{"id":"https://openalex.org/W3208532694","doi":"https://doi.org/10.1088/2632-2153/ac3de0","title":"Deeptime: a Python library for machine learning dynamical models from time series data","display_name":"Deeptime: a Python library for machine learning dynamical models from time series data","publication_year":2021,"publication_date":"2021-11-26","ids":{"openalex":"https://openalex.org/W3208532694","doi":"https://doi.org/10.1088/2632-2153/ac3de0","mag":"3208532694"},"language":"en","primary_location":{"id":"doi:10.1088/2632-2153/ac3de0","is_oa":true,"landing_page_url":"https://doi.org/10.1088/2632-2153/ac3de0","pdf_url":"https://iopscience.iop.org/article/10.1088/2632-2153/ac3de0/pdf","source":{"id":"https://openalex.org/S4210200687","display_name":"Machine Learning Science and Technology","issn_l":"2632-2153","issn":["2632-2153"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320083","host_organization_name":"IOP Publishing","host_organization_lineage":["https://openalex.org/P4310320083","https://openalex.org/P4310311669"],"host_organization_lineage_names":["IOP Publishing","Institute of Physics"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Machine Learning: Science and Technology","raw_type":"journal-article"},"type":"preprint","indexed_in":["arxiv","crossref","datacite","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://iopscience.iop.org/article/10.1088/2632-2153/ac3de0/pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5050269164","display_name":"Moritz Hoffmann","orcid":"https://orcid.org/0000-0002-9533-8586"},"institutions":[{"id":"https://openalex.org/I75951250","display_name":"Freie Universit\u00e4t Berlin","ror":"https://ror.org/046ak2485","country_code":"DE","type":"education","lineage":["https://openalex.org/I75951250"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Moritz Hoffmann","raw_affiliation_strings":["Fachbereich Mathematik und Informatik, Freie Universit\u00e4t Berlin, 14195 Berlin, Germany"],"raw_orcid":"https://orcid.org/0000-0002-9533-8586","affiliations":[{"raw_affiliation_string":"Fachbereich Mathematik und Informatik, Freie Universit\u00e4t Berlin, 14195 Berlin, Germany","institution_ids":["https://openalex.org/I75951250"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050928281","display_name":"Martin K. Scherer","orcid":"https://orcid.org/0000-0002-7983-4387"},"institutions":[{"id":"https://openalex.org/I75951250","display_name":"Freie Universit\u00e4t Berlin","ror":"https://ror.org/046ak2485","country_code":"DE","type":"education","lineage":["https://openalex.org/I75951250"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Martin Scherer","raw_affiliation_strings":["Fachbereich Mathematik und Informatik, Freie Universit\u00e4t Berlin, 14195 Berlin, Germany"],"raw_orcid":"https://orcid.org/0000-0002-7983-4387","affiliations":[{"raw_affiliation_string":"Fachbereich Mathematik und Informatik, Freie Universit\u00e4t Berlin, 14195 Berlin, Germany","institution_ids":["https://openalex.org/I75951250"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024984944","display_name":"Tim Hempel","orcid":"https://orcid.org/0000-0002-0073-9353"},"institutions":[{"id":"https://openalex.org/I75951250","display_name":"Freie Universit\u00e4t Berlin","ror":"https://ror.org/046ak2485","country_code":"DE","type":"education","lineage":["https://openalex.org/I75951250"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Tim Hempel","raw_affiliation_strings":["Fachbereich Mathematik und Informatik, Freie Universit\u00e4t Berlin, 14195 Berlin, Germany","Fachbereich Physik, Freie Universit\u00e4t Berlin, 14195 Berlin, Germany"],"raw_orcid":"https://orcid.org/0000-0002-0073-9353","affiliations":[{"raw_affiliation_string":"Fachbereich Mathematik und Informatik, Freie Universit\u00e4t Berlin, 14195 Berlin, Germany","institution_ids":["https://openalex.org/I75951250"]},{"raw_affiliation_string":"Fachbereich Physik, Freie Universit\u00e4t Berlin, 14195 Berlin, Germany","institution_ids":["https://openalex.org/I75951250"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014208179","display_name":"Andreas Mardt","orcid":"https://orcid.org/0000-0002-7353-6063"},"institutions":[{"id":"https://openalex.org/I75951250","display_name":"Freie Universit\u00e4t Berlin","ror":"https://ror.org/046ak2485","country_code":"DE","type":"education","lineage":["https://openalex.org/I75951250"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Andreas Mardt","raw_affiliation_strings":["Fachbereich Mathematik und Informatik, Freie Universit\u00e4t Berlin, 14195 