{"id":"https://openalex.org/W4403054811","doi":"https://doi.org/10.1088/2632-2153/ad829d","title":"IDEEA: information diffusion model for integrating gene expression and EEG data in identifying Alzheimer\u2019s disease markers","display_name":"IDEEA: information diffusion model for integrating gene expression and EEG data in identifying Alzheimer\u2019s disease markers","publication_year":2024,"publication_date":"2024-10-02","ids":{"openalex":"https://openalex.org/W4403054811","doi":"https://doi.org/10.1088/2632-2153/ad829d"},"language":"en","primary_location":{"id":"doi:10.1088/2632-2153/ad829d","is_oa":true,"landing_page_url":"https://doi.org/10.1088/2632-2153/ad829d","pdf_url":"https://iopscience.iop.org/article/10.1088/2632-2153/ad829d/pdf","source":{"id":"https://openalex.org/S4210200687","display_name":"Machine Learning Science and Technology","issn_l":"2632-2153","issn":["2632-2153"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320083","host_organization_name":"IOP Publishing","host_organization_lineage":["https://openalex.org/P4310320083","https://openalex.org/P4310311669"],"host_organization_lineage_names":["IOP Publishing","Institute of Physics"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Machine Learning: Science and Technology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://iopscience.iop.org/article/10.1088/2632-2153/ad829d/pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5098577713","display_name":"Enes Ozelbas","orcid":"https://orcid.org/0000-0003-4665-1952"},"institutions":[{"id":"https://openalex.org/I4101805","display_name":"Y\u0131ld\u0131z Technical University","ror":"https://ror.org/0547yzj13","country_code":"TR","type":"education","lineage":["https://openalex.org/I4101805"]}],"countries":["TR"],"is_corresponding":true,"raw_author_name":"Enes Ozelbas","raw_affiliation_strings":["Computer Engineering, Yildiz Technical University, Istanbul, T\u00fcrkiye"],"raw_orcid":"https://orcid.org/0000-0003-4665-1952","affiliations":[{"raw_affiliation_string":"Computer Engineering, Yildiz Technical University, Istanbul, T\u00fcrkiye","institution_ids":["https://openalex.org/I4101805"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031532273","display_name":"Tuba Sevimo\u011flu","orcid":"https://orcid.org/0000-0003-4563-3154"},"institutions":[{"id":"https://openalex.org/I4210128276","display_name":"Sa\u011fl\u0131k Bilimleri \u00dcniversitesi","ror":"https://ror.org/03k7bde87","country_code":"TR","type":"education","lineage":["https://openalex.org/I4210128276"]},{"id":"https://openalex.org/I872922937","display_name":"University of Health Sciences Antigua","ror":"https://ror.org/01wdhap14","country_code":"AG","type":"education","lineage":["https://openalex.org/I872922937"]}],"countries":["AG","TR"],"is_corresponding":false,"raw_author_name":"Tuba Sevimoglu","raw_affiliation_strings":["Bioengineering, University of Health Sciences, Istanbul, T\u00fcrkiye"],"raw_orcid":"https://orcid.org/0000-0003-4563-3154","affiliations":[{"raw_affiliation_string":"Bioengineering, University of Health Sciences, Istanbul, T\u00fcrkiye","institution_ids":["https://openalex.org/I4210128276","https://openalex.org/I872922937"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5091769289","display_name":"Tamer Kahveci","orcid":"https://orcid.org/0000-0002-4403-8612"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tamer Kahveci","raw_affiliation_strings":["Computer and Information Sciences and Engineering, University of Florida, Gainesville, FL, United States of America"],"raw_orcid":"https://orcid.org/0000-0002-4403-8612","affiliations":[{"raw_affiliation_string":"Computer and Information Sciences and Engineering, University of Florida, Gainesville, FL, United States of America","institution_ids":["https://openalex.org/I33213144"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5098577713"],"corresponding_institution_ids":["https://openalex.org/I4101805"],"apc_list":{"value":3000,"currency":"USD","value_usd":3000},"apc_paid":{"value":3000,"currency":"USD","value_usd":3000},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.15827785,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"5","issue":"4","first_page":"045016","last_page":"045016"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12702","display_name":"Brain Tumor Detection and Classification","score":0.7484999895095825,"subfield":{"id":"https://openalex.org/subfields/2808","display_name":"Neurology"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12702","display_name":"Brain Tumor Detection and