{"id":"https://openalex.org/W4405954117","doi":"https://doi.org/10.1088/2632-2153/ada47f","title":"Large language models for causal hypothesis generation in science","display_name":"Large language models for causal hypothesis generation in science","publication_year":2024,"publication_date":"2024-12-31","ids":{"openalex":"https://openalex.org/W4405954117","doi":"https://doi.org/10.1088/2632-2153/ada47f"},"language":"en","primary_location":{"id":"doi:10.1088/2632-2153/ada47f","is_oa":true,"landing_page_url":"https://doi.org/10.1088/2632-2153/ada47f","pdf_url":null,"source":{"id":"https://openalex.org/S4210200687","display_name":"Machine Learning Science and Technology","issn_l":"2632-2153","issn":["2632-2153"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320083","host_organization_name":"IOP Publishing","host_organization_lineage":["https://openalex.org/P4310320083","https://openalex.org/P4310311669"],"host_organization_lineage_names":["IOP Publishing","Institute of Physics"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Machine Learning: Science and Technology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1088/2632-2153/ada47f","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5077867358","display_name":"Kai-Hendrik Cohrs","orcid":"https://orcid.org/0000-0002-2286-7487"},"institutions":[{"id":"https://openalex.org/I16097986","display_name":"Universitat de Val\u00e8ncia","ror":"https://ror.org/043nxc105","country_code":"ES","type":"education","lineage":["https://openalex.org/I16097986"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Kai-Hendrik Cohrs","raw_affiliation_strings":["Image Processing Laboratory (IPL), Universitat de Val\u00e8ncia, Val\u00e8ncia, Spain"],"raw_orcid":"https://orcid.org/0000-0002-2286-7487","affiliations":[{"raw_affiliation_string":"Image Processing Laboratory (IPL), Universitat de Val\u00e8ncia, Val\u00e8ncia, Spain","institution_ids":["https://openalex.org/I16097986"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015046986","display_name":"Emiliano D\u00edaz","orcid":"https://orcid.org/0000-0001-8410-6635"},"institutions":[{"id":"https://openalex.org/I16097986","display_name":"Universitat de Val\u00e8ncia","ror":"https://ror.org/043nxc105","country_code":"ES","type":"education","lineage":["https://openalex.org/I16097986"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Emiliano Diaz","raw_affiliation_strings":["Image Processing Laboratory (IPL), Universitat de Val\u00e8ncia, Val\u00e8ncia, Spain"],"raw_orcid":"https://orcid.org/0000-0001-8410-6635","affiliations":[{"raw_affiliation_string":"Image Processing Laboratory (IPL), Universitat de Val\u00e8ncia, Val\u00e8ncia, Spain","institution_ids":["https://openalex.org/I16097986"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008346766","display_name":"Vasileios Sitokonstantinou","orcid":"https://orcid.org/0000-0001-5506-2872"},"institutions":[{"id":"https://openalex.org/I16097986","display_name":"Universitat de Val\u00e8ncia","ror":"https://ror.org/043nxc105","country_code":"ES","type":"education","lineage":["https://openalex.org/I16097986"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Vasileios Sitokonstantinou","raw_affiliation_strings":["Image Processing Laboratory (IPL), Universitat de Val\u00e8ncia, Val\u00e8ncia, Spain"],"raw_orcid":"https://orcid.org/0000-0001-5506-2872","affiliations":[{"raw_affiliation_string":"Image Processing Laboratory (IPL), Universitat de Val\u00e8ncia, Val\u00e8ncia, Spain","institution_ids":["https://openalex.org/I16097986"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032347395","display_name":"Gherardo Varando","orcid":"https://orcid.org/0000-0002-6708-1103"},"institutions":[{"id":"https://openalex.org/I16097986","display_name":"Universitat de Val\u00e8ncia","ror":"https://ror.org/043nxc105","country_code":"ES","type":"education","lineage":["https://openalex.org/I16097986"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Gherardo Varando","raw_affiliation_strings":["Image Processing Laboratory (IPL), Universitat de Val\u00e8ncia, Val\u00e8ncia, Spain"],"raw_orcid":"https://orcid.org/0000-0002-6708-1103","affiliations":[{"raw_affiliation_string":"Image Processing Laboratory (IPL), Universitat de Val\u00e8ncia, Val\u00e8ncia, Spain","institution_ids":["https://openalex.org/I16097986"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5039052506","display_name":"Gustau Camps\u2010Valls","orcid":"https://orcid.org/0000-0003-1683-2138"},"institutions":[{"id":"https://openalex.org/I16097986","display_name":"Universitat de Val\u00e8ncia","ror":"https://ror.org/043nxc105","country_code":"ES","type":"education","lineage":["https://openalex.org/I16097986"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Gustau