Berlin, Germany"],"raw_orcid":"https://orcid.org/0000-0002-7353-6063","affiliations":[{"raw_affiliation_string":"Fachbereich Mathematik und Informatik, Freie Universit\u00e4t Berlin, 14195 Berlin, Germany","institution_ids":["https://openalex.org/I75951250"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037942573","display_name":"Brian M. de Silva","orcid":"https://orcid.org/0000-0003-0944-900X"},"institutions":[{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Brian de Silva","raw_affiliation_strings":["Department of Applied Mathematics, University of Washington, Seattle, WA 98105, United States of America"],"raw_orcid":"https://orcid.org/0000-0003-0944-900X","affiliations":[{"raw_affiliation_string":"Department of Applied Mathematics, University of Washington, Seattle, WA 98105, United States of America","institution_ids":["https://openalex.org/I201448701"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068372414","display_name":"Brooke E. Husic","orcid":"https://orcid.org/0000-0002-8020-3750"},"institutions":[{"id":"https://openalex.org/I20089843","display_name":"Princeton University","ror":"https://ror.org/00hx57361","country_code":"US","type":"education","lineage":["https://openalex.org/I20089843"]},{"id":"https://openalex.org/I75951250","display_name":"Freie Universit\u00e4t Berlin","ror":"https://ror.org/046ak2485","country_code":"DE","type":"education","lineage":["https://openalex.org/I75951250"]}],"countries":["DE","US"],"is_corresponding":false,"raw_author_name":"Brooke E Husic","raw_affiliation_strings":["Center for the Physics of Biological Function, Princeton University, Princeton, NJ 08540, United States of America","Fachbereich Mathematik und Informatik, Freie Universit\u00e4t Berlin, 14195 Berlin, Germany","Lewis Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08540, United States of America","Princeton Center for Theoretical Science, Princeton University, Princeton, NJ 08540, United States of America"],"raw_orcid":"https://orcid.org/0000-0002-8020-3750","affiliations":[{"raw_affiliation_string":"Center for the Physics of Biological Function, Princeton University, Princeton, NJ 08540, United States of America","institution_ids":["https://openalex.org/I20089843"]},{"raw_affiliation_string":"Fachbereich Mathematik und Informatik, Freie Universit\u00e4t Berlin, 14195 Berlin, Germany","institution_ids":["https://openalex.org/I75951250"]},{"raw_affiliation_string":"Lewis Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08540, United States of America","institution_ids":["https://openalex.org/I20089843"]},{"raw_affiliation_string":"Princeton Center for Theoretical Science, Princeton University, Princeton, NJ 08540, United States of America","institution_ids":["https://openalex.org/I20089843"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031087309","display_name":"Stefan Klus","orcid":"https://orcid.org/0000-0002-9672-3806"},"institutions":[{"id":"https://openalex.org/I28290843","display_name":"University of Surrey","ror":"https://ror.org/00ks66431","country_code":"GB","type":"education","lineage":["https://openalex.org/I28290843"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Stefan Klus","raw_affiliation_strings":["Department of Mathematics, University of Surrey, Guildford GU2 7XH, United Kingdom"],"raw_orcid":"https://orcid.org/0000-0002-9672-3806","affiliations":[{"raw_affiliation_string":"Department of Mathematics, University of Surrey, Guildford GU2 7XH, United Kingdom","institution_ids":["https://openalex.org/I28290843"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060090190","display_name":"Hao Wu","orcid":"https://orcid.org/0000-0002-2170-0618"},"institutions":[{"id":"https://openalex.org/I116953780","display_name":"Tongji University","ror":"https://ror.org/03rc6as71","country_code":"CN","type":"education","lineage":["https://openalex.org/I116953780"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hao Wu","raw_affiliation_strings":["School of Mathematical Sciences, Tongji University, Shanghai 200092, People\u2019s Republic of China"],"raw_orcid":"https://orcid.org/0000-0002-2170-0618","affiliations":[{"raw_affiliation_string":"School of Mathematical Sciences, Tongji University, Shanghai 200092, People\u2019s Republic of China","institution_ids":["https://openalex.org/I116953780"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017883042","display_name":"Nathan Kutz","orcid":null},"institutions":[{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nathan Kutz","raw_affiliation_strings":["Department of Applied Mathematics, University of Washington, Seattle, WA 98105, United States