{"id":"https://openalex.org/W2460641564","doi":"https://doi.org/10.1089/cmb.2015.0215","title":"CsSNP: A Web-Based Tool for the Detecting of Comparative Segments SNPs","display_name":"CsSNP: A Web-Based Tool for the Detecting of Comparative Segments SNPs","publication_year":2016,"publication_date":"2016-06-28","ids":{"openalex":"https://openalex.org/W2460641564","doi":"https://doi.org/10.1089/cmb.2015.0215","mag":"2460641564","pmid":"https://pubmed.ncbi.nlm.nih.gov/27347883"},"language":"en","primary_location":{"id":"doi:10.1089/cmb.2015.0215","is_oa":false,"landing_page_url":"https://doi.org/10.1089/cmb.2015.0215","pdf_url":null,"source":{"id":"https://openalex.org/S78571599","display_name":"Journal of Computational Biology","issn_l":"1066-5277","issn":["1066-5277","1557-8666"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320443","host_organization_name":"Mary Ann Liebert, Inc.","host_organization_lineage":["https://openalex.org/P4310320443"],"host_organization_lineage_names":["Mary Ann Liebert, Inc."],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100630721","display_name":"Yi Wang","orcid":"https://orcid.org/0000-0002-4534-8946"},"institutions":[{"id":"https://openalex.org/I74485261","display_name":"Shandong Agricultural University","ror":"https://ror.org/02ke8fw32","country_code":"CN","type":"education","lineage":["https://openalex.org/I74485261"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yi Wang","raw_affiliation_strings":["Key Laboratory of Crop Biology of China, Shandong Agricultural University, Taian, China"],"affiliations":[{"raw_affiliation_string":"Key Laboratory of Crop Biology of China, Shandong Agricultural University, Taian, China","institution_ids":["https://openalex.org/I74485261"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007431035","display_name":"Shuangshuang Wang","orcid":null},"institutions":[{"id":"https://openalex.org/I74485261","display_name":"Shandong Agricultural University","ror":"https://ror.org/02ke8fw32","country_code":"CN","type":"education","lineage":["https://openalex.org/I74485261"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shuangshuang Wang","raw_affiliation_strings":["College of Plant Protection, Shandong Agricultural University, Taian, China"],"affiliations":[{"raw_affiliation_string":"College of Plant Protection, Shandong Agricultural University, Taian, China","institution_ids":["https://openalex.org/I74485261"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028478493","display_name":"Zhou Dongjie","orcid":null},"institutions":[{"id":"https://openalex.org/I74485261","display_name":"Shandong Agricultural University","ror":"https://ror.org/02ke8fw32","country_code":"CN","type":"education","lineage":["https://openalex.org/I74485261"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Dongjie Zhou","raw_affiliation_strings":["College of Plant Protection, Shandong Agricultural University, Taian, China"],"affiliations":[{"raw_affiliation_string":"College of Plant Protection, Shandong Agricultural University, Taian, China","institution_ids":["https://openalex.org/I74485261"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018827744","display_name":"Shuai Yang","orcid":"https://orcid.org/0000-0001-5782-4148"},"institutions":[{"id":"https://openalex.org/I74485261","display_name":"Shandong Agricultural University","ror":"https://ror.org/02ke8fw32","country_code":"CN","type":"education","lineage":["https://openalex.org/I74485261"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shuai Yang","raw_affiliation_strings":["College of Plant Protection, Shandong Agricultural University, Taian, China"],"affiliations":[{"raw_affiliation_string":"College of Plant Protection, Shandong Agricultural University, Taian, China","institution_ids":["https://openalex.org/I74485261"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101963780","display_name":"Yong\u2010Chao Xu","orcid":"https://orcid.org/0000-0002-1378-4049"},"institutions":[{"id":"https://openalex.org/I74485261","display_name":"Shandong Agricultural University","ror":"https://ror.org/02ke8fw32","country_code":"CN","type":"education","lineage":["https://openalex.org/I74485261"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yongchao Xu","raw_affiliation_strings":["College of Plant Protection, Shandong Agricultural University, Taian, China"],"affiliations":[{"raw_affiliation_string":"College of Plant Protection, Shandong Agricultural University, Taian, China","institution_ids":["https://openalex.org/I74485261"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100708269","display_name":"Chao Yang","orcid":"https://orcid.org/0000-0002-8661-3275"},"institutions":[{"id":"https://openalex.org/I74485261","display_name":"Shandong Agricultural University","ror":"https://ror.org/02ke8fw32","country_code":"CN","type":"education","lineage":["https://openalex.org/I74485261"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chao Yang","raw_affiliation_strings":["Key Laboratory of Crop Biology of China, Shandong Agricultural University, Taian, China"],"affiliations":[{"raw_affiliation_string":"Key Laboratory of Crop Biology of China, Shandong Agricultural University, Taian, China","institution_ids":["https://openalex.org/I74485261"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5019008194","display_name":"Long Yang","orcid":"https://orcid.org/0000-0002-9990-8398"},"institutions":[{"id":"https://openalex.org/I74485261","display_name":"Shandong Agricultural University","ror":"https://ror.org/02ke8fw32","country_code":"CN","type":"education","lineage":["https://openalex.org/I74485261"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Long Yang","raw_affiliation_strings":["Agricultural Big-Data Research Center, Shandong Agricultural University, Taian, China","College of Plant