{"id":"https://openalex.org/W1490253884","doi":"https://doi.org/10.1089/153623103322006670","title":"The Role of Declarative Querying in Bioinformatics","display_name":"The Role of Declarative Querying in Bioinformatics","publication_year":2003,"publication_date":"2003-01-01","ids":{"openalex":"https://openalex.org/W1490253884","doi":"https://doi.org/10.1089/153623103322006670","mag":"1490253884","pmid":"https://pubmed.ncbi.nlm.nih.gov/12831563"},"language":"en","primary_location":{"id":"doi:10.1089/153623103322006670","is_oa":false,"landing_page_url":"https://doi.org/10.1089/153623103322006670","pdf_url":null,"source":{"id":"https://openalex.org/S116972989","display_name":"OMICS A Journal of Integrative Biology","issn_l":"1536-2310","issn":["1536-2310","1557-8100"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320443","host_organization_name":"Mary Ann Liebert, Inc.","host_organization_lineage":["https://openalex.org/P4310320443"],"host_organization_lineage_names":["Mary Ann Liebert, Inc."],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"OMICS: A Journal of Integrative Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"http://deepblue.lib.umich.edu/bitstream/2027.42/63375/1/153623103322006670.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5069237428","display_name":"Jignesh M. Patel","orcid":"https://orcid.org/0000-0003-3653-2538"},"institutions":[{"id":"https://openalex.org/I27837315","display_name":"University of Michigan\u2013Ann Arbor","ror":"https://ror.org/00jmfr291","country_code":"US","type":"education","lineage":["https://openalex.org/I27837315"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Jignesh M. Patel","raw_affiliation_strings":["Department of Electrical Engineering and Computer Science, University of Michigan, Ann Arbor, Michigan","Department of Electrical Engineering and Computer Science, University of Michigan Ann Arbor, Michigan, 48109-2122, USA"],"affiliations":[{"raw_affiliation_string":"Department of Electrical Engineering and Computer Science, University of Michigan, Ann Arbor, Michigan","institution_ids":["https://openalex.org/I27837315"]},{"raw_affiliation_string":"Department of Electrical Engineering and Computer Science, University of Michigan Ann Arbor, Michigan, 48109-2122, USA","institution_ids":["https://openalex.org/I27837315"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5069237428"],"corresponding_institution_ids":["https://openalex.org/I27837315"],"apc_list":null,"apc_paid":null,"fwci":1.8728,"has_fulltext":true,"cited_by_count":17,"citation_normalized_percentile":{"value":0.86876652,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"7","issue":"1","first_page":"89","last_page":"91"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.989300012588501,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7011342644691467},{"id":"https://openalex.org/keywords/biological-database","display_name":"Biological database","score":0.6550039649009705},{"id":"https://openalex.org/keywords/very-large-database","display_name":"Very large database","score":0.6494954824447632},{"id":"https://openalex.org/keywords/biological-data","display_name":"Biological data","score":0.4727795124053955},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.4495559334754944},{"id":"https://openalex.org/keywords/analytics","display_name":"Analytics","score":0.44287508726119995},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.34408822655677795},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.32556161284446716},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.2895021438598633},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.15953171253204346},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.10448095202445984}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7011342644691467},{"id":"https://openalex.org/C20901353","wikidata":"https://www.wikidata.org/wiki/Q4117139","display_name":"Biological database","level":2,"score":0.6550039649009705},{"id":"https://openalex.org/C23549232","wikidata":"https://www.wikidata.org/wiki/Q3556311","display_name":"Very large database","level":2,"score":0.6494954824447632},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.4727795124053955},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.4495559334754944},{"id":"https://openalex.org/C79158427","wikidata":"https://www.wikidata.org/wiki/Q485396","display_name":"Analytics","level":2,"score":0.44287508726119995},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.34408822655677795},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.32556161284446716},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.2895021438598633},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.15953171253204346},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.10448095202445984},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001690","descriptor_name":"Biological Science Disciplines","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001690","descriptor_name":"Biological Science Disciplines","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001690","descriptor_name":"Biological Science Disciplines","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1089/153623103322006670","is_oa":false,"landing_page_url":"https://doi.org/10.1089/153623103322006670","pdf_url":null,"source":{"id":"https://openalex.org/S116972989","display_name":"OMICS A Journal of Integrative Biology","issn_l":"1536-2310","issn":["1536-2310","1557-8100"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320443","host_organization_name":"Mary Ann Liebert, Inc.","host_organization_lineage":["https://openalex.org/P4310320443"],"host_organization_lineage_names":["Mary Ann Liebert, Inc."],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"OMICS: