{"id":"https://openalex.org/W4366984791","doi":"https://doi.org/10.1080/21681163.2023.2204978","title":"Mouse-to-human transfer learning for glomerulus segmentation","display_name":"Mouse-to-human transfer learning for glomerulus segmentation","publication_year":2023,"publication_date":"2023-04-25","ids":{"openalex":"https://openalex.org/W4366984791","doi":"https://doi.org/10.1080/21681163.2023.2204978"},"language":"en","primary_location":{"id":"doi:10.1080/21681163.2023.2204978","is_oa":false,"landing_page_url":"https://doi.org/10.1080/21681163.2023.2204978","pdf_url":null,"source":{"id":"https://openalex.org/S2764763012","display_name":"Computer Methods in Biomechanics and Biomedical Engineering Imaging & Visualization","issn_l":"2168-1163","issn":["2168-1163","2168-1171"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320547","host_organization_name":"Taylor & Francis","host_organization_lineage":["https://openalex.org/P4310320547"],"host_organization_lineage_names":["Taylor & Francis"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computer Methods in Biomechanics and Biomedical Engineering: Imaging & Visualization","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5108835331","display_name":"Luiz Souza","orcid":"https://orcid.org/0009-0000-9409-886X"},"institutions":[{"id":"https://openalex.org/I4210147816","display_name":"Instituto Federal do Maranh\u00e3o","ror":"https://ror.org/05rm1p636","country_code":"BR","type":"education","lineage":["https://openalex.org/I4210147816"]},{"id":"https://openalex.org/I126158947","display_name":"Universidade Federal da Bahia","ror":"https://ror.org/03k3p7647","country_code":"BR","type":"education","lineage":["https://openalex.org/I126158947"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Luiz Souza","raw_affiliation_strings":["Department of Science and Tecnology, Instituto Federal do Maranh\u00e3o, Graja\u00fa, Maranh\u00e3o, Brazil","Ivision Lab, Universidade Federal da Bahia, Bahia, Salvador, Brazil"],"affiliations":[{"raw_affiliation_string":"Department of Science and Tecnology, Instituto Federal do Maranh\u00e3o, Graja\u00fa, Maranh\u00e3o, Brazil","institution_ids":["https://openalex.org/I4210147816"]},{"raw_affiliation_string":"Ivision Lab, Universidade Federal da Bahia, Bahia, Salvador, Brazil","institution_ids":["https://openalex.org/I126158947"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101535001","display_name":"Jefferson Silva","orcid":"https://orcid.org/0000-0002-7541-5644"},"institutions":[{"id":"https://openalex.org/I126158947","display_name":"Universidade Federal da Bahia","ror":"https://ror.org/03k3p7647","country_code":"BR","type":"education","lineage":["https://openalex.org/I126158947"]},{"id":"https://openalex.org/I47327664","display_name":"Universidade Federal do Maranh\u00e3o","ror":"https://ror.org/043fhe951","country_code":"BR","type":"education","lineage":["https://openalex.org/I47327664"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Jefferson Silva","raw_affiliation_strings":["Department of Science and Tecnology, Universidade Federal do Maranh\u00e3o, Balsas, Maranh\u00e3o, Brazil","Ivision Lab, Universidade Federal da Bahia, Bahia, Salvador, Brazil"],"affiliations":[{"raw_affiliation_string":"Department of Science and Tecnology, Universidade Federal do Maranh\u00e3o, Balsas, Maranh\u00e3o, Brazil","institution_ids":["https://openalex.org/I47327664"]},{"raw_affiliation_string":"Ivision Lab, Universidade Federal da Bahia, Bahia, Salvador, Brazil","institution_ids":["https://openalex.org/I126158947"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030587769","display_name":"Paulo Chagas","orcid":"https://orcid.org/0000-0001-8120-3018"},"institutions":[{"id":"https://openalex.org/I126158947","display_name":"Universidade Federal da Bahia","ror":"https://ror.org/03k3p7647","country_code":"BR","type":"education","lineage":["https://openalex.org/I126158947"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Paulo Chagas","raw_affiliation_strings":["Ivision Lab, Universidade Federal da Bahia, Bahia, Salvador, Brazil"],"affiliations":[{"raw_affiliation_string":"Ivision Lab, Universidade Federal da Bahia, Bahia, Salvador, Brazil","institution_ids":["https://openalex.org/I126158947"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070243774","display_name":"\u00c2ngelo Duarte","orcid":"https://orcid.org/0000-0001-7446-1342"},"institutions":[{"id":"https://openalex.org/I21606457","display_name":"Universidade Estadual de Feira de Santana","ror":"https://ror.org/04ygk5j35","country_code":"BR","type":"education","lineage":["https://openalex.org/I21606457"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Angelo Duarte","raw_affiliation_strings":["Department of Technology, Universidade