{"id":"https://openalex.org/W4313559818","doi":"https://doi.org/10.1080/21681163.2022.2156393","title":"Rapid and robust endoscopic content area estimation: a lean GPU-based pipeline and curated benchmark dataset","display_name":"Rapid and robust endoscopic content area estimation: a lean GPU-based pipeline and curated benchmark dataset","publication_year":2023,"publication_date":"2023-01-04","ids":{"openalex":"https://openalex.org/W4313559818","doi":"https://doi.org/10.1080/21681163.2022.2156393","pmid":"https://pubmed.ncbi.nlm.nih.gov/38600897"},"language":"en","primary_location":{"id":"doi:10.1080/21681163.2022.2156393","is_oa":true,"landing_page_url":"https://doi.org/10.1080/21681163.2022.2156393","pdf_url":null,"source":{"id":"https://openalex.org/S2764763012","display_name":"Computer Methods in Biomechanics and Biomedical Engineering Imaging & Visualization","issn_l":"2168-1163","issn":["2168-1163","2168-1171"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320547","host_organization_name":"Taylor & Francis","host_organization_lineage":["https://openalex.org/P4310320547"],"host_organization_lineage_names":["Taylor & Francis"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computer Methods in Biomechanics and Biomedical Engineering: Imaging &amp; Visualization","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://doi.org/10.1080/21681163.2022.2156393","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5091328223","display_name":"Charlie Budd","orcid":null},"institutions":[{"id":"https://openalex.org/I183935753","display_name":"King's College London","ror":"https://ror.org/0220mzb33","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I183935753"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Charlie Budd","raw_affiliation_strings":["Surgical and Interventional Engineering, King\u2019s College London, UK","Surgical and Interventional Engineering, King's College London, UK"],"affiliations":[{"raw_affiliation_string":"Surgical and Interventional Engineering, King\u2019s College London, UK","institution_ids":["https://openalex.org/I183935753"]},{"raw_affiliation_string":"Surgical and Interventional Engineering, King's College London, UK","institution_ids":["https://openalex.org/I183935753"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075342719","display_name":"Luis C. Garc\u00eda-Peraza-Herrera","orcid":"https://orcid.org/0000-0002-7362-0353"},"institutions":[{"id":"https://openalex.org/I183935753","display_name":"King's College London","ror":"https://ror.org/0220mzb33","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I183935753"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Luis C. Garcia-Peraza Herrera","raw_affiliation_strings":["Surgical and Interventional Engineering, King\u2019s College London, UK","Surgical and Interventional Engineering, King's College London, UK"],"affiliations":[{"raw_affiliation_string":"Surgical and Interventional Engineering, King\u2019s College London, UK","institution_ids":["https://openalex.org/I183935753"]},{"raw_affiliation_string":"Surgical and Interventional Engineering, King's College London, UK","institution_ids":["https://openalex.org/I183935753"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045738123","display_name":"Martin Huber","orcid":"https://orcid.org/0000-0003-4603-6773"},"institutions":[{"id":"https://openalex.org/I183935753","display_name":"King's College London","ror":"https://ror.org/0220mzb33","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I183935753"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Martin Huber","raw_affiliation_strings":["Surgical and Interventional Engineering, King\u2019s College London, UK","Surgical and Interventional Engineering, King's College London, UK"],"affiliations":[{"raw_affiliation_string":"Surgical and Interventional Engineering, King\u2019s College London, UK","institution_ids":["https://openalex.org/I183935753"]},{"raw_affiliation_string":"Surgical and Interventional Engineering, King's College London, UK","institution_ids":["https://openalex.org/I183935753"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082106258","display_name":"S\u00e9bastien Ourselin","orcid":"https://orcid.org/0000-0002-5694-5340"},"institutions":[{"id":"https://openalex.org/I183935753","display_name":"King's College London","ror":"https://ror.org/0220mzb33","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I183935753"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Sebastien Ourselin","raw_affiliation_strings":["Hypervision Surgical Ltd, London, UK","Surgical and Interventional Engineering, King\u2019s College London, UK","Surgical and Interventional Engineering, King's College London, UK"],"affiliations":[{"raw_affiliation_string":"Hypervision Surgical Ltd, London, UK","institution_ids":[]},{"raw_affiliation_string":"Surgical and Interventional Engineering, King\u2019s College London, UK","institution_ids":["https://openalex.org/I183935753"]},{"raw_affiliation_string":"Surgical and Interventional Engineering, King's College London, UK","institution_ids":["https://openalex.org/I183935753"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5028279799","display_name":"Tom Vercauteren","orcid":"https://orcid.org/0000-0003-1794-0456"},"institutions":[{"id":"https://openalex.org/I183935753","display_name":"King's College London","ror":"https://ror.org/0220mzb33","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I183935753"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Tom