{"id":"https://openalex.org/W2247448379","doi":"https://doi.org/10.1089/cmb.2015.0129","title":"DSEP: A Tool Implementing Novel Method to Predict Side Effects of Drugs","display_name":"DSEP: A Tool Implementing Novel Method to Predict Side Effects of Drugs","publication_year":2015,"publication_date":"2015-10-20","ids":{"openalex":"https://openalex.org/W2247448379","doi":"https://doi.org/10.1089/cmb.2015.0129","mag":"2247448379","pmid":"https://pubmed.ncbi.nlm.nih.gov/26484391"},"language":"en","primary_location":{"id":"doi:10.1089/cmb.2015.0129","is_oa":false,"landing_page_url":"https://doi.org/10.1089/cmb.2015.0129","pdf_url":null,"source":{"id":"https://openalex.org/S78571599","display_name":"Journal of Computational Biology","issn_l":"1066-5277","issn":["1066-5277","1557-8666"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320443","host_organization_name":"Mary Ann Liebert, Inc.","host_organization_lineage":["https://openalex.org/P4310320443"],"host_organization_lineage_names":["Mary Ann Liebert, Inc."],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5073614173","display_name":"Shu-Yuan Niu","orcid":null},"institutions":[{"id":"https://openalex.org/I66867065","display_name":"East China Normal University","ror":"https://ror.org/02n96ep67","country_code":"CN","type":"education","lineage":["https://openalex.org/I66867065"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shu-Yuan Niu","raw_affiliation_strings":["Shanghai Key Laboratory of Regulatory Biology, Institute of Biomedical Sciences and School of Life Sciences, East China Normal University, Shanghai, China"],"affiliations":[{"raw_affiliation_string":"Shanghai Key Laboratory of Regulatory Biology, Institute of Biomedical Sciences and School of Life Sciences, East China Normal University, Shanghai, China","institution_ids":["https://openalex.org/I66867065"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012529031","display_name":"Mingyuan Xin","orcid":"https://orcid.org/0000-0001-9336-5612"},"institutions":[{"id":"https://openalex.org/I66867065","display_name":"East China Normal University","ror":"https://ror.org/02n96ep67","country_code":"CN","type":"education","lineage":["https://openalex.org/I66867065"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ming-Yuan Xin","raw_affiliation_strings":["Shanghai Key Laboratory of Regulatory Biology, Institute of Biomedical Sciences and School of Life Sciences, East China Normal University, Shanghai, China"],"affiliations":[{"raw_affiliation_string":"Shanghai Key Laboratory of Regulatory Biology, Institute of Biomedical Sciences and School of Life Sciences, East China Normal University, Shanghai, China","institution_ids":["https://openalex.org/I66867065"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086698091","display_name":"Jian Luo","orcid":"https://orcid.org/0000-0003-3583-0154"},"institutions":[{"id":"https://openalex.org/I66867065","display_name":"East China Normal University","ror":"https://ror.org/02n96ep67","country_code":"CN","type":"education","lineage":["https://openalex.org/I66867065"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jian Luo","raw_affiliation_strings":["Shanghai Key Laboratory of Regulatory Biology, Institute of Biomedical Sciences and School of Life Sciences, East China Normal University, Shanghai, China"],"affiliations":[{"raw_affiliation_string":"Shanghai Key Laboratory of Regulatory Biology, Institute of Biomedical Sciences and School of Life Sciences, East China Normal University, Shanghai, China","institution_ids":["https://openalex.org/I66867065"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100709239","display_name":"Mingyao Liu","orcid":"https://orcid.org/0000-0001-7339-5048"},"institutions":[{"id":"https://openalex.org/I66867065","display_name":"East China Normal University","ror":"https://ror.org/02n96ep67","country_code":"CN","type":"education","lineage":["https://openalex.org/I66867065"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Ming-Yao Liu","raw_affiliation_strings":["Shanghai Key Laboratory of Regulatory Biology, Institute of Biomedical Sciences and School of Life Sciences, East China Normal