Protection, Shandong Agricultural University, Taian, China"],"affiliations":[{"raw_affiliation_string":"Agricultural Big-Data Research Center, Shandong Agricultural University, Taian, China","institution_ids":[]},{"raw_affiliation_string":"College of Plant Protection, Shandong Agricultural University, Taian, China","institution_ids":["https://openalex.org/I74485261"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5019008194"],"corresponding_institution_ids":["https://openalex.org/I74485261"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.03656695,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"23","issue":"7","first_page":"597","last_page":"602"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9951000213623047,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/single-nucleotide-polymorphism","display_name":"Single-nucleotide polymorphism","score":0.5798929929733276},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5788604021072388},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4635540544986725},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.45120322704315186},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.33662956953048706},{"id":"https://openalex.org/keywords/genotype","display_name":"Genotype","score":0.1387961208820343},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1363026201725006}],"concepts":[{"id":"https://openalex.org/C153209595","wikidata":"https://www.wikidata.org/wiki/Q501128","display_name":"Single-nucleotide polymorphism","level":4,"score":0.5798929929733276},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5788604021072388},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4635540544986725},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.45120322704315186},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.33662956953048706},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.1387961208820343},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1363026201725006}],"mesh":[{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1089/cmb.2015.0215","is_oa":false,"landing_page_url":"https://doi.org/10.1089/cmb.2015.0215","pdf_url":null,"source":{"id":"https://openalex.org/S78571599","display_name":"Journal of Computational Biology","issn_l":"1066-5277","issn":["1066-5277","1557-8666"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320443","host_organization_name":"Mary Ann Liebert, Inc.","host_organization_lineage":["https://openalex.org/P4310320443"],"host_organization_lineage_names":["Mary Ann Liebert, Inc."],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computational Biology","raw_type":"journal-article"},{"id":"pmid:27347883","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27347883","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of computational biology : a journal of computational molecular cell biology","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":15,"referenced_works":["https://openalex.org/W1689369637","https://openalex.org/W1963842907","https://openalex.org/W2039552121","https://openalex.org/W2090106709","https://openalex.org/W2103441770","https://openalex.org/W2104699529","https://openalex.org/W2108234281","https://openalex.org/W2108958594","https://openalex.org/W2119180969","https://openalex.org/W2124960286","https://openalex.org/W2150496111","https://openalex.org/W2160814097","https://openalex.org/W2162940287","https://openalex.org/W2163636362","https://openalex.org/W2167014366"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2082860237","https://openalex.org/W2119695867","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W2046158694","https://openalex.org/W2788277189","https://openalex.org/W2013243191","https://openalex.org/W1971568933"],"abstract_inverted_index":{"SNP":[0],"(single":[1],"nucleotide":[2],"polymorphism)":[3],"is":[4,20,58,69,137],"a":[5,24,70,107,139,170,175],"popular":[6],"tool":[7,33,74,141],"for":[8,34,60,129,142],"the":[9,38,54,77,91,103,113,130,156,158,161],"study":[10,55],"of":[11,40,56,94,120,163],"genetic":[12],"diversity,":[13],"evolution,":[14],"and":[15,29,45,52,80,88,100,106,117,124,154,160,165,181],"other":[16],"areas.":[17],"Therefore,":[18],"it":[19],"necessary":[21],"to":[22,83,89,132,145,178],"develop":[23],"convenient,":[25],"utility,":[26],"robust,":[27],"rapid,":[28],"open":[30],"source":[31],"detecting-SNP":[32],"all":[35],"researchers.":[36],"Since":[37],"detection":[39],"SNPs":[41,57,87,134,149,180],"needs":[42],"special":[43],"software":[44],"series":[46],"steps":[47],"including":[48],"alignment,":[49],"detection,":[50],"analysis":[51,162],"present,":[53],"limited":[59],"nonprofessional":[61,143],"users.":[62],"CsSNP":[63,136],"(Comparative":[64],"segments":[65,86,148],"SNP,":[66],"http://biodb.sdau.edu.cn/cssnp/":[67],")":[68],"freely":[71],"available":[72],"web":[73],"based":[75],"on":[76],"Blat,":[78],"Blast,":[79],"Perl":[81],"programs":[82],"detect":[84,133,179],"comparative":[85,147],"show":[90],"detail":[92],"information":[93,159],"SNPs.":[95],"The":[96],"results":[97],"are":[98],"filtered":[99],"presented":[101],"in":[102,150,169],"statistics":[104],"figure":[105],"Gbrowse":[108],"map.":[109,172],"This":[110],"platform":[111],"contains":[112],"reference":[114],"genomic":[115],"sequences":[116,119],"coding":[118],"60":[121],"plant":[122],"species,":[123],"also":[125],"provides":[126,174],"new":[127,176],"opportunities":[128],"users":[131,144,157],"easily.":[135],"provided":[138],"convenient":[140],"find":[146],"their":[151],"own":[152],"sequences,":[153],"give":[155],"SNPs,":[164],"display":[166],"these":[167],"data":[168],"dynamic":[171],"It":[173],"method":[177],"may":[182],"accelerate":[183],"related":[184],"studies.":[185]},"counts_by_year":[],"updated_date":"2025-12-23T23:11:35.936235","created_date":"2025-10-10T00:00:00"}