of America"],"raw_orcid":"https://orcid.org/0000-0002-6004-2275","affiliations":[{"raw_affiliation_string":"Department of Applied Mathematics, University of Washington, Seattle, WA 98105, United States of America","institution_ids":["https://openalex.org/I201448701"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062653961","display_name":"Steven L. Brunton","orcid":"https://orcid.org/0000-0002-6565-5118"},"institutions":[{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Steven L Brunton","raw_affiliation_strings":["Department of Mechanical Engineering, University of Washington, Seattle, WA 98105, United States of America"],"raw_orcid":"https://orcid.org/0000-0002-6565-5118","affiliations":[{"raw_affiliation_string":"Department of Mechanical Engineering, University of Washington, Seattle, WA 98105, United States of America","institution_ids":["https://openalex.org/I201448701"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5055016850","display_name":"Frank No\u00e9","orcid":"https://orcid.org/0000-0003-4169-9324"},"institutions":[{"id":"https://openalex.org/I74775410","display_name":"Rice University","ror":"https://ror.org/008zs3103","country_code":"US","type":"education","lineage":["https://openalex.org/I74775410"]},{"id":"https://openalex.org/I75951250","display_name":"Freie Universit\u00e4t Berlin","ror":"https://ror.org/046ak2485","country_code":"DE","type":"education","lineage":["https://openalex.org/I75951250"]}],"countries":["DE","US"],"is_corresponding":true,"raw_author_name":"Frank No\u00e9","raw_affiliation_strings":["Fachbereich Mathematik und Informatik, Freie Universit\u00e4t Berlin, 14195 Berlin, Germany","Fachbereich Physik, Freie Universit\u00e4t Berlin, 14195 Berlin, Germany","Rice University, Department of Chemistry, Houston, TX 77005, United States of America"],"raw_orcid":"https://orcid.org/0000-0003-4169-9324","affiliations":[{"raw_affiliation_string":"Fachbereich Mathematik und Informatik, Freie Universit\u00e4t Berlin, 14195 Berlin, Germany","institution_ids":["https://openalex.org/I75951250"]},{"raw_affiliation_string":"Fachbereich Physik, Freie Universit\u00e4t Berlin, 14195 Berlin, Germany","institution_ids":["https://openalex.org/I75951250"]},{"raw_affiliation_string":"Rice University, Department of Chemistry, Houston, TX 77005, United States of America","institution_ids":["https://openalex.org/I74775410"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5055016850"],"corresponding_institution_ids":["https://openalex.org/I74775410","https://openalex.org/I75951250"],"apc_list":{"value":1600,"currency":"GBP","value_usd":1962},"apc_paid":{"value":1600,"currency":"GBP","value_usd":1962},"fwci":1.5372,"has_fulltext":true,"cited_by_count":17,"citation_normalized_percentile":{"value":0.83194444,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":98},"biblio":{"volume":"3","issue":"1","first_page":"015009","last_page":"015009"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11206","display_name":"Model Reduction and Neural Networks","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/3109","display_name":"Statistical and Nonlinear Physics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11206","display_name":"Model Reduction and Neural Networks","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/3109","display_name":"Statistical and Nonlinear Physics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12814","display_name":"Gaussian Processes and Bayesian Inference","score":0.9940999746322632,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13650","display_name":"Computational Physics and Python Applications","score":0.9824000000953674,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.7840604782104492},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6757085919380188},{"id":"https://openalex.org/keywords/estimator","display_name":"Estimator","score":0.5987461805343628},{"id":"https://openalex.org/keywords/markov-chain","display_name":"Markov chain","score":0.49411633610725403},{"id":"https://openalex.org/keywords/statistical-physics","display_name":"Statistical physics","score":0.46996045112609863},{"id":"https://openalex.org/keywords/markov-model","display_name":"Markov model","score":0.4578586518764496},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.44129934906959534},{"id":"https://openalex.org/keywords/hidden-markov-model","display_name":"Hidden Markov model","score":0.4309741258621216},{"id":"https://openalex.org/keywords/series","display_name":"Series (stratigraphy)","score":0.4176279604434967},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3729810416698456},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.34314653277397156},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3431112766265869},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.2006535530090332},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.19955405592918396},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.12647324800491333}],"concepts":[{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.7840604782104492},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6757085919380188},{"id":"https://openalex.org/C185429906","wikidata":"https://www.wikidata.org/wiki/Q1130160","display_name":"Estimator","level":2,"score":0.5987461805343628},{"id":"https://openalex.org/C98763669","wikidata":"https://www.wikidata.org/wiki/Q176645","display_name":"Markov chain","level":2,"score":0.49411633610725403},{"id":"https://openalex.org/C121864883","wikidata":"https://www.wikidata.org/wiki/Q677916","display_name":"Statistical physics","level":1,"score":0.46996045112609863},{"id":"https://openalex.org/C163836022","wikidata":"https://www.wikidata.org/wiki/Q6771326","display_name":"Markov model","level":3,"score":0.4578586518764496},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.44129934906959534},{"id":"https://openalex.org/C23224414","wikidata":"https://www.wikidata.org/wiki/Q176769","display_name":"Hidden Markov model","level":2,"score":0.4309741258621216},{"id":"https://openalex.org/C143724316","wikidata":"https://www.wikidata.org/wiki/Q312468","display_name":"Series (stratigraphy)","level":2,"score":0.4176279604434967},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3729810416698456},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.34314653277397156},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3431112766265869},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.2006535530090332},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.19955405592918396},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.12647324800491333},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0}],"mesh":[],"locations_count":6,"locations":[{"id":"doi:10.1088/2632-2153/ac3de0","is_oa":true,"landing_page_url":"https://doi.org/10.1088/2632-2153/ac3de0","pdf_url":"https://iopscience.iop.org/article/10.1088/2632-2153/ac3de0/pdf","source":{"id":"https://openalex.org/S4210200687","display_name":"Machine Learning Science and Technology","issn_l":"2632-2153","issn":["2632-2153"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320083","host_organization_name":"IOP Publishing","host_organization_lineage":["https://openalex.org/P4310320083","https://openalex.org/P4310311669"],"host_organization_lineage_names":["IOP Publishing","Institute of Physics"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Machine Learning: Science and Technology","raw_type":"journal-article"},{"id":"pmh:oai:arXiv.org:2110.15013","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2110.15013","pdf_url":"https://arxiv.org/pdf/2110.15013","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"mag:3208532694","is_oa":true,"landing_page_url":"https://arxiv.org/pdf/2110.15013v1","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"arXiv (Cornell University)","raw_type":null},{"id":"pmh:oai:refubium.fu-berlin.de:fub188/33470","is_oa":true,"landing_page_url":"https://refubium.fu-berlin.de/handle/fub188/33470","pdf_url":null,"source":{"id":"https://openalex.org/S4306402444","display_name":"Refubium (Universit\u00e4tsbibliothek der Freien Universit\u00e4t Berlin)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I75951250","host_organization_name":"Freie Universit\u00e4t Berlin","host_organization_lineage":["https://openalex.org/I75951250"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"doc-type:article"},{"id":"doi:10.48550/arxiv.2110.15013","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2110.15013","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"},{"id":"doi:10.17169/refubium-33191","is_oa":true,"landing_page_url":"https://doi.org/10.17169/refubium-33191","pdf_url":null,"source":{"id":"https://openalex.org/S7407052913","display_name":"Universit\u00e4tsbibliothek der FU Berlin Hochschulschriftenstelle u. Dokumentenserver","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"doi:10.1088/2632-2153/ac3de0","is_oa":true,"landing_page_url":"https://doi.org/10.1088/2632-2153/ac3de0","pdf_url":"https://iopscience.iop.org/article/10.1088/2632-2153/ac3de0/pdf","source":{"id":"https://openalex.org/S4210200687","display_name":"Machine Learning Science and