Estadual de Feira de Santana, Feira de Santana, Bahia, Brazil"],"affiliations":[{"raw_affiliation_string":"Department of Technology, Universidade Estadual de Feira de Santana, Feira de Santana, Bahia, Brazil","institution_ids":["https://openalex.org/I21606457"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5104028258","display_name":"Washington Lc-Dos Santos","orcid":null},"institutions":[{"id":"https://openalex.org/I52325","display_name":"Funda\u00e7\u00e3o Oswaldo Cruz","ror":"https://ror.org/04jhswv08","country_code":"BR","type":"facility","lineage":["https://openalex.org/I52325"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Washington LC-dos Santos","raw_affiliation_strings":["LAPEM, Funda\u00e7\u00e3o Oswaldo Cruz, Instituto Gon\u00e7alo Moniz, Salvador, Bahia, Brazil"],"affiliations":[{"raw_affiliation_string":"LAPEM, Funda\u00e7\u00e3o Oswaldo Cruz, Instituto Gon\u00e7alo Moniz, Salvador, Bahia, Brazil","institution_ids":["https://openalex.org/I52325"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5056386972","display_name":"Luciano Oliveira","orcid":"https://orcid.org/0000-0001-7183-8853"},"institutions":[{"id":"https://openalex.org/I126158947","display_name":"Universidade Federal da Bahia","ror":"https://ror.org/03k3p7647","country_code":"BR","type":"education","lineage":["https://openalex.org/I126158947"]}],"countries":["BR"],"is_corresponding":true,"raw_author_name":"Luciano Oliveira","raw_affiliation_strings":["Ivision Lab, Universidade Federal da Bahia, Bahia, Salvador, Brazil"],"affiliations":[{"raw_affiliation_string":"Ivision Lab, Universidade Federal da Bahia, Bahia, Salvador, Brazil","institution_ids":["https://openalex.org/I126158947"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5056386972"],"corresponding_institution_ids":["https://openalex.org/I126158947"],"apc_list":null,"apc_paid":null,"fwci":0.6993,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.74299739,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"11","issue":"5","first_page":"1996","last_page":"2005"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12874","display_name":"Digital Imaging for Blood Diseases","score":0.9959999918937683,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.7153732776641846},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6920163035392761},{"id":"https://openalex.org/keywords/data-set","display_name":"Data set","score":0.6752572655677795},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.6715744733810425},{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.6198113560676575},{"id":"https://openalex.org/keywords/stain","display_name":"Stain","score":0.5981544852256775},{"id":"https://openalex.org/keywords/transfer-of-learning","display_name":"Transfer of learning","score":0.5695716142654419},{"id":"https://openalex.org/keywords/test-set","display_name":"Test set","score":0.5276124477386475},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.5167626738548279},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.44762229919433594},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.43930569291114807},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.3253398835659027},{"id":"https://openalex.org/keywords/staining","display_name":"Staining","score":0.16025152802467346},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.13914236426353455}],"concepts":[{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.7153732776641846},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6920163035392761},{"id":"https://openalex.org/C58489278","wikidata":"https://www.wikidata.org/wiki/Q1172284","display_name":"Data set","level":2,"score":0.6752572655677795},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.6715744733810425},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.6198113560676575},{"id":"https://openalex.org/C2781294515","wikidata":"https://www.wikidata.org/wiki/Q2733470","display_name":"Stain","level":3,"score":0.5981544852256775},{"id":"https://openalex.org/C150899416","wikidata":"https://www.wikidata.org/wiki/Q1820378","display_name":"Transfer of learning","level":2,"score":0.5695716142654419},{"id":"https://openalex.org/C169903167","wikidata":"https://www.wikidata.org/wiki/Q3985153","display_name":"Test set","level":2,"score":0.5276124477386475},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.5167626738548279},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.44762229919433594},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.43930569291114807},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.3253398835659027},{"id":"https://openalex.org/C74864618","wikidata":"https://www.wikidata.org/wiki/Q2332446","display_name":"Staining","level":2,"score":0.16025152802467346},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.13914236426353455},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1080/21681163.2023.2204978","is_oa":false,"landing_page_url":"https://doi.org/10.1080/21681163.2023.2204978","pdf_url":null,"source":{"id":"https://openalex.org/S2764763012","display_name":"Computer