A Journal of Integrative Biology","raw_type":"journal-article"},{"id":"pmid:12831563","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/12831563","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Omics : a journal of integrative biology","raw_type":null},{"id":"pmh:oai:deepblue.lib.umich.edu:2027.42/63375","is_oa":true,"landing_page_url":"http://www.ncbi.nlm.nih.gov/sites/entrez?cmd=retrieve&db=pubmed&list_uids=12831563&dopt=citation","pdf_url":"http://deepblue.lib.umich.edu/bitstream/2027.42/63375/1/153623103322006670.pdf","source":{"id":"https://openalex.org/S4306400393","display_name":"Deep Blue (University of Michigan)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I27837315","host_organization_name":"University of Michigan","host_organization_lineage":["https://openalex.org/I27837315"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.85.5888","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.85.5888","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.eecs.umich.edu/~jag/wdmbio/patel.pdf","raw_type":"text"}],"best_oa_location":{"id":"pmh:oai:deepblue.lib.umich.edu:2027.42/63375","is_oa":true,"landing_page_url":"http://www.ncbi.nlm.nih.gov/sites/entrez?cmd=retrieve&db=pubmed&list_uids=12831563&dopt=citation","pdf_url":"http://deepblue.lib.umich.edu/bitstream/2027.42/63375/1/153623103322006670.pdf","source":{"id":"https://openalex.org/S4306400393","display_name":"Deep Blue (University of Michigan)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I27837315","host_organization_name":"University of Michigan","host_organization_lineage":["https://openalex.org/I27837315"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Article"},"sustainable_development_goals":[{"score":0.47999998927116394,"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land"}],"awards":[{"id":"https://openalex.org/G7961657650","display_name":"CAREER: Quickstep:  An Architecture-Conscious Main Memory DBMS","funder_award_id":"0093059","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320307758","display_name":"Eli Lilly and Company","ror":"https://ror.org/01qat3289"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1490253884.pdf","grobid_xml":"https://content.openalex.org/works/W1490253884.grobid-xml"},"referenced_works_count":13,"referenced_works":["https://openalex.org/W1772241369","https://openalex.org/W1971646616","https://openalex.org/W2021639324","https://openalex.org/W2057507520","https://openalex.org/W2093992569","https://openalex.org/W2124070418","https://openalex.org/W2127230663","https://openalex.org/W2136145671","https://openalex.org/W2144882221","https://openalex.org/W2161922248","https://openalex.org/W2185907055","https://openalex.org/W2321314516","https://openalex.org/W2988119170"],"related_works":["https://openalex.org/W4381571608","https://openalex.org/W2936116675","https://openalex.org/W2291027050","https://openalex.org/W2307569040","https://openalex.org/W1018570427","https://openalex.org/W1483126190","https://openalex.org/W2074162075","https://openalex.org/W4242570880","https://openalex.org/W2867972286","https://openalex.org/W2323949201"],"abstract_inverted_index":{"The":[0,83],"recent":[1],"publication":[2],"of":[3,6,21,55,76,85,104,132,138,209],"a":[4,81,130],"draft":[5],"the":[7,42,53,72,93,96,184,207],"entire":[8],"human":[9,44],"genome":[10,45],"[7,":[11],"13]":[12],"has":[13],"served":[14],"to":[15,79,92,111,191,196],"fuel":[16],"an":[17],"already":[18],"explosive":[19],"area":[20],"research":[22,88,94],"in":[23,28,48,66,95,99,129,169,213],"bioinformatics":[24],"that":[25,100,140],"is":[26,89],"involved":[27],"deriving":[29],"meaningful":[30],"knowledge":[31],"from":[32],"proteins":[33,65],"and":[34,60,70,74,113,166,182,194,216],"DNA":[35],"sequences":[36],"[1,":[37],"4,":[38],"9-12].":[39],"Even":[40],"with":[41],"full":[43],"sequence":[46,151],"now":[47],"hand,":[49],"scientists":[50],"still":[51],"face":[52],"challenges":[54],"determining":[56],"exact":[57],"gene":[58],"locations":[59],"functions,":[61],"observing":[62],"interactions":[63],"between":[64,206],"complex":[67],"molecular":[68],"machines,":[69],"learning":[71],"structure":[73],"function":[75],"proteins,":[77],"just":[78],"name":[80],"few.":[82],"progress":[84],"this":[86],"scientific":[87],"closely":[90],"connected":[91],"database":[97],"community":[98],"analyzing":[101],"large":[102,115,146],"volumes":[103],"biological":[105],"data":[106,160,164,210],"sets":[107],"involves":[108],"being":[109],"able":[110],"maintain":[112],"query":[114],"databases":[116,148],"[3,":[117],"8].":[118],"Database":[119],"management":[120,211],"systems":[121],"(DBMSs)":[122],"could":[123],"help":[124],"support":[125],"life":[126,179,185,214],"sciences":[127,180,186],"applications,":[128,181],"number":[131],"different":[133],"ways.":[134],"A":[135],"partial":[136],"list":[137],"tasks":[139],"such":[141],"applications":[142],"require":[143],"is:":[144],"querying":[145,153,162],"structured":[147],"(such":[149,155],"as":[150,156],"databases),":[152],"semi-structured":[154],"published":[157],"manuscripts),":[158],"managing":[159,167],"replication,":[161],"distributed":[163],"sources,":[165],"parallelism":[168],"high-throughput":[170],"bioinformatics.":[171],"Unfortunately,":[172],"current":[173],"DBMSs":[174],"have":[175,188],"largely":[176],"ignored":[177],"supporting":[178],"consequently,":[183],"researches":[187],"been":[189],"forced":[190],"write":[192],"tools":[193,212],"scripts":[195],"perform":[197],"these":[198],"tasks.":[199],"An":[200],"interesting":[201],"parallel":[202],"can":[203],"be":[204],"drawn":[205],"state":[208],"sciences,":[215]},"counts_by_year":[{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}