{"id":"https://openalex.org/W1966521833","doi":"https://doi.org/10.1089/106652701446152","title":"Structure Comparison and Structure Patterns","display_name":"Structure Comparison and Structure Patterns","publication_year":2000,"publication_date":"2000-10-01","ids":{"openalex":"https://openalex.org/W1966521833","doi":"https://doi.org/10.1089/106652701446152","mag":"1966521833","pmid":"https://pubmed.ncbi.nlm.nih.gov/11153094"},"language":"en","primary_location":{"id":"doi:10.1089/106652701446152","is_oa":false,"landing_page_url":"https://doi.org/10.1089/106652701446152","pdf_url":null,"source":{"id":"https://openalex.org/S78571599","display_name":"Journal of Computational Biology","issn_l":"1066-5277","issn":["1066-5277","1557-8666"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320443","host_organization_name":"Mary Ann Liebert, Inc.","host_organization_lineage":["https://openalex.org/P4310320443"],"host_organization_lineage_names":["Mary Ann Liebert, Inc."],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5038734200","display_name":"Ingvar Eidhammer","orcid":null},"institutions":[{"id":"https://openalex.org/I4432739","display_name":"University of Bergen","ror":"https://ror.org/03zga2b32","country_code":"NO","type":"education","lineage":["https://openalex.org/I4432739"]}],"countries":["NO"],"is_corresponding":true,"raw_author_name":"Ingvar Eidhammer","raw_affiliation_strings":["Department of Informatics, University of Bergen, H\u00f8yteknologisentret, N-5020 Bergen, Norway"],"affiliations":[{"raw_affiliation_string":"Department of Informatics, University of Bergen, H\u00f8yteknologisentret, N-5020 Bergen, Norway","institution_ids":["https://openalex.org/I4432739"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012964587","display_name":"Inge Jonassen","orcid":"https://orcid.org/0000-0003-4110-0748"},"institutions":[{"id":"https://openalex.org/I4432739","display_name":"University of Bergen","ror":"https://ror.org/03zga2b32","country_code":"NO","type":"education","lineage":["https://openalex.org/I4432739"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Inge Jonassen","raw_affiliation_strings":["Department of Informatics, University of Bergen, H\u00f8yteknologisentret, N-5020 Bergen, Norway"],"affiliations":[{"raw_affiliation_string":"Department of Informatics, University of Bergen, H\u00f8yteknologisentret, N-5020 Bergen, Norway","institution_ids":["https://openalex.org/I4432739"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101545021","display_name":"William R. Taylor","orcid":"https://orcid.org/0000-0003-1052-293X"},"institutions":[{"id":"https://openalex.org/I4432739","display_name":"University of Bergen","ror":"https://ror.org/03zga2b32","country_code":"NO","type":"education","lineage":["https://openalex.org/I4432739"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"William R. Taylor","raw_affiliation_strings":["Department of Informatics, University of Bergen, H\u00f8yteknologisentret, N-5020 Bergen, Norway and Division of Mathematical Biology, National Institute for Medical Research, The Ridgeway, Mill Hill, London NW7 1A, U.K"],"affiliations":[{"raw_affiliation_string":"Department of Informatics, University of Bergen, H\u00f8yteknologisentret, N-5020 Bergen, Norway and Division of Mathematical Biology, National Institute for Medical Research, The Ridgeway, Mill Hill, London NW7 1A, U.K","institution_ids":["https://openalex.org/I4432739"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5038734200"],"corresponding_institution_ids":["https://openalex.org/I4432739"],"apc_list":null,"apc_paid":null,"fwci":26.7922,"has_fulltext":false,"cited_by_count":212,"citation_normalized_percentile":{"value":0.99383471,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"7","issue":"5","first_page":"685","last_page":"716"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10538","display_name":"Data Mining Algorithms and Applications","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10538","display_name":"Data Mining Algorithms and Applications","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11063","display_name":"Rough Sets and Fuzzy Logic","score":0.991100013256073,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10317","display_name":"Advanced Database Systems and Queries","score":0.9871000051498413,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pairwise-comparison","display_name":"Pairwise comparison","score":0.7766055464744568},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6227730512619019},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5746141672134399},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.5736938118934631},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4371938109397888},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4226754307746887}],"concepts":[{"id":"https://openalex.org/C184898388","wikidata":"https://www.wikidata.org/wiki/Q1435712","display_name":"Pairwise comparison","level":2,"score":0.7766055464744568},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6227730512619019},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5746141672134399},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.5736938118934631},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4371938109397888},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4226754307746887},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D015394","descriptor_name":"Molecular Structure","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015394","descriptor_name":"Molecular Structure","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015394","descriptor_name":"Molecular Structure","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1089/106652701446152","is_oa":false,"landing_page_url":"https://doi.org/10.1089/106652701446152","pdf_url":null,"source":{"id":"https://openalex.org/S78571599","display_name":"Journal of Computational Biology","issn_l":"1066-5277","issn":["1066-5277","1557-8666"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320443","host_organization_name":"Mary Ann Liebert, Inc.","host_organization_lineage":["https://openalex.org/P4310320443"],"host_organization_lineage_names":["Mary Ann Liebert, Inc."],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computational Biology","raw_type":"journal-article"},{"id":"pmid:11153094","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/11153094","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of computational biology : a journal of computational molecular cell biology","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.34.5869","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.34.5869","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.ii.uib.no/publikasjoner/texrap/ps/1999-174.ps","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.84.7824","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.84.7824","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.stat.duke.edu/courses/Fall05/sta395/abel1.