Vercauteren","raw_affiliation_strings":["Hypervision Surgical Ltd, London, UK","Surgical and Interventional Engineering, King\u2019s College London, UK","Surgical and Interventional Engineering, King's College London, UK"],"affiliations":[{"raw_affiliation_string":"Hypervision Surgical Ltd, London, UK","institution_ids":[]},{"raw_affiliation_string":"Surgical and Interventional Engineering, King\u2019s College London, UK","institution_ids":["https://openalex.org/I183935753"]},{"raw_affiliation_string":"Surgical and Interventional Engineering, King's College London, UK","institution_ids":["https://openalex.org/I183935753"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5091328223"],"corresponding_institution_ids":["https://openalex.org/I183935753"],"apc_list":null,"apc_paid":null,"fwci":0.832,"has_fulltext":true,"cited_by_count":7,"citation_normalized_percentile":{"value":0.73687644,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"11","issue":"4","first_page":"1215","last_page":"1224"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10824","display_name":"Image Retrieval and Classification Techniques","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10824","display_name":"Image Retrieval and Classification Techniques","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10552","display_name":"Colorectal Cancer Screening and Detection","score":0.9933000206947327,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.9886000156402588,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/javascript","display_name":"JavaScript","score":0.8048192858695984},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7519527673721313},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.7402847409248352},{"id":"https://openalex.org/keywords/zoom","display_name":"Zoom","score":0.7038950324058533},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.6592888236045837},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.513981282711029},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics (images)","score":0.4856935441493988},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.192926287651062},{"id":"https://openalex.org/keywords/cartography","display_name":"Cartography","score":0.08217442035675049},{"id":"https://openalex.org/keywords/geology","display_name":"Geology","score":0.07590523362159729}],"concepts":[{"id":"https://openalex.org/C544833334","wikidata":"https://www.wikidata.org/wiki/Q2005","display_name":"JavaScript","level":2,"score":0.8048192858695984},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7519527673721313},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.7402847409248352},{"id":"https://openalex.org/C124913957","wikidata":"https://www.wikidata.org/wiki/Q1232548","display_name":"Zoom","level":3,"score":0.7038950324058533},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.6592888236045837},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.513981282711029},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.4856935441493988},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.192926287651062},{"id":"https://openalex.org/C58640448","wikidata":"https://www.wikidata.org/wiki/Q42515","display_name":"Cartography","level":1,"score":0.08217442035675049},{"id":"https://openalex.org/C127313418","wikidata":"https://www.wikidata.org/wiki/Q1069","display_name":"Geology","level":0,"score":0.07590523362159729},{"id":"https://openalex.org/C78762247","wikidata":"https://www.wikidata.org/wiki/Q1273174","display_name":"Petroleum engineering","level":1,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C15336307","wikidata":"https://www.wikidata.org/wiki/Q1766051","display_name":"Lens (geology)","level":2,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1080/21681163.2022.2156393","is_oa":true,"landing_page_url":"https://doi.org/10.1080/21681163.2022.2156393","pdf_url":null,"source":{"id":"https://openalex.org/S2764763012","display_name":"Computer Methods in Biomechanics and Biomedical Engineering Imaging & Visualization","issn_l":"2168-1163","issn":["2168-1163","2168-1171"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320547","host_organization_name":"Taylor & Francis","host_organization_lineage":["https://openalex.org/P4310320547"],"host_organization_lineage_names":["Taylor & Francis"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computer Methods in Biomechanics and Biomedical Engineering: Imaging &amp; Visualization","raw_type":"journal-article"},{"id":"pmid:38600897","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38600897","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computer methods in biomechanics and biomedical engineering. Imaging & visualization","raw_type":null},{"id":"pmh:oai:lirias2repo.kuleuven.be:20.500.12942/714661","is_oa":true,"landing_page_url":"https://lirias.kuleuven.be/handle/20.500.12942/714661","pdf_url":"https://lirias.kuleuven.be/retrieve/0793806b-e3bd-453f-a037-eab7d32705a0","source":{"id":"https://openalex.org/S4306401954","display_name":"Lirias (KU Leuven)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I99464096","host_organization_name":"KU Leuven","host_organization_lineage":["https://openalex.org/I99464096"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Computer Methods in Biomechanics and Biomedical Engineering-Imaging and Visualization, vol. 11 (4), (1215-1224)","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:pubmedcentral.nih.gov:7615255","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7615255","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC7615255/pdf/EMS177365.