":[91],"progresses":[94],"from":[95],"best":[97],"current":[98],"even":[102],"lower":[103],"minimizers.":[105],"combines":[108],"portions":[109],"work":[111],"on":[112,135],"small":[113],"subsets":[114],"parameters,":[117],"small-scale":[119],"optimizations":[121],"using":[122],"stochastic":[123],"methods,":[124],"minimizations":[127],"involving":[128],"all":[129],"parameters.":[131],"In":[132],"computational":[133],"tests":[134],"polyalanine":[138],"up":[140],"58":[142],"amino":[143],"acids":[144],"(116":[145],"internal":[146],"parameters),":[147],"appears":[150],"be":[152],"su...":[154]},"counts_by_year":[],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