Technology","issn_l":"2632-2153","issn":["2632-2153"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320083","host_organization_name":"IOP Publishing","host_organization_lineage":["https://openalex.org/P4310320083","https://openalex.org/P4310311669"],"host_organization_lineage_names":["IOP Publishing","Institute of Physics"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Machine Learning: Science and Technology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1050411572","display_name":null,"funder_award_id":"12171367","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G1473691491","display_name":"Institute for Pure and Applied Mathematics","funder_award_id":"1440415","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G1473792542","display_name":null,"funder_award_id":"22120210133","funder_id":"https://openalex.org/F4320329878","funder_display_name":"Central University Basic Research Fund of China"},{"id":"https://openalex.org/G1582093738","display_name":null,"funder_award_id":"SFB 1114 (Projects A04","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G1785044284","display_name":null,"funder_award_id":"1440415","funder_id":"https://openalex.org/F4320337380","funder_display_name":"Division of Mathematical Sciences"},{"id":"https://openalex.org/G1843762823","display_name":null,"funder_award_id":"SFB 1114","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G2034882502","display_name":null,"funder_award_id":"12171367","funder_id":"https://openalex.org/F4320321885","funder_display_name":"Science and Technology Commission of Shanghai Municipality"},{"id":"https://openalex.org/G2864925893","display_name":null,"funder_award_id":"TRR 186","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G3391145204","display_name":null,"funder_award_id":"CoG 772230 \"ScaleCell\"","funder_id":"https://openalex.org/F4320338335","funder_display_name":"H2020 European Research Council"},{"id":"https://openalex.org/G4304686666","display_name":null,"funder_award_id":"CoG 772230","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G4606321376","display_name":null,"funder_award_id":"2021SHZDZX0100","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5545002291","display_name":null,"funder_award_id":"20JC1413500","funder_id":"https://openalex.org/F4320321885","funder_display_name":"Science and Technology Commission of Shanghai Municipality"},{"id":"https://openalex.org/G5609283529","display_name":null,"funder_award_id":"DMS-1440415","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G5686627504","display_name":null,"funder_award_id":"ERC CoG 772230","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G6052748239","display_name":null,"funder_award_id":"SFB/TRR 186","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G657172661","display_name":"AI Institute in Dynamic Systems","funder_award_id":"2112085","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7669873645","display_name":"Scalable Kinetic Models: From Molecular Dynamics to Cellular Signaling","funder_award_id":"772230","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G8111733239","display_name":null,"funder_award_id":"2021SHZDZX0100","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G8564385935","display_name":null,"funder_award_id":"22120210133","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G897182718","display_name":null,"funder_award_id":"2021SHZDZX0100","funder_id":"https://openalex.org/F4320321885","funder_display_name":"Science and Technology Commission of Shanghai Municipality"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320309292","display_name":"Princeton University","ror":"https://ror.org/00hx57361"},{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"},{"id":"https://openalex.org/F4320321885","display_name":"Science and Technology Commission of Shanghai Municipality","ror":"https://ror.org/03kt66j61"},{"id":"https://openalex.org/F4320329878","display_name":"Central University Basic Research Fund of China","ror":null},{"id":"https://openalex.org/F4320330291","display_name":"Berlin Mathematics Research Center MATH+","ror":null},{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null},{"id":"https://openalex.org/F4320337380","display_name":"Division of Mathematical Sciences","ror":"https://ror.org/051fftw81"},{"id":"https://openalex.org/F4320338335","display_name":"H2020 European Research