Camps-Valls","raw_affiliation_strings":["Image Processing Laboratory (IPL), Universitat de Val\u00e8ncia, Val\u00e8ncia, Spain"],"raw_orcid":"https://orcid.org/0000-0003-1683-2138","affiliations":[{"raw_affiliation_string":"Image Processing Laboratory (IPL), Universitat de Val\u00e8ncia, Val\u00e8ncia, Spain","institution_ids":["https://openalex.org/I16097986"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I16097986"],"apc_list":{"value":1600,"currency":"GBP","value_usd":1962},"apc_paid":{"value":1600,"currency":"GBP","value_usd":1962},"fwci":3.8899,"has_fulltext":false,"cited_by_count":14,"citation_normalized_percentile":{"value":0.94428383,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"6","issue":"1","first_page":"013001","last_page":"013001"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9688000082969666,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9688000082969666,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9541000127792358,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13083","display_name":"Advanced Text Analysis Techniques","score":0.9071999788284302,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.44596731662750244},{"id":"https://openalex.org/keywords/linguistics","display_name":"Linguistics","score":0.3922950029373169},{"id":"https://openalex.org/keywords/psychology","display_name":"Psychology","score":0.38572824001312256},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.3251284956932068},{"id":"https://openalex.org/keywords/philosophy","display_name":"Philosophy","score":0.17737820744514465}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.44596731662750244},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.3922950029373169},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.38572824001312256},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.3251284956932068},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.17737820744514465}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1088/2632-2153/ada47f","is_oa":true,"landing_page_url":"https://doi.org/10.1088/2632-2153/ada47f","pdf_url":null,"source":{"id":"https://openalex.org/S4210200687","display_name":"Machine Learning Science and Technology","issn_l":"2632-2153","issn":["2632-2153"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320083","host_organization_name":"IOP Publishing","host_organization_lineage":["https://openalex.org/P4310320083","https://openalex.org/P4310311669"],"host_organization_lineage_names":["IOP Publishing","Institute of Physics"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Machine Learning: Science and Technology","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:6605f3b5eace4ea9802d52c10afa0e72","is_oa":true,"landing_page_url":"https://doaj.org/article/6605f3b5eace4ea9802d52c10afa0e72","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Machine Learning: Science and Technology, Vol 6, Iss 1, p 013001 (2025)","raw_type":"article"},{"id":"pmh:oai:library.wur.nl:wurpubs/0b24bee9-5663-435d-b820-5910fa4314a0","is_oa":true,"landing_page_url":"https://research.wur.nl/en/publications/large-language-models-for-causal-hypothesis-generation-in-science","pdf_url":null,"source":{"id":"https://openalex.org/S4210201231","display_name":"Socio-Environmental Systems Modeling","issn_l":"2663-3027","issn":["2663-3027"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ISSN: 2632-2153","raw_type":"Article/Letter to editor"},{"id":"pmh:oai:roderic.uv.es:10550/123146","is_oa":true,"landing_page_url":"https://hdl.handle.net/10550/123146","pdf_url":null,"source":{"id":"https://openalex.org/S4306400245","display_name":"Repository of Digital Objects for Teaching Research and Culture (University of Valencia)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I16097986","host_organization_name":"Universitat de Val\u00e8ncia","host_organization_lineage":["https://openalex.org/I16097986"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Cohrs, Kai-Hendrik D\u00edaz Salas Porras, Emiliano Sitokonstantinou, Vasileios Varando, Gherardo Camps Valls, Gustau 2024 Large Language Models for Causal Hypothesis Generation in Science Machine Learning-Science And Technology 6 13001","raw_type":"journal article"}],"best_oa_location":{"id":"doi:10.1088/2632-2153/ada47f","is_oa":true,"landing_page_url":"https://doi.org/10.1088/2632-2153/ada47f","pdf_url":null,"source":{"id":"https://openalex.org/S4210200687","display_name":"Machine Learning Science and Technology","issn_l":"2632-2153","issn":["2632-2153"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320083","host_organization_name":"IOP Publishing","host_organization_lineage":["https://openalex.org/P4310320083","https://openalex.org/P4310311669"],"host_organization_lineage_names":["IOP Publishing","Institute