{"id":"https://openalex.org/W2055666215","doi":"https://doi.org/10.1089/10665270050081478","title":"A Greedy Algorithm for Aligning DNA Sequences","display_name":"A Greedy Algorithm for Aligning DNA Sequences","publication_year":2000,"publication_date":"2000-02-01","ids":{"openalex":"https://openalex.org/W2055666215","doi":"https://doi.org/10.1089/10665270050081478","mag":"2055666215","pmid":"https://pubmed.ncbi.nlm.nih.gov/10890397"},"language":"en","primary_location":{"id":"doi:10.1089/10665270050081478","is_oa":false,"landing_page_url":"https://doi.org/10.1089/10665270050081478","pdf_url":null,"source":{"id":"https://openalex.org/S78571599","display_name":"Journal of Computational Biology","issn_l":"1066-5277","issn":["1066-5277","1557-8666"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320443","host_organization_name":"Mary Ann Liebert, Inc.","host_organization_lineage":["https://openalex.org/P4310320443"],"host_organization_lineage_names":["Mary Ann Liebert, Inc."],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100459168","display_name":"Zheng Zhang","orcid":"https://orcid.org/0000-0003-1470-6998"},"institutions":[{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Zheng Zhang","raw_affiliation_strings":["Department of Computer Science and Engineering, The Pennsylvania State University, University Park, PA 16802","Department of Computer Science and Engineering, The Pennsylvania State University, University Park 16802, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, The Pennsylvania State University, University Park, PA 16802","institution_ids":["https://openalex.org/I130769515"]},{"raw_affiliation_string":"Department of Computer Science and Engineering, The Pennsylvania State University, University Park 16802, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014765182","display_name":"Scott Schwartz","orcid":null},"institutions":[{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Scott Schwartz","raw_affiliation_strings":["Department of Computer Science and Engineering, The Pennsylvania State University, University Park, PA 16802"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, The Pennsylvania State University, University Park, PA 16802","institution_ids":["https://openalex.org/I130769515"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108099065","display_name":"Lukas Wagner","orcid":null},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lukas Wagner","raw_affiliation_strings":["National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894"],"affiliations":[{"raw_affiliation_string":"National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894","institution_ids":["https://openalex.org/I4210109390","https://openalex.org/I1299303238"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5071092709","display_name":"Webb Miller","orcid":null},"institutions":[{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Webb Miller","raw_affiliation_strings":["Department of Computer Science and Engineering, The Pennsylvania State University, University Park, PA 16802"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, The Pennsylvania State University, University Park, PA 16802","institution_ids":["https://openalex.org/I130769515"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5100459168"],"corresponding_institution_ids":["https://openalex.org/I130769515"],"apc_list":null,"apc_paid":null,"fwci":9.0749,"has_fulltext":false,"cited_by_count":5601,"citation_normalized_percentile":{"value":0.98588662,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"7","issue":"1-2","first_page":"203","last_page":"214"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9940000176429749,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/greedy-algorithm","display_name":"Greedy algorithm","score":0.82526695728302},{"id":"https://openalex.org/keywords/dynamic-programming","display_name":"Dynamic programming","score":0.7229636907577515},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6297154426574707},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.5781367421150208},{"id":"https://openalex.org/keywords/unigene","display_name":"UniGene","score":0.4346487522125244},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.17430523037910461},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.11225134134292603},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.07626014947891235}],"concepts":[{"id":"https://openalex.org/C51823790","wikidata":"https://www.wikidata.org/wiki/Q504353","display_name":"Greedy algorithm","level":2,"score":0.82526695728302},{"id":"https://openalex.org/C37404715","wikidata":"https://www.wikidata.org/wiki/Q380679","display_name":"Dynamic programming","level":2,"score":0.7229636907577515},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6297154426574707},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.5781367421150208},{"id":"https://openalex.org/C2780330800","wikidata":"https://www.wikidata.org/wiki/Q7884647","display_name":"UniGene","level":5,"score":0.4346487522125244},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.17430523037910461},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.11225134134292603},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.07626014947891235},{"id":"https://openalex.org/C149034497","wikidata":"https://www.wikidata.org/wiki/Q1384835","display_name":"Expressed