University, Shanghai, China"],"affiliations":[{"raw_affiliation_string":"Shanghai Key Laboratory of Regulatory Biology, Institute of Biomedical Sciences and School of Life Sciences, East China Normal University, Shanghai, China","institution_ids":["https://openalex.org/I66867065"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5062917336","display_name":"Zhenran Jiang","orcid":"https://orcid.org/0000-0002-5275-3632"},"institutions":[{"id":"https://openalex.org/I66867065","display_name":"East China Normal University","ror":"https://ror.org/02n96ep67","country_code":"CN","type":"education","lineage":["https://openalex.org/I66867065"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Zhen-Ran Jiang","raw_affiliation_strings":["Shanghai Key Laboratory of Multidimensional Information Processing, Department of Computer Science and Technology, East China Normal University, Shanghai, China"],"affiliations":[{"raw_affiliation_string":"Shanghai Key Laboratory of Multidimensional Information Processing, Department of Computer Science and Technology, East China Normal University, Shanghai, China","institution_ids":["https://openalex.org/I66867065"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5062917336","https://openalex.org/A5100709239"],"corresponding_institution_ids":["https://openalex.org/I66867065"],"apc_list":null,"apc_paid":null,"fwci":0.701,"has_fulltext":false,"cited_by_count":15,"citation_normalized_percentile":{"value":0.7484513,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"22","issue":"12","first_page":"1108","last_page":"1117"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11943","display_name":"Pharmacovigilance and Adverse Drug Reactions","score":0.9829999804496765,"subfield":{"id":"https://openalex.org/subfields/3005","display_name":"Toxicology"},"field":{"id":"https://openalex.org/fields/30","display_name":"Pharmacology, Toxicology and Pharmaceutics"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10375","display_name":"Pharmacogenetics and Drug Metabolism","score":0.9804999828338623,"subfield":{"id":"https://openalex.org/subfields/3004","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/30","display_name":"Pharmacology, Toxicology and Pharmaceutics"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/authorization","display_name":"Authorization","score":0.5457605123519897},{"id":"https://openalex.org/keywords/side-effect","display_name":"Side effect (computer science)","score":0.5089788436889648},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.5041218996047974},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.4549616575241089},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.43457871675491333},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.4215274155139923},{"id":"https://openalex.org/keywords/risk-analysis","display_name":"Risk analysis (engineering)","score":0.3548475503921509},{"id":"https://openalex.org/keywords/computer-security","display_name":"Computer security","score":0.0833958089351654}],"concepts":[{"id":"https://openalex.org/C108759981","wikidata":"https://www.wikidata.org/wiki/Q788590","display_name":"Authorization","level":2,"score":0.5457605123519897},{"id":"https://openalex.org/C3454156","wikidata":"https://www.wikidata.org/wiki/Q1144241","display_name":"Side effect (computer science)","level":2,"score":0.5089788436889648},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.5041218996047974},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.4549616575241089},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.43457871675491333},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.4215274155139923},{"id":"https://openalex.org/C112930515","wikidata":"https://www.wikidata.org/wiki/Q4389547","display_name":"Risk analysis (engineering)","level":1,"score":0.3548475503921509},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0833958089351654},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064420","descriptor_name":"Drug-Related Side Effects and Adverse Reactions","qualifier_ui":"Q000517","qualifier_name":"prevention & control","is_major_topic":false},{"descriptor_ui":"D064420","descriptor_name":"Drug-Related Side Effects and Adverse