{"id":"https://openalex.org/W3130442532","doi":"https://doi.org/10.1088/2632-2153/abe6d6","title":"PASSer: prediction of allosteric sites server","display_name":"PASSer: prediction of allosteric sites server","publication_year":2021,"publication_date":"2021-02-16","ids":{"openalex":"https://openalex.org/W3130442532","doi":"https://doi.org/10.1088/2632-2153/abe6d6","mag":"3130442532","pmid":"https://pubmed.ncbi.nlm.nih.gov/34396127"},"language":"en","primary_location":{"id":"doi:10.1088/2632-2153/abe6d6","is_oa":true,"landing_page_url":"https://doi.org/10.1088/2632-2153/abe6d6","pdf_url":"https://iopscience.iop.org/article/10.1088/2632-2153/abe6d6/pdf","source":{"id":"https://openalex.org/S4210200687","display_name":"Machine Learning Science and Technology","issn_l":"2632-2153","issn":["2632-2153"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320083","host_organization_name":"IOP Publishing","host_organization_lineage":["https://openalex.org/P4310320083","https://openalex.org/P4310311669"],"host_organization_lineage_names":["IOP Publishing","Institute of Physics"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Machine Learning: Science and Technology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://iopscience.iop.org/article/10.1088/2632-2153/abe6d6/pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5022395272","display_name":"Hao Tian","orcid":"https://orcid.org/0000-0002-0186-9811"},"institutions":[{"id":"https://openalex.org/I178169726","display_name":"Southern Methodist University","ror":"https://ror.org/042tdr378","country_code":"US","type":"education","lineage":["https://openalex.org/I178169726"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hao Tian","raw_affiliation_strings":["Department of Chemistry, Center for Research Computing, Center for Drug Discovery, Design, and Delivery (CD4), Southern Methodist University, Dallas, Texas, United States of America","Department of Chemistry, Center for Research Computing, Center for Drug Discovery, Design, and Delivery (CD4), Southern Methodist University, Dallas, TX, United States of America"],"raw_orcid":"https://orcid.org/0000-0002-0186-9811","affiliations":[{"raw_affiliation_string":"Department of Chemistry, Center for Research Computing, Center for Drug Discovery, Design, and Delivery (CD4), Southern Methodist University, Dallas, Texas, United States of America","institution_ids":["https://openalex.org/I178169726"]},{"raw_affiliation_string":"Department of Chemistry, Center for Research Computing, Center for Drug Discovery, Design, and Delivery (CD4), Southern Methodist University, Dallas, TX, United States of America","institution_ids":["https://openalex.org/I178169726"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028757824","display_name":"Xi Jiang","orcid":"https://orcid.org/0000-0002-2754-0862"},"institutions":[{"id":"https://openalex.org/I178169726","display_name":"Southern Methodist University","ror":"https://ror.org/042tdr378","country_code":"US","type":"education","lineage":["https://openalex.org/I178169726"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xi Jiang","raw_affiliation_strings":["Department of Statistical Science, Southern Methodist University, Dallas, Texas, United States of America","Department of Statistical Science, Southern Methodist University, Dallas, TX, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Statistical Science, Southern Methodist University, Dallas, Texas, United States of America","institution_ids":["https://openalex.org/I178169726"]},{"raw_affiliation_string":"Department of Statistical Science, Southern Methodist University, Dallas, TX, United States of America","institution_ids":["https://openalex.org/I178169726"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5010373442","display_name":"Peng Tao","orcid":"https://orcid.org/0000-0002-2488-0239"},"institutions":[{"id":"https://openalex.org/I178169726","display_name":"Southern Methodist University","ror":"https://ror.org/042tdr378","country_code":"US","type":"education","lineage":["https://openalex.org/I178169726"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Peng Tao","raw_affiliation_strings":["Department of Chemistry, Center for Research Computing, Center for Drug Discovery, Design, and Delivery (CD4), Southern Methodist University, Dallas, Texas, United States of America","Department of Chemistry, Center for Research Computing, Center for Drug Discovery, Design, and Delivery (CD4), Southern Methodist University, Dallas, TX, United States of America"],"raw_orcid":"https://orcid.org/0000-0002-2488-0239","affiliations":[{"raw_affiliation_string":"Department of Chemistry, Center for Research Computing, Center for Drug Discovery, Design, and Delivery (CD4), Southern Methodist University, Dallas, Texas, United States of America","institution_ids":["https://openalex.org/I178169726"]},{"raw_affiliation_string":"Department of Chemistry, Center for Research Computing, Center for Drug Discovery, Design, and Delivery (CD4), Southern Methodist University, Dallas, TX, United States of America","institution_ids":["https://openalex.org/I178169726"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5010373442"],"corresponding_institution_ids":["https://openalex.org/I178169726"],"apc_list":{"value":1600,"currency":"GBP","value_usd":1962},"apc_paid":{"value":1600,"currency":"GBP","value_usd":1962},"fwci":7.2693,"has_fulltext":false,"cited_by_count":66,"citation_normalized_percentile":{"value":0.97532454,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"2","issue":"3","first_page":"035015","last_page":"035015"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11882","display_name":"Plant biochemistry and biosynthesis","score":0.9837999939918518,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/allosteric-regulation","display_name":"Allosteric regulation","score":0.9612818956375122},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5766404271125793},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.4691183865070343},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.43159496784210205},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3317849934101105},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3304252028465271},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.20267027616500854},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1880679726600647}],"concepts":[{"id":"https://openalex.org/C166342909","wikidata":"https://www.wikidata.org/wiki/Q845326","display_name":"Allosteric