sequence tag","level":4,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001699","descriptor_name":"Biometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001699","descriptor_name":"Biometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001699","descriptor_name":"Biometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1089/10665270050081478","is_oa":false,"landing_page_url":"https://doi.org/10.1089/10665270050081478","pdf_url":null,"source":{"id":"https://openalex.org/S78571599","display_name":"Journal of Computational Biology","issn_l":"1066-5277","issn":["1066-5277","1557-8666"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320443","host_organization_name":"Mary Ann Liebert, Inc.","host_organization_lineage":["https://openalex.org/P4310320443"],"host_organization_lineage_names":["Mary Ann Liebert, Inc."],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computational Biology","raw_type":"journal-article"},{"id":"pmid:10890397","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/10890397","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of computational biology : a journal of computational molecular cell biology","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.94.4643","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.94.4643","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://pipmaker.bx.psu.edu/dist/greedy.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":32,"referenced_works":["https://openalex.org/W83755500","https://openalex.org/W1446105829","https://openalex.org/W1978283952","https://openalex.org/W1984775202","https://openalex.org/W1994237456","https://openalex.org/W1995260859","https://openalex.org/W2006597312","https://openalex.org/W2011632873","https://openalex.org/W2019691167","https://openalex.org/W2021487990","https://openalex.org/W2028249034","https://openalex.org/W2031854476","https://openalex.org/W2041902006","https://openalex.org/W2055043387","https://openalex.org/W2061008984","https://openalex.org/W2068448872","https://openalex.org/W2069615132","https://openalex.org/W2071184135","https://openalex.org/W2074774389","https://openalex.org/W2085668020","https://openalex.org/W2096525273","https://openalex.org/W2121016876","https://openalex.org/W2130200371","https://openalex.org/W2137986897","https://openalex.org/W2141923006","https://openalex.org/W2152331922","https://openalex.org/W2158023121","https://openalex.org/W2158714788","https://openalex.org/W2160607291","https://openalex.org/W2611102567","https://openalex.org/W4236236547","https://openalex.org/W4366064364"],"related_works":["https://openalex.org/W2386767533","https://openalex.org/W2953093056","https://openalex.org/W2104055432","https://openalex.org/W2082153276","https://openalex.org/W2014379760","https://openalex.org/W1578673849","https://openalex.org/W2353460016","https://openalex.org/W3106657817","https://openalex.org/W2055666215","https://openalex.org/W1182460399"],"abstract_inverted_index":{"For":[0],"aligning":[1],"DNA":[2],"sequences":[3],"that":[4,34,54,87],"differ":[5],"only":[6],"by":[7,11],"sequencing":[8],"errors,":[9],"or":[10],"equivalent":[12],"errors":[13],"from":[14],"other":[15],"sources,":[16],"a":[17,43,62,85],"greedy":[18,45],"algorithm":[19,47,80],"can":[20],"be":[21,38],"much":[22],"faster":[23,72],"than":[24],"traditional":[25],"dynamic":[26,64],"programming":[27,65],"approaches":[28],"and":[29,52],"yet":[30],"produce":[31],"an":[32],"alignment":[33,46,59],"is":[35,81],"guaranteed":[36],"to":[37],"theoretically":[39],"optimal.":[40],"We":[41],"introduce":[42],"new":[44],"with":[48],"particularly":[49],"good":[50],"performance":[51],"show":[53],"it":[55],"computes":[56],"the":[57,89,93],"same":[58],"as":[60],"does":[61],"certain":[63],"algorithm,":[66],"while":[67],"executing":[68],"over":[69],"10":[70],"times":[71],"on":[73],"appropriate":[74],"data.":[75],"An":[76],"implementation":[77],"of":[78],"this":[79],"currently":[82],"used":[83],"in":[84],"program":[86],"assembles":[88],"UniGene":[90],"database":[91],"at":[92],"National":[94],"Center":[95],"for":[96],"Biotechnology":[97],"Information.":[98]},"counts_by_year":[{"year":2026,"cited_by_count":64},{"year":2025,"cited_by_count":315},{"year":2024,"cited_by_count":391},{"year":2023,"cited_by_count":389},{"year":2022,"cited_by_count":380},{"year":2021,"cited_by_count":495},{"year":2020,"cited_by_count":367},{"year":2019,"cited_by_count":308},{"year":2018,"cited_by_count":295},{"year":2017,"cited_by_count":231},{"year":2016,"cited_by_count":259},{"year":2015,"cited_by_count":241},{"year":2014,"cited_by_count":273},{"year":2013,"cited_by_count":268},{"year":2012,"cited_by_count":264}],"updated_date":"2026-04-14T08:04:32.555800","created_date":"2025-10-10T00:00:00"}
