{"id":"https://openalex.org/W2086065098","doi":"https://doi.org/10.1089/153623103322006616","title":"Metric-Space Indexes as a Basis for Scalable Biological Databases","display_name":"Metric-Space Indexes as a Basis for Scalable Biological Databases","publication_year":2003,"publication_date":"2003-01-01","ids":{"openalex":"https://openalex.org/W2086065098","doi":"https://doi.org/10.1089/153623103322006616","mag":"2086065098","pmid":"https://pubmed.ncbi.nlm.nih.gov/12838940"},"language":"en","primary_location":{"id":"doi:10.1089/153623103322006616","is_oa":false,"landing_page_url":"https://doi.org/10.1089/153623103322006616","pdf_url":null,"source":{"id":"https://openalex.org/S116972989","display_name":"OMICS A Journal of Integrative Biology","issn_l":"1536-2310","issn":["1536-2310","1557-8100"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320443","host_organization_name":"Mary Ann Liebert, Inc.","host_organization_lineage":["https://openalex.org/P4310320443"],"host_organization_lineage_names":["Mary Ann Liebert, Inc."],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"OMICS: A Journal of Integrative Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5083499808","display_name":"Daniel P. Miranker","orcid":"https://orcid.org/0009-0003-8838-2890"},"institutions":[{"id":"https://openalex.org/I86519309","display_name":"The University of Texas at Austin","ror":"https://ror.org/00hj54h04","country_code":"US","type":"education","lineage":["https://openalex.org/I86519309"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Daniel P. Miranker","raw_affiliation_strings":["Department of Computer Science, University of Texas, Austin, Texas","Department of Computer Science, University of Texas, Austin, Texas 78712, USA. miranker@cs.utexas.edu"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Texas, Austin, Texas","institution_ids":["https://openalex.org/I86519309"]},{"raw_affiliation_string":"Department of Computer Science, University of Texas, Austin, Texas 78712, USA. miranker@cs.utexas.edu","institution_ids":["https://openalex.org/I86519309"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5083499808"],"corresponding_institution_ids":["https://openalex.org/I86519309"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.17719133,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"7","issue":"1","first_page":"57","last_page":"60"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11106","display_name":"Data Management and Algorithms","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1711","display_name":"Signal Processing"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11106","display_name":"Data Management and Algorithms","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1711","display_name":"Signal Processing"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10317","display_name":"Advanced Database Systems and Queries","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.995199978351593,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.769569993019104},{"id":"https://openalex.org/keywords/search-engine-indexing","display_name":"Search engine indexing","score":0.6947920918464661},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.6202344298362732},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.6134129762649536},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.574855625629425},{"id":"https://openalex.org/keywords/metric","display_name":"Metric (unit)","score":0.538857638835907},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5345332622528076},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5074734091758728},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.49706366658210754},{"id":"https://openalex.org/keywords/space","display_name":"Space (punctuation)","score":0.4668130874633789},{"id":"https://openalex.org/keywords/semantics","display_name":"Semantics (computer science)","score":0.4461376667022705},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.44306427240371704},{"id":"https://openalex.org/keywords/metric-space","display_name":"Metric space","score":0.4237286150455475},{"id":"https://openalex.org/keywords/biological-database","display_name":"Biological database","score":0.42083412408828735},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.12517955899238586},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.12154677510261536},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.09257367253303528}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.769569993019104},{"id":"https://openalex.org/C75165309","wikidata":"https://www.wikidata.org/wiki/Q2258979","display_name":"Search engine indexing","level":2,"score":0.6947920918464661},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.6202344298362732},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.6134129762649536},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.574855625629425},{"id":"https://openalex.org/C176217482","wikidata":"https://www.wikidata.org/wiki/Q860554","display_name":"Metric (unit)","level":2,"score":0.538857638835907},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5345332622528076},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5074734091758728},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.49706366658210754},{"id":"https://openalex.org/C2778572836","wikidata":"https://www.wikidata.org/wiki/Q380933","display_name":"Space (punctuation)","level":2,"score":0.4668130874633789},{"id":"https://openalex.org/C184337299","wikidata":"https://www.wikidata.org/wiki/Q1437428","display_name":"Semantics (computer science)","level":2,"score":0.4461376667022705},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.44306427240371704},{"id":"https://openalex.org/C198043062","wikidata":"https://www.wikidata.org/wiki/Q180953","display_name":"Metric space","level":2,"score":0.4237286150455475},{"id":"https://openalex.org/C20901353","wikidata":"https://www.wikidata.org/wiki/Q4117139","display_name":"Biological database","level":2,"score":0.42083412408828735},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.12517955899238586},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.12154677510261536},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.09257367253303528},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0},{"id":"https://openalex.org/C21547014","wikidata":"https://www.wikidata.org/wiki/Q1423657","display_name":"Operations management","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1089/153623103322006616","is_oa":false,"landing_page_url":"https://doi.org/10.1089/153623103322006616","pdf_url":null,"source":{"id":"https://openalex.org/S116972989","display_name":"OMICS A Journal of Integrative Biology","issn_l":"1536-2310","issn":["1536-2310","1557-8100"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320443","host_organization_name":"Mary Ann Liebert, Inc.","host_organization_lineage":["https://openalex.org/P4310320443"],"host_organization_lineage_names":["Mary Ann Liebert, Inc."],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"OMICS: A Journal of Integrative Biology","raw_type":"journal-article"},{"id":"pmid:12838940","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/12838940","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Omics : a journal of integrative biology","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/8","display_name":"Decent work and economic growth","score":0.550000011920929}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":7,"referenced_works":["https://openalex.org/W1554174647","https://openalex.org/W1985560593","https://openalex.org/W2038044292","https://openalex.org/W2106642566","https://openalex.org/W2128786211","https://openalex.org/W2143642163","https://openalex.org/W2146258444"],"related_works":["https://openalex.org/W3024364549","https://openalex.org/W4206019083","https://openalex.org/W1976265003","https://openalex.org/W2054476758","https://openalex.org/W2370378377","https://openalex.org/W2048865712","https://openalex.org/W4210535024","https://openalex.org/W4237510188","https://openalex.org/W2130160813","https://openalex.org/W4297851895"],"abstract_inverted_index":{"Biochemical":[0],"databases":[1],"will":[2,127],"be":[3,47,105],"best":[4],"served":[5],"by":[6],"the":[7,25,95,102],"development":[8,26],"of":[9,38,68,97],"new":[10],"specialized":[11],"database":[12,28],"management":[13,112],"systems":[14,54,113],"whose":[15],"storage":[16],"managers":[17],"are":[18],"based":[19],"on":[20,55],"metric-space":[21],"indexing":[22,59,86],"techniques":[23],"and":[24,40,77,124,132,142],"a":[27,88,108,122],"query":[29,119],"languages":[30,120],"that":[31,71,114,137],"embody":[32],"semantics":[33],"derived":[34],"from":[35,65],"biochemical":[36,43,72],"models":[37],"similarity":[39,98],"evolution.":[41],"Important":[42],"data":[44,73,89,103],"types":[45],"cannot":[46,104],"effectively":[48],"mapped":[49,106],"to":[50,83,93,107,130],"low":[51],"dimensional":[52],"coordinate":[53,109],"which":[56],"O(log":[57],"n)":[58],"methods":[60],"rely.":[61],"It":[62],"is":[63,74],"clear":[64],"an":[66],"abundance":[67],"bioinformatic":[69],"discoveries":[70],"not":[75],"random":[76],"exhibits":[78],"interesting":[79],"structure":[80],"with":[81,121],"respect":[82],"clustering.":[84],"Metric-space":[85],"exploits":[87],"set's":[90],"intrinsic":[91],"clustering":[92],"speed":[94],"execution":[96],"queries,":[99],"even":[100],"when":[101],"system.":[110],"Database":[111],"seamlessly":[115],"integrate":[116],"semantically":[117],"rich":[118],"metric-storage":[123],"retrieval":[125],"mechanism":[126],"allow":[128],"biologists":[129],"simply":[131],"concisely":[133],"develop":[134],"informatic":[135],"studies":[136],"have":[138],"traditionally":[139],"been":[140],"large":[141],"labor":[143],"intensive.":[144]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2014,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