regulation","level":3,"score":0.9612818956375122},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5766404271125793},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.4691183865070343},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.43159496784210205},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3317849934101105},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3304252028465271},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.20267027616500854},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1880679726600647},{"id":"https://openalex.org/C181199279","wikidata":"https://www.wikidata.org/wiki/Q8047","display_name":"Enzyme","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1088/2632-2153/abe6d6","is_oa":true,"landing_page_url":"https://doi.org/10.1088/2632-2153/abe6d6","pdf_url":"https://iopscience.iop.org/article/10.1088/2632-2153/abe6d6/pdf","source":{"id":"https://openalex.org/S4210200687","display_name":"Machine Learning Science and Technology","issn_l":"2632-2153","issn":["2632-2153"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320083","host_organization_name":"IOP Publishing","host_organization_lineage":["https://openalex.org/P4310320083","https://openalex.org/P4310311669"],"host_organization_lineage_names":["IOP Publishing","Institute of Physics"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Machine Learning: Science and Technology","raw_type":"journal-article"},{"id":"pmid:34396127","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34396127","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Machine learning: science and technology","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:8360383","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8360383","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Mach Learn Sci Technol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1088/2632-2153/abe6d6","is_oa":true,"landing_page_url":"https://doi.org/10.1088/2632-2153/abe6d6","pdf_url":"https://iopscience.iop.org/article/10.1088/2632-2153/abe6d6/pdf","source":{"id":"https://openalex.org/S4210200687","display_name":"Machine Learning Science and Technology","issn_l":"2632-2153","issn":["2632-2153"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320083","host_organization_name":"IOP Publishing","host_organization_lineage":["https://openalex.org/P4310320083","https://openalex.org/P4310311669"],"host_organization_lineage_names":["IOP Publishing","Institute of Physics"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Machine Learning: Science and Technology","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.41999998688697815,"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being"}],"awards":[{"id":"https://openalex.org/G706801179","display_name":null,"funder_award_id":"R15GM122013","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"}],"funders":[{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W3130442532.pdf"},"referenced_works_count":55,"referenced_works":["https://openalex.org/W273955616","https://openalex.org/W1517566065","https://openalex.org/W1596717185","https://openalex.org/W1797588109","https://openalex.org/W1964439982","https://openalex.org/W1980969309","https://openalex.org/W2006782375","https://openalex.org/W2011703027","https://openalex.org/W2027309027","https://openalex.org/W2028034075","https://openalex.org/W2046468203","https://openalex.org/W2048934130","https://openalex.org/W2077912217","https://openalex.org/W2101234009","https://openalex.org/W2112109058","https://openalex.org/W2116993067","https://openalex.org/W2125299915","https://openalex.org/W2126586461","https://openalex.org/W2130479394","https://openalex.org/W2151794181","https://openalex.org/W2154249927","https://openalex.org/W2157605186","https://openalex.org/W2164088236","https://openalex.org/W2177124199","https://openalex.org/W2234213216","https://openalex.org/W2254489325","https://openalex.org/W2295598076","https://openalex.org/W2315972815","https://openalex.org/W2414667422","https://openalex.org/W2519887557","https://openalex.org/W2616691686","https://openalex.org/W2750485376","https://openalex.org/W2768528779","https://openalex.org/W2794868929","https://openalex.org/W2898364362","https://openalex.org/W2901399222","https://openalex.org/W2903262661","https://openalex.org/W2942255539","https://openalex.org/W2950885851","https://openalex.org/W2962711740","https://openalex.org/W2963613699","https://openalex.org/W2964015378","https://openalex.org/W2971933740","https://openalex.org/W2978484973","https://openalex.org/W3085584475","https://openalex.org/W3088730103","https://openalex.org/W3098119651","https://openalex.org/W3102476541","https://openalex.org/W3116851193","https://openalex.org/W3212317992","https://openalex.org/W6610017368","https://openalex.org/W6675354045","https://openalex.org/W6726873649","https://openalex.org/W6754929296","https://openalex.org/W6767710714"],"related_works":["https://openalex.org/W2961085424","https://openalex.org/W4306674287","https://openalex.org/W3046775127","https://openalex.org/W3170094116","https://openalex.org/W4386462264","https://openalex.org/W3209574120","https://openalex.org/W3107602296","https://openalex.org/W4312192474","https://openalex.org/W4210805261","https://openalex.org/W4387297750"],"abstract_inverted_index":{"information,":[0],"and":[1],"shows":[2],"good":[3],"performance":[4],"under":[5],"multiple":[6],"indicators.":[7],"Prediction":[8],"results":[9],"showed":[10],"that":[11],"84.9%":[12],"of":[13],"allosteric":[14],"pockets":[15],"in":[16,21,46],"the":[17,22],"test":[18],"set":[19],"appeared":[20],"top":[23],"3":[24],"positions.":[25],"The":[26],"PASSer:":[27],"Protein":[28],"Allosteric":[29],"Sites":[30],"Server":[31],"(https://passer.smu.edu),":[32],"along":[33],"with":[34],"a":[35],"command":[36],"line":[37],"interface":[38],"(CLI,":[39],"https://github.com/smutaogroup/passerCLI)":[40],"provide":[41],"insights":[42],"for":[43],"further":[44],"analysis":[45],"drug":[47],"discovery.":[48]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":16},{"year":2024,"cited_by_count":13},{"year":2023,"cited_by_count":17},{"year":2022,"cited_by_count":18}],"updated_date":"2026-04-28T14:05:53.105641","created_date":"2025-10-10T00:00:00"}