Methods in Biomechanics and Biomedical Engineering Imaging & Visualization","issn_l":"2168-1163","issn":["2168-1163","2168-1171"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320547","host_organization_name":"Taylor & Francis","host_organization_lineage":["https://openalex.org/P4310320547"],"host_organization_lineage_names":["Taylor & Francis"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computer Methods in Biomechanics and Biomedical Engineering: Imaging & Visualization","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G836911422","display_name":null,"funder_award_id":"06779/2017","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"}],"funders":[{"id":"https://openalex.org/F4320322025","display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico","ror":"https://ror.org/03swz6y49"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":28,"referenced_works":["https://openalex.org/W1536729381","https://openalex.org/W1901129140","https://openalex.org/W1981503062","https://openalex.org/W2097432501","https://openalex.org/W2117539524","https://openalex.org/W2148278470","https://openalex.org/W2560674852","https://openalex.org/W2585204983","https://openalex.org/W2741128077","https://openalex.org/W2774320778","https://openalex.org/W2789277655","https://openalex.org/W2795587607","https://openalex.org/W2913954081","https://openalex.org/W2963896025","https://openalex.org/W2964309882","https://openalex.org/W2967566548","https://openalex.org/W2971487518","https://openalex.org/W3015788359","https://openalex.org/W3088226460","https://openalex.org/W3095093830","https://openalex.org/W3102660688","https://openalex.org/W3126550286","https://openalex.org/W3185007781","https://openalex.org/W4200134423","https://openalex.org/W4200395769","https://openalex.org/W4210567882","https://openalex.org/W4285074765","https://openalex.org/W4291011776"],"related_works":["https://openalex.org/W4206357785","https://openalex.org/W4281381188","https://openalex.org/W2951211570","https://openalex.org/W3192840557","https://openalex.org/W4375928479","https://openalex.org/W3167935049","https://openalex.org/W3023427754","https://openalex.org/W3131673289","https://openalex.org/W4393011546","https://openalex.org/W3198847674"],"abstract_inverted_index":{"Mice":[0],"and":[1,59,106,166,172],"humans":[2,60],"share":[3],"many":[4],"features":[5],"of":[6,17,47,52,70,87,102,184],"internal":[7],"organs.":[8],"Therefore,":[9],"mice":[10,58],"are":[11,43],"often":[12],"used":[13],"in":[14,24,35,61,73],"experimental":[15],"models":[16,80],"human":[18,74,108,138,174],"diseases.":[19],"Although":[20,177],"this":[21,141],"is":[22,27],"commonplace":[23],"medicine,":[25],"there":[26],"an":[28],"avenue":[29],"to":[30,32,181,192],"go":[31],"explore":[33],"it":[34,126,188],"computational":[36],"pathology,":[37],"where":[38],"digital":[39],"whole-slide":[40],"images":[41],"(WSIs)":[42],"the":[44,50,68,122,128,137,144,154,162,169,194],"main":[45],"objects":[46],"investigation.":[48],"Considering":[49],"absence":[51],"research":[53],"about":[54],"knowledge":[55],"transfer":[56],"between":[57],"machine":[62],"learning":[63,79],"modelling,":[64],"we":[65],"propose":[66],"investigating":[67],"possibility":[69],"segmenting":[71,185],"glomeruli":[72],"WSIs":[75],"by":[76],"training":[77],"deep":[78],"on":[81,97,118,132,136,147,161,168,197],"mouse":[82,104,123,163],"data":[83,99,124,139,164,175],"only.":[84],"A":[85],"set":[86,165],"semantic":[88],"segmenters":[89],"were":[90],"evaluated,":[91],"which":[92],"had":[93],"their":[94],"performance":[95],"assessed":[96],"two":[98],"sets":[100],"comprised":[101],"18":[103],"WSIs,":[105],"42":[107],"WSIs.":[109],"Results":[110],"demonstrated":[111],"that":[112],"U-Net":[113,150],"3+":[114,151],"achieved":[115,143],"superior":[116],"results":[117,156,196],"intra-data":[119],"set:":[120],"On":[121],"set,":[125,140],"reached":[127],"highest":[129,145],"average":[130,146],"score":[131],"HE-stained":[133],"images,":[134,187],"while":[135],"network":[142],"all":[148,178],"stains.":[149],"also":[152],"obtained":[153],"best":[155],"after":[157],"being":[158],"trained":[159],"only":[160],"predicting":[167],"entire":[170],"(train":[171],"test)":[173],"set.":[176],"networks":[179],"proved":[180],"be":[182],"capable":[183],"intra-stain":[186],"was":[189],"not":[190],"possible":[191],"confirm":[193],"same":[195],"inter-stain":[198],"ones.":[199]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}