Reactions","qualifier_ui":"Q000517","qualifier_name":"prevention & control","is_major_topic":false},{"descriptor_ui":"D064420","descriptor_name":"Drug-Related Side Effects and Adverse Reactions","qualifier_ui":"Q000517","qualifier_name":"prevention & control","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1089/cmb.2015.0129","is_oa":false,"landing_page_url":"https://doi.org/10.1089/cmb.2015.0129","pdf_url":null,"source":{"id":"https://openalex.org/S78571599","display_name":"Journal of Computational Biology","issn_l":"1066-5277","issn":["1066-5277","1557-8666"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320443","host_organization_name":"Mary Ann Liebert, Inc.","host_organization_lineage":["https://openalex.org/P4310320443"],"host_organization_lineage_names":["Mary Ann Liebert, Inc."],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computational Biology","raw_type":"journal-article"},{"id":"pmid:26484391","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26484391","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of computational biology : a journal of computational molecular cell biology","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.6700000166893005,"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":22,"referenced_works":["https://openalex.org/W1899611852","https://openalex.org/W1979845492","https://openalex.org/W1995553570","https://openalex.org/W1997453506","https://openalex.org/W2008212177","https://openalex.org/W2031133736","https://openalex.org/W2038382554","https://openalex.org/W2040135138","https://openalex.org/W2047708582","https://openalex.org/W2048435239","https://openalex.org/W2049946556","https://openalex.org/W2070789802","https://openalex.org/W2099466948","https://openalex.org/W2108987487","https://openalex.org/W2120009105","https://openalex.org/W2142572836","https://openalex.org/W2148679377","https://openalex.org/W2152454589","https://openalex.org/W2918064359","https://openalex.org/W4237719897","https://openalex.org/W4242183438","https://openalex.org/W4301937606"],"related_works":["https://openalex.org/W4235015634","https://openalex.org/W2411788938","https://openalex.org/W2117923609","https://openalex.org/W4234860444","https://openalex.org/W4206379684","https://openalex.org/W4253622004","https://openalex.org/W1525729407","https://openalex.org/W50210207","https://openalex.org/W2724882332","https://openalex.org/W318910614"],"abstract_inverted_index":{"Drug":[0],"side":[1,16,63,120],"effects,":[2],"or":[3,126],"adverse":[4],"drug":[5,125],"reactions,":[6],"have":[7,72],"become":[8],"a":[9,52,89,114,123],"focus":[10],"of":[11,65,86],"public":[12],"health":[13,31],"concern.":[14],"Anticipating":[15],"effects":[17,64,121],"before":[18],"the":[19],"drugs":[20,66],"are":[21,68],"granted":[22],"marketing":[23],"authorization":[24],"for":[25,36,122],"clinical":[26],"use":[27,129],"can":[28,97],"help":[29],"reduce":[30],"threats.":[32],"An":[33],"increasing":[34],"need":[35],"methods":[37],"and":[38,71,101,110,137],"tools":[39],"that":[40,54,67],"facilitate":[41],"side-effect":[42,135],"prediction":[43,136],"still":[44],"remains.":[45],"Here,":[46],"we":[47],"present":[48],"DSEP,":[49],"which":[50,87],"is":[51,55,88],"tool":[53,116],"able":[56],"to":[57,61,117,131],"analyze":[58],"chemistry":[59],"files":[60],"predict":[62,118],"under":[69],"development":[70],"not":[73],"been":[74],"included":[75],"into":[76],"any":[77],"database.":[78],"Meanwhile,":[79],"DSEP":[80,113,130],"provides":[81],"three":[82],"computational":[83],"methods,":[84],"one":[85],"novel":[90],"method":[91,96,111],"proposed":[92],"by":[93],"us.":[94],"The":[95,107],"obtain":[98],"higher":[99],"AUC(0.8927)":[100],"AUPR(0.4143)":[102],"scores":[103],"than":[104],"previous":[105],"work.":[106],"advantage":[108],"characteristic":[109],"made":[112],"useful":[115],"potential":[119],"given":[124],"compound.":[127],"We":[128],"conduct":[132],"uncharacterized":[133],"drugs'":[134],"confirm":[138],"interesting":[139],"results.":[140]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":2},{"year":2020,"cited_by_count":1},{"year":2018,"cited_by_count":2}],"updated_date":"2025-12-23T23:11:35.936235","created_date":"2025-10-10T00:00:00"}