Council","ror":"https://ror.org/0472cxd90"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3208532694.pdf","grobid_xml":"https://content.openalex.org/works/W3208532694.grobid-xml"},"referenced_works_count":169,"referenced_works":["https://openalex.org/W59181800","https://openalex.org/W234899517","https://openalex.org/W1522301498","https://openalex.org/W1531625368","https://openalex.org/W1575431606","https://openalex.org/W1588424744","https://openalex.org/W1591018827","https://openalex.org/W1621941250","https://openalex.org/W1699734612","https://openalex.org/W1723433682","https://openalex.org/W1908611567","https://openalex.org/W1959608418","https://openalex.org/W1967008192","https://openalex.org/W1977969550","https://openalex.org/W1979070806","https://openalex.org/W1981145361","https://openalex.org/W1989544083","https://openalex.org/W1991133427","https://openalex.org/W1993555435","https://openalex.org/W1995713768","https://openalex.org/W1997054581","https://openalex.org/W2007321142","https://openalex.org/W2010141681","https://openalex.org/W2011301426","https://openalex.org/W2014356541","https://openalex.org/W2025341678","https://openalex.org/W2046290306","https://openalex.org/W2055484248","https://openalex.org/W2056211671","https://openalex.org/W2056454305","https://openalex.org/W2062421175","https://openalex.org/W2063021109","https://openalex.org/W2063536114","https://openalex.org/W2065281489","https://openalex.org/W2065806093","https://openalex.org/W2067035505","https://openalex.org/W2071128523","https://openalex.org/W2074380037","https://openalex.org/W2075243501","https://openalex.org/W2077574412","https://openalex.org/W2078898317","https://openalex.org/W2080914886","https://openalex.org/W2085213650","https://openalex.org/W2086699924","https://openalex.org/W2088647884","https://openalex.org/W2091701505","https://openalex.org/W2111339528","https://openalex.org/W2124101779","https://openalex.org/W2124940540","https://openalex.org/W2125838338","https://openalex.org/W2143592395","https://openalex.org/W2147988069","https://openalex.org/W2150593711","https://openalex.org/W2156871793","https://openalex.org/W2164954534","https://openalex.org/W2170711116","https://openalex.org/W2187274574","https://openalex.org/W2208344185","https://openalex.org/W2226825552","https://openalex.org/W2239232218","https://openalex.org/W2267246336","https://openalex.org/W2294798173","https://openalex.org/W2299660775","https://openalex.org/W2315297180","https://openalex.org/W2332712348","https://openalex.org/W2395962256","https://openalex.org/W2472803348","https://openalex.org/W2482944896","https://openalex.org/W2510030309","https://openalex.org/W2510475640","https://openalex.org/W2525748878","https://openalex.org/W2556930732","https://openalex.org/W2573798107","https://openalex.org/W2577671591","https://openalex.org/W2582771730","https://openalex.org/W2605532580","https://openalex.org/W2615252773","https://openalex.org/W2736124076","https://openalex.org/W2739844829","https://openalex.org/W2740145400","https://openalex.org/W2745805894","https://openalex.org/W2752838977","https://openalex.org/W2765372792","https://openalex.org/W2765861397","https://openalex.org/W2768480811","https://openalex.org/W2768748954","https://openalex.org/W2774755163","https://openalex.org/W2775659970","https://openalex.org/W2777417212","https://openalex.org/W2781487518","https://openalex.org/W2783073729","https://openalex.org/W2785514482","https://openalex.org/W2889716319","https://openalex.org/W2890285991","https://openalex.org/W2902201953","https://openalex.org/W2903246169","https://openalex.org/W2905262640","https://openalex.org/W2957064872","https://openalex.org/W2962698288","https://openalex.org/W2962897886","https://openalex.org/W2963113802","https://openalex.org/W2963210541","https://openalex.org/W2963224943","https://openalex.org/W2963405490","https://openalex.org/W2963426504","https://openalex.org/W2963535512","https://openalex.org/W2963765797","https://openalex.org/W2964078472","https://openalex.org/W2964129632","https://openalex.org/W2964145209","https://openalex.org/W2964149432","https://openalex.org/W2964917500","https://openalex.org/W2969314109","https://openalex.org/W2970971581","https://openalex.org/W2971179937","https://openalex.org/W2973004389","https://openalex.org/W2974580236","https://openalex.org/W2979458970","https://openalex.org/W2979672600","https://openalex.org/W2981825520","https://openalex.org/W2981906852","https://openalex.org/W3000852976","https://openalex.org/W3003257820","https://openalex.org/W3006550916","https://openalex.org/W3028073062","https://openalex.org/W3035965352","https://openalex.org/W3081890464","https://openalex.org/W3086458503","https://openalex.org/W3098898877","https://openalex.org/W3099205493","https://openalex.org/W3099245682","https://