Classification","score":0.7484999895095825,"subfield":{"id":"https://openalex.org/subfields/2808","display_name":"Neurology"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/electroencephalography","display_name":"Electroencephalography","score":0.6190217733383179},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.6007393002510071},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.495068222284317},{"id":"https://openalex.org/keywords/diffusion","display_name":"Diffusion","score":0.4949011206626892},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4791956841945648},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.45730286836624146},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.4516798257827759},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3939618468284607},{"id":"https://openalex.org/keywords/neuroscience","display_name":"Neuroscience","score":0.38730260729789734},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2730052173137665},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.25878816843032837},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.21309754252433777},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.18606501817703247}],"concepts":[{"id":"https://openalex.org/C522805319","wikidata":"https://www.wikidata.org/wiki/Q179965","display_name":"Electroencephalography","level":2,"score":0.6190217733383179},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.6007393002510071},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.495068222284317},{"id":"https://openalex.org/C69357855","wikidata":"https://www.wikidata.org/wiki/Q163214","display_name":"Diffusion","level":2,"score":0.4949011206626892},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4791956841945648},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.45730286836624146},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.4516798257827759},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3939618468284607},{"id":"https://openalex.org/C169760540","wikidata":"https://www.wikidata.org/wiki/Q207011","display_name":"Neuroscience","level":1,"score":0.38730260729789734},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2730052173137665},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.25878816843032837},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.21309754252433777},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.18606501817703247},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C97355855","wikidata":"https://www.wikidata.org/wiki/Q11473","display_name":"Thermodynamics","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1088/2632-2153/ad829d","is_oa":true,"landing_page_url":"https://doi.org/10.1088/2632-2153/ad829d","pdf_url":"https://iopscience.iop.org/article/10.1088/2632-2153/ad829d/pdf","source":{"id":"https://openalex.org/S4210200687","display_name":"Machine Learning Science and Technology","issn_l":"2632-2153","issn":["2632-2153"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320083","host_organization_name":"IOP Publishing","host_organization_lineage":["https://openalex.org/P4310320083","https://openalex.org/P4310311669"],"host_organization_lineage_names":["IOP Publishing","Institute of Physics"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Machine Learning: Science and Technology","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:445d4afbf9ae4cda88b87426218fce02","is_oa":true,"landing_page_url":"https://doaj.org/article/445d4afbf9ae4cda88b87426218fce02","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Machine Learning: Science and Technology, Vol 5, Iss 4, p 045016 (2024)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1088/2632-2153/ad829d","is_oa":true,"landing_page_url":"https://doi.org/10.1088/2632-2153/ad829d","pdf_url":"https://iopscience.iop.org/article/10.1088/2632-2153/ad829d/pdf","source":{"id":"https://openalex.org/S4210200687","display_name":"Machine Learning Science and Technology","issn_l":"2632-2153","issn":["2632-2153"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320083","host_organization_name":"IOP Publishing","host_organization_lineage":["https://openalex.org/P4310320083","https://openalex.org/P4310311669"],"host_organization_lineage_names":["IOP Publishing","Institute of Physics"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Machine Learning: Science and Technology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G7167806114","display_name":null,"funder_award_id":"2111679","funder_id":"https://openalex.org/F4320337387","funder_display_name":"Division of Computing and Communication Foundations"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320337387","display_name":"Division of Computing and Communication