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":108,"referenced_works":["https://openalex.org/W25081486","https://openalex.org/W42190837","https://openalex.org/W93575037","https://openalex.org/W196131166","https://openalex.org/W1501400124","https://openalex.org/W1513073936","https://openalex.org/W1546433743","https://openalex.org/W1590165017","https://openalex.org/W1592845636","https://openalex.org/W1744821831","https://openalex.org/W1901470441","https://openalex.org/W1905708630","https://openalex.org/W1965907701","https://openalex.org/W1965910641","https://openalex.org/W1966041739","https://openalex.org/W1966679395","https://openalex.org/W1968002069","https://openalex.org/W1969051510","https://openalex.org/W1972148314","https://openalex.org/W1975453400","https://openalex.org/W1979147581","https://openalex.org/W1990554768","https://openalex.org/W1991252389","https://openalex.org/W1991768096","https://openalex.org/W1992115216","https://openalex.org/W1993273781","https://openalex.org/W1999569420","https://openalex.org/W2000468790","https://openalex.org/W2005049999","https://openalex.org/W2009296806","https://openalex.org/W2009566340","https://openalex.org/W2012544092","https://openalex.org/W2012744602","https://openalex.org/W2014160633","https://openalex.org/W2022058405","https://openalex.org/W2023790301","https://openalex.org/W2024519892","https://openalex.org/W2025967846","https://openalex.org/W2026046929","https://openalex.org/W2028034301","https://openalex.org/W2029195137","https://openalex.org/W2032991899","https://openalex.org/W2041318800","https://openalex.org/W2041966417","https://openalex.org/W2045119694","https://openalex.org/W2047630272","https://openalex.org/W2048792959","https://openalex.org/W2049125285","https://openalex.org/W2050330741","https://openalex.org/W2051895548","https://openalex.org/W2053281575","https://openalex.org/W2053599146","https://openalex.org/W2053803268","https://openalex.org/W2055043387","https://openalex.org/W2056619794","https://openalex.org/W2056807348","https://openalex.org/W2057368087","https://openalex.org/W2058844903","https://openalex.org/W2058987156","https://openalex.org/W2060999146","https://openalex.org/W2063933739","https://openalex.org/W2064074838","https://openalex.org/W2066805041","https://openalex.org/W2067129729","https://openalex.org/W2069090108","https://openalex.org/W2070189216","https://openalex.org/W2071427873","https://openalex.org/W2071818582","https://openalex.org/W2072375395","https://openalex.org/W2074231493","https://openalex.org/W2077813307","https://openalex.org/W2084335551","https://openalex.org/W2084367350","https://openalex.org/W2085277871","https://openalex.org/W2089173286","https://openalex.org/W2089683277","https://openalex.org/W2090356576","https://openalex.org/W2095855913","https://openalex.org/W2097471670","https://openalex.org/W2102431330","https://openalex.org/W2104612618","https://openalex.org/W2108138353","https://openalex.org/W2108797863","https://openalex.org/W2115121494","https://openalex.org/W2116007667","https://openalex.org/W2117164735","https://openalex.org/W2123150109","https://openalex.org/W2128613007","https://openalex.org/W2131195071","https://openalex.org/W2132094529","https://openalex.org/W2133715954","https://openalex.org/W2133956643","https://openalex.org/W2136567909","https://openalex.org/W2137345862","https://openalex.org/W2141414410","https://openalex.org/W2143210482","https://openalex.org/W2144453646","https://openalex.org/W2155367844","https://openalex.org/W2157975034","https://openalex.org/W2161938295","https://openalex.org/W2171962405","https://openalex.org/W2601913882","https://openalex.org/W2602756222","https://openalex.org/W2611102240","https://openalex.org/W2911484678","https://openalex.org/W4232621124","https://openalex.org/W4239426826","https://openalex.org/W4256395558"],"related_works":["https://openalex.org/W2487162673","https://openalex.org/W2942366970","https://openalex.org/W2793211469","https://openalex.org/W2949152769","https://openalex.org/W4372354731","https://openalex.org/W2562400057","https://openalex.org/W1692008701","https://openalex.org/W2597588799","https://openalex.org/W4360593462","https://openalex.org/W2194570607"],"abstract_inverted_index":{"This":[0],"article":[1],"investigates":[2],"aspects":[3],"of":[4,13,21,26,54],"pairwise":[5],"and":[6,10,24,28,36,40,44,52,58],"multiple":[7],"structure":[8],"comparison,":[9],"the":[11],"problem":[12],"automatically":[14],"discover":[15],"common":[16],"patterns":[17,29],"in":[18],"a":[19],"set":[20],"structures.":[22],"Descriptions":[23],"representation":[25],"structures":[27],"are":[30,56],"described,":[31],"as":[32,34],"well":[33],"scoring":[35],"algorithms":[37],"for":[38,48],"comparison":[39],"discovery.":[41],"A":[42],"framework":[43],"nomenclature":[45],"is":[46],"developed":[47],"classifying":[49],"different":[50],"methods,":[51],"many":[53],"these":[55],"reviewed":[57],"placed":[59],"into":[60],"this":[61],"framework.":[62]},"counts_by_year":[{"year":2025,"cited_by_count":7},{"year":2024,"cited_by_count":2},{"year":2022,"cited_by_count":3},{"year":2020,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":9},{"year":2013,"cited_by_count":10},{"year":2012,"cited_by_count":6}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