of Physics"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Machine Learning: Science and Technology","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/13","display_name":"Climate action","score":0.8100000023841858}],"awards":[{"id":"https://openalex.org/G3984029971","display_name":null,"funder_award_id":"Prometeo (CIPROM/2021/056)","funder_id":"https://openalex.org/F4320336489","funder_display_name":"Conselleria de Innovaci\u00f3n, Universidades, Ciencia y Sociedad Digital, Generalitat Valenciana"},{"id":"https://openalex.org/G4383332597","display_name":null,"funder_award_id":"Causal4Africa","funder_id":"https://openalex.org/F4320308943","funder_display_name":"Microsoft Research"}],"funders":[{"id":"https://openalex.org/F4320308943","display_name":"Microsoft Research","ror":"https://ror.org/00d0nc645"},{"id":"https://openalex.org/F4320309764","display_name":"Fundaci\u00f3n BBVA","ror":"https://ror.org/01jzs3b90"},{"id":"https://openalex.org/F4320334678","display_name":"European Research Council","ror":"https://ror.org/0472cxd90"},{"id":"https://openalex.org/F4320336489","display_name":"Conselleria de Innovaci\u00f3n, Universidades, Ciencia y Sociedad Digital, Generalitat Valenciana","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":164,"referenced_works":["https://openalex.org/W793342979","https://openalex.org/W1851422093","https://openalex.org/W1967411964","https://openalex.org/W1985026895","https://openalex.org/W1993451046","https://openalex.org/W2025803032","https://openalex.org/W2053043513","https://openalex.org/W2055509010","https://openalex.org/W2073307618","https://openalex.org/W2094444890","https://openalex.org/W2108598243","https://openalex.org/W2116993992","https://openalex.org/W2117539524","https://openalex.org/W2117663940","https://openalex.org/W2127214298","https://openalex.org/W2144731007","https://openalex.org/W2149405308","https://openalex.org/W2154293840","https://openalex.org/W2163286025","https://openalex.org/W2205558186","https://openalex.org/W2249676289","https://openalex.org/W2289979378","https://openalex.org/W2560486644","https://openalex.org/W2563863808","https://openalex.org/W2742569683","https://openalex.org/W2788264713","https://openalex.org/W2792309568","https://openalex.org/W2797510035","https://openalex.org/W2899283552","https://openalex.org/W2913323966","https://openalex.org/W2922853138","https://openalex.org/W2948579453","https://openalex.org/W2949505632","https://openalex.org/W2966266579","https://openalex.org/W2979638007","https://openalex.org/W2991713810","https://openalex.org/W2998768810","https://openalex.org/W3000034219","https://openalex.org/W3010849941","https://openalex.org/W3023021572","https://openalex.org/W3031652686","https://openalex.org/W3034109669","https://openalex.org/W3082292479","https://openalex.org/W3091801801","https://openalex.org/W3123436326","https://openalex.org/W3128523699","https://openalex.org/W3154575616","https://openalex.org/W3157340769","https://openalex.org/W3195830470","https://openalex.org/W4220858968","https://openalex.org/W4224105068","https://openalex.org/W4225984022","https://openalex.org/W4281717555","https://openalex.org/W4282928051","https://openalex.org/W4323349244","https://openalex.org/W4362667132","https://openalex.org/W4362723650","https://openalex.org/W4367188881","https://openalex.org/W4367692219","https://openalex.org/W4378501037","https://openalex.org/W4380361804","https://openalex.org/W4382281637","https://openalex.org/W4386240783","https://openalex.org/W4386977720","https://openalex.org/W4387780733","https://openalex.org/W4387799818","https://openalex.org/W4388473546","https://openalex.org/W4388685549","https://openalex.org/W4389518686","https://openalex.org/W4389520370","https://openalex.org/W4389524307","https://openalex.org/W4390742710","https://openalex.org/W4391876619","https://openalex.org/W4399843467","https://openalex.org/W4401042333","https://openalex.org/W4401042444","https://openalex.org/W4401043168","https://openalex.org/W4403582426","https://openalex.org/W4404188625","https://openalex.org/W6602512366","https://openalex.org/W6603619680","https://openalex.org/W6634414501","https://openalex.org/W6634570623","https://openalex.org/W6635147717","https://openalex.org/W6638557351","https://openalex.org/W6639134244","https://openalex.org/W6680113486","https://openalex.org/W6681187235","https://openalex.org/W6681290437","https://openalex.org/W6691452637","https://openalex.org/W6729947263","https://openalex.org/W6742182809","https://openalex.org/W6744074247","https://openalex.org/W6746077651","https://openalex.org/W6756087004","https://openalex.org/W6757988370","https://openalex.org/W6763298236","https://openalex.org/W6777276865","https://openalex.org/W6777615688","https://openalex.org/W6780164128","https://openalex.org/W6796126288","https://openalex.org/W6802629465","https://openalex.org/W6803674193","https://openalex.org/W6809646742","https://openalex.org/W6811110424","https://openalex.org/W6838324831","https://openalex.org/W6839193947","https://openalex.org/W6839328737","https://openalex.org/W6846201122","https://openalex.org/W6846223019","https://openalex.org/W6850132586","https://openalex.org/W6851147835","https://openalex.org/W6851557065","https://openalex.org/W6851641207","https://openalex.org/W6853083917","https://openalex.org/W6853384840","https://openalex.org/W6853465110","https://openalex.org/W6853562202","https://openalex.org/W6854140653","https://openalex.org/W6854151963","https://openalex.org/W6854293000","https://openalex.org/W6854372151","https://openalex.org/W6855732128","https://openalex.org/W6855844941","https://openalex.org/W6856228040","https://openalex.org/W6856557778","https://openalex.org/W6856662745","https://openalex.org/W6856701787","https://openalex.org/W6857080369","https://openalex.org/W6857414345","https://openalex.org/W6857605197","https://openalex.org/W6857652597","https://openalex.org/W6857748520","https://openalex.org/W6858047854","https://openalex.org/W6858227226","https://openalex.org/W6858522248","https://openalex.org/W6858905764","https://openalex.org/W6859130558","https://openalex.org/W6860415822","https://openalex.org/W6860644145","https://openalex.org/W6860952301","https://openalex.org/W6861304040","https://openalex.org/W6861375920","https://openalex.org/W6861421105","https://openalex.org/W6861486358","https://openalex.org/W6861557549","https://openalex.org/W6862210960","https://openalex.org/W6862292021","https://openalex.org/W6862420076","https://openalex.org/W6862548038","https://openalex.org/W6862640527","https://openalex.org/W6862850023","https://openalex.org/W6863036425","https://openalex.org/W6864196714","https://openalex.org/W6864285165","https://openalex.org/W6866777294","https://openalex.org/W6868352394","https://openalex.org/W6868407435","https://openalex.org/W6870041601","https://openalex.org/W6870164130","https://openalex.org/W6887904745","https://openalex.org/W7057284805","https://openalex.org/W7072069970","https://openalex.org/W7075994851"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W4391913857","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W4396696052"],"abstract_inverted_index":{"Abstract":[0],"Towards":[1],"the":[2,6,13,15,18,30,167],"goal":[3],"of":[4,101,169],"understanding":[5],"causal":[7,46,65,86,115,132],"structure":[8],"underlying":[9],"complex":[10],"systems\u2014such":[11],"as":[12,78,146],"Earth,":[14],"climate,":[16],"or":[17],"brain\u2014integrating":[19],"Large":[20],"language":[21],"models":[22],"(LLMs)":[23],"with":[24],"data-driven":[25,108],"and":[26,39,71,89,107,118,153],"domain-expertise-driven":[27],"approaches":[28,113],"has":[29],"potential":[31],"to":[32],"become":[33],"a":[34,61,99],"game-changer,":[35],"especially":[36],"in":[37,53],"data":[38],"expertise-limited":[40],"scenarios.":[41],"Debates":[42],"persist":[43],"around":[44],"LLMs\u2019":[45],"reasoning":[47,157],"capacities.":[48],"However,":[49],"rather":[50],"than":[51],"engaging":[52],"philosophical":[54],"debates,":[55],"we":[56,97,165],"propose":[57],"integrating":[58],"LLMs":[59,77],"into":[60],"scientific":[62],"framework":[63],"for":[64,85,93,104,114,137,160],"hypothesis":[66,87,116],"generation":[67,117],"alongside":[68],"expert":[69],"knowledge":[70],"data.":[72],"Our":[73],"goals":[74],"include":[75],"formalizing":[76],"probabilistic":[79],"imperfect":[80,141],"experts,":[81,105],"developing":[82,161],"adaptive":[83],"methods":[84,103],"generation,":[88],"establishing":[90],"universal":[91],"benchmarks":[92],"comprehensive":[94],"comparisons.":[95],"Specifically,":[96],"introduce":[98],"spectrum":[100],"integration":[102],"LLMs,":[106],"approaches.":[109],"We":[110],"review":[111],"existing":[112],"classify":[119],"them":[120],"within":[121],"this":[122],"spectrum.":[123],"As":[124],"an":[125],"example,":[126],"our":[127],"hybrid":[128],"(LLM":[129],"+":[130],"data)":[131],"discovery":[133],"algorithm":[134],"illustrates":[135],"ways":[136],"deeper":[138],"integration.":[139],"Characterizing":[140],"experts":[142],"along":[143],"dimensions":[144],"such":[145],"(1)":[147],"reliability,":[148],"(2)":[149],"consistency,":[150],"(3)":[151],"uncertainty,":[152],"(4)":[154],"content":[155],"vs.":[156],"are":[158],"emphasized":[159],"adaptable":[162],"methods.":[163],"Lastly,":[164],"stress":[166],"importance":[168],"model-agnostic":[170],"benchmarks.":[171]},"counts_by_year":[{"year":2026,"cited_by_count":6},{"year":2025,"cited_by_count":8}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