Foundations","ror":"https://ror.org/01mng8331"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4403054811.pdf","grobid_xml":"https://content.openalex.org/works/W4403054811.grobid-xml"},"referenced_works_count":47,"referenced_works":["https://openalex.org/W1847168837","https://openalex.org/W2063665329","https://openalex.org/W2087243986","https://openalex.org/W2096173332","https://openalex.org/W2106822551","https://openalex.org/W2123636362","https://openalex.org/W2255215236","https://openalex.org/W2474747771","https://openalex.org/W2531181314","https://openalex.org/W2563078526","https://openalex.org/W2624768339","https://openalex.org/W2793019582","https://openalex.org/W2909776027","https://openalex.org/W2934819789","https://openalex.org/W2983166786","https://openalex.org/W2990581109","https://openalex.org/W3025084871","https://openalex.org/W3111509171","https://openalex.org/W3134747685","https://openalex.org/W3170944906","https://openalex.org/W3185966651","https://openalex.org/W3193405787","https://openalex.org/W3193810047","https://openalex.org/W3199972090","https://openalex.org/W3206800693","https://openalex.org/W4206116571","https://openalex.org/W4207068566","https://openalex.org/W4210493947","https://openalex.org/W4221128145","https://openalex.org/W4281972751","https://openalex.org/W4290466964","https://openalex.org/W4294131970","https://openalex.org/W4307462465","https://openalex.org/W4318482678","https://openalex.org/W4319303360","https://openalex.org/W4319982255","https://openalex.org/W4320731290","https://openalex.org/W4323355361","https://openalex.org/W4323832104","https://openalex.org/W4323924988","https://openalex.org/W4324129240","https://openalex.org/W4324309277","https://openalex.org/W4361004505","https://openalex.org/W4378528024","https://openalex.org/W4387336043","https://openalex.org/W4388537982","https://openalex.org/W4396853190"],"related_works":["https://openalex.org/W2922348724","https://openalex.org/W200322357","https://openalex.org/W2130428257","https://openalex.org/W4308951944","https://openalex.org/W2057366091","https://openalex.org/W4312960290","https://openalex.org/W2049513647","https://openalex.org/W2988848585","https://openalex.org/W4233722919","https://openalex.org/W4323929055"],"abstract_inverted_index":{"Abstract":[0],"Understanding":[1],"the":[2,14,24,28,42,87,111,115,177,189,232,259,271],"genetic":[3,106,233],"components":[4],"of":[5,16,31,45,114,155,188,202,221,228,274],"Alzheimer\u2019s":[6,63],"disease":[7,64],"(AD)":[8],"via":[9],"transcriptome":[10,43],"analysis":[11],"often":[12],"necessitates":[13],"use":[15],"invasive":[17,29],"methods.":[18],"This":[19,265],"work":[20],"focuses":[21],"on":[22],"overcoming":[23],"difficulties":[25],"associated":[26],"with":[27,142,158,170,199,216,247],"process":[30],"collecting":[32],"brain":[33,95,261],"tissue":[34,262],"samples":[35],"in":[36,61,131,219],"order":[37],"to":[38,109,126,149,162],"measure":[39],"and":[40,58,75,89,238],"investigate":[41],"behavior":[44],"AD.":[46,150],"Our":[47,118,136,204,242],"approach":[48,108,243],"called":[49],"IDEEA":[50,123],"(Information":[51],"Diffusion":[52],"model":[53],"for":[54],"integrating":[55],"gene":[56,129,239],"Expression":[57],"EEG":[59,164,252,278],"data":[60,83],"identifying":[62],"markers)":[65],"involves":[66],"systematically":[67],"linking":[68],"two":[69,82],"different":[70],"but":[71,211],"complementary":[72],"modalities:":[73],"transcriptomics":[74],"electroencephalogram":[76],"(EEG)":[77],"data.":[78,117],"We":[79,224],"preprocess":[80],"these":[81],"types":[84],"by":[85,196],"calculating":[86],"spectral":[88],"transcriptional":[90],"sample":[91],"distances,":[92],"over":[93],"11":[94],"regions":[96],"encompassing":[97],"6":[98],"distinct":[99,112],"frequency":[100,181,256],"bands.":[101,174],"Subsequently,":[102],"we":[103],"employ":[104],"a":[105,200,267],"algorithm":[107,137,234],"integrate":[110],"features":[113],"preprocessed":[116],"experimental":[119],"results":[120],"show":[121],"that":[122,144,214],"converges":[124],"rapidly":[125],"local":[127],"optima":[128],"subsets,":[130],"fewer":[132],"than":[133],"250":[134],"iterations.":[135],"identifies":[138,208],"novel":[139],"genes":[140,143,157,186,195,210,213,218,246],"along":[141],"have":[145],"previously":[146],"been":[147],"linked":[148],"It":[151],"is":[152,266],"also":[153,212],"capable":[154],"detecting":[156],"transcription":[159,222,248],"patterns":[160,172,249],"specific":[161],"individual":[163],"bands":[165],"as":[166,168],"well":[167],"those":[169],"common":[171],"among":[173],"In":[175],"particular,":[176],"alpha2":[178],"(10\u201313":[179],"Hz)":[180],"band":[182],"yielded":[183],"8":[184],"AD-associated":[185],"out":[187],"top":[190],"100":[191],"most":[192],"frequently":[193],"selected":[194],"our":[197,229],"algorithm,":[198],"p-value":[201],"0.05.":[203],"method":[205],"not":[206],"only":[207],"AD-related":[209],"interact":[215],"AD":[217,275],"terms":[220],"regulation.":[223],"evaluated":[225],"various":[226,255],"aspects":[227],"approach,":[230],"including":[231],"performance,":[235],"band-pair":[236],"association":[237],"interaction":[240],"topology.":[241],"reveals":[244],"AD-relevant":[245],"inferred":[250],"from":[251],"alone,":[253],"across":[254],"bands,":[257],"avoiding":[258],"risky":[260],"collection":[263],"process.":[264],"significant":[268],"advancement":[269],"toward":[270],"early":[272],"identification":[273],"using":[276],"non-invasive":[277],"recordings.":[279]},"counts_by_year":[],"updated_date":"2026-08-21T09:56:20.448147","created_date":"2025-10-10T00:00:00"}