openalex.org/W3099423575","https://openalex.org/W3099674394","https://openalex.org/W3099803807","https://openalex.org/W3099878876","https://openalex.org/W3100769368","https://openalex.org/W3100810942","https://openalex.org/W3102306519","https://openalex.org/W3103060822","https://openalex.org/W3103145119","https://openalex.org/W3103516574","https://openalex.org/W3103987666","https://openalex.org/W3104338246","https://openalex.org/W3104556657","https://openalex.org/W3105019514","https://openalex.org/W3105373767","https://openalex.org/W3129637124","https://openalex.org/W3133720149","https://openalex.org/W3159156584","https://openalex.org/W3171437162","https://openalex.org/W3189181746","https://openalex.org/W3209474004","https://openalex.org/W3214543740","https://openalex.org/W4213311833","https://openalex.org/W4238160257","https://openalex.org/W4247385211","https://openalex.org/W6631190155","https://openalex.org/W6636453008","https://openalex.org/W6637572315","https://openalex.org/W6639732818","https://openalex.org/W6640963894","https://openalex.org/W6725805892","https://openalex.org/W6743472333","https://openalex.org/W6743768363","https://openalex.org/W6743945476","https://openalex.org/W6751910084","https://openalex.org/W6766978945","https://openalex.org/W6790085878","https://openalex.org/W7005955626"],"related_works":["https://openalex.org/W3114529347","https://openalex.org/W767249067","https://openalex.org/W3101066868","https://openalex.org/W3123356524","https://openalex.org/W3207318965","https://openalex.org/W2602423270","https://openalex.org/W2964917500","https://openalex.org/W65226868","https://openalex.org/W2964328915","https://openalex.org/W3105538867","https://openalex.org/W3004534841","https://openalex.org/W2396499342","https://openalex.org/W2914869034","https://openalex.org/W3006985187","https://openalex.org/W3082148288","https://openalex.org/W3204812297","https://openalex.org/W2164534257","https://openalex.org/W2888300142","https://openalex.org/W3081659665"],"abstract_inverted_index":{"Abstract":[0],"Generation":[1],"and":[2,27,40,52,57,95,102,109,158,167,182,193],"analysis":[3,151],"of":[4,42,47,60,122,143,150,176,195],"time-series":[5,79],"data":[6,80],"is":[7,64,114,172],"relevant":[8],"to":[9,16,73,132,153],"many":[10],"quantitative":[11],"fields":[12],"ranging":[13],"from":[14],"economics":[15],"fluid":[17],"mechanics.":[18],"In":[19,185],"the":[20,54,61,141,190,196],"physical":[21],"sciences,":[22],"structures":[23],"such":[24,86,106,161],"as":[25,87,98,100,107,162],"metastable":[26],"coherent":[28],"sets,":[29],"slow":[30],"relaxation":[31,165],"processes,":[32],"collective":[33],"variables,":[34],"dominant":[35],"transition":[36,168],"pathways":[37],"or":[38],"manifolds":[39],"channels":[41],"probability":[43],"flow":[44],"can":[45,200],"be":[46,201],"great":[48],"importance":[49],"for":[50,125,174],"understanding":[51],"characterizing":[53],"kinetic,":[55],"thermodynamic":[56],"mechanistic":[58],"properties":[59],"system.":[62],"Deeptime":[63,199],"a":[65,120,148],"general":[66],"purpose":[67],"Python":[68],"library":[69,113,171],"offering":[70],"various":[71],"tools":[72],"estimate":[74],"dynamical":[75,159],"models":[76,90],"based":[77],"on":[78],"including":[81],"conventional":[82],"linear":[83],"learning":[84,104],"methods,":[85],"Markov":[88,93],"state":[89],"(MSMs),":[91],"Hidden":[92],"Models":[94],"Koopman":[96],"models,":[97,128],"well":[99],"kernel":[101],"deep":[103,110,136],"approaches":[105],"VAMPnets":[108],"MSMs.":[111],"The":[112,170],"largely":[115],"compatible":[116],"with":[117],"scikit-learn,":[118],"having":[119],"range":[121],"Estimator":[123],"classes":[124],"these":[126],"different":[127],"but":[129,178],"in":[130,140],"contrast":[131],"scikit-learn":[133],"also":[134,179],"provides":[135],"Model":[137],"classes,":[138],"e.g.":[139],"case":[142],"an":[144],"MSM,":[145],"which":[146],"provide":[147],"multitude":[149],"methods":[152],"compute":[154],"interesting":[155],"thermodynamic,":[156],"kinetic":[157],"quantities,":[160],"free":[163],"energies,":[164],"times":[166],"paths.":[169],"designed":[173],"ease":[175],"use":[177],"easily":[180],"maintainable":[181],"extensible":[183],"code.":[184],"this":[186],"paper":[187],"we":[188],"introduce":[189],"main":[191],"features":[192],"structure":[194],"deeptime":[197],"software.":[198],"found":[202],"under":[203],"https://deeptime-ml.github.io/":[204],".":[205]},"counts_by_year":[{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":3}],"updated_date":"2026-07-08T08:33:18.762332","created_date":"2025-10-10T00:00:00"}