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Comput Methods Biomech Biomed Eng Imaging Vis","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1080/21681163.2022.2156393","is_oa":true,"landing_page_url":"https://doi.org/10.1080/21681163.2022.2156393","pdf_url":null,"source":{"id":"https://openalex.org/S2764763012","display_name":"Computer Methods in Biomechanics and Biomedical Engineering Imaging & Visualization","issn_l":"2168-1163","issn":["2168-1163","2168-1171"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320547","host_organization_name":"Taylor & Francis","host_organization_lineage":["https://openalex.org/P4310320547"],"host_organization_lineage_names":["Taylor & Francis"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computer Methods in Biomechanics and Biomedical Engineering: Imaging &amp; Visualization","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","score":0.46000000834465027,"id":"https://metadata.un.org/sdg/9"}],"awards":[{"id":"https://openalex.org/G1190480411","display_name":null,"funder_award_id":"NS/A000049/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G4215281196","display_name":null,"funder_award_id":"WT203148/Z/16/Z","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G5232556771","display_name":null,"funder_award_id":"101016985","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G5404998627","display_name":null,"funder_award_id":"Chair","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G7608866393","display_name":null,"funder_award_id":"WT101957","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G7746801374","display_name":null,"funder_award_id":"NS/A000027/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G8318064016","display_name":null,"funder_award_id":"Horizon","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G8452545418","display_name":null,"funder_award_id":"unknown","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G8787748348","display_name":null,"funder_award_id":"203148/Z/16/Z","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320334627","display_name":"Engineering and Physical Sciences Research Council","ror":"https://ror.org/0439y7842"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":11,"referenced_works":["https://openalex.org/W845365781","https://openalex.org/W1901129140","https://openalex.org/W2026673180","https://openalex.org/W2085261163","https://openalex.org/W2114224287","https://openalex.org/W2160754664","https://openalex.org/W2266464013","https://openalex.org/W3203666321","https://openalex.org/W4205330793","https://openalex.org/W4211142585","https://openalex.org/W4223560790"],"related_works":["https://openalex.org/W2788595494","https://openalex.org/W2461078469","https://openalex.org/W2378211422","https://openalex.org/W123790205","https://openalex.org/W2085515337","https://openalex.org/W2244676099","https://openalex.org/W3087706721","https://openalex.org/W4287664162","https://openalex.org/W3172556642","https://openalex.org/W2951187577"],"abstract_inverted_index":{"Endoscopic":[0],"content":[1,24,115,131],"area":[2,7,25,116],"refers":[3],"to":[4,113],"the":[5,10,23,39,43,59,63,79,143],"informative":[6],"enclosed":[8],"by":[9,104],"dark,":[11],"non-informative,":[12],"border":[13],"regions":[14],"present":[15,122],"in":[16,30,78,172],"most":[17],"endoscopic":[18,31],"footage.":[19],"The":[20,53,100],"estimation":[21,50],"of":[22,42,55,65,88,126,136,149,174],"is":[26],"a":[27,66,75,89,123,134,164],"common":[28,67],"task":[29,72],"image":[32],"processing":[33],"and":[34,97,109,129,146,168,184],"computer":[35],"vision":[36],"pipelines.":[37],"Despite":[38],"apparent":[40],"simplicity":[41],"problem,":[44],"several":[45],"factors":[46],"make":[47],"reliable":[48],"real-time":[49],"surprisingly":[51],"challenging.":[52],"lack":[54,64],"rigorous":[56],"investigation":[57],"into":[58],"topic":[60],"combined":[61],"with":[62,163],"benchmark":[68],"dataset":[69,125],"for":[70],"this":[71,82],"has":[73,152],"been":[74,153],"long-lasting":[76],"issue":[77],"field.":[80],"In":[81],"paper,":[83],"we":[84],"propose":[85],"two":[86,101],"variants":[87,102],"lean":[90],"GPU-based":[91],"computational":[92,185],"pipeline":[93],"combining":[94],"edge":[95,117],"detection":[96],"circle":[98],"fitting.":[99],"differ":[103],"relying":[105],"on":[106],"handcrafted":[107],"features,":[108],"learned":[110],"features":[111],"respectively":[112],"extract":[114],"point":[118],"candidates.":[119],"We":[120,158],"also":[121],"first-of-its-kind":[124],"manually":[127],"annotated":[128],"pseudo-labelled":[130],"areas":[132],"across":[133],"range":[135],"surgical":[137],"indications.":[138],"To":[139],"encourage":[140],"further":[141],"developments,":[142],"curated":[144],"dataset,":[145],"an":[147],"implementation":[148],"both":[150,175],"algorithms,":[151],"made":[154],"public":[155],"(https://doi.org/10.7303/syn32148000,":[156],"https://github.com/charliebudd/torch-content-area).":[157],"compare":[159],"our":[160],"proposed":[161],"algorithm":[162],"state-of-the-art":[165],"U-Net-based":[166],"approach":[167],"demonstrate":[169],"significant":[170],"improvement":[171],"terms":[173],"accuracy":[176],"(Hausdorff":[177],"distance:":[178],"6.3":[179],"px":[180],"versus":[181,193],"118.1":[182],"px)":[183],"time":[186],"(Average":[187],"runtime":[188],"per":[189],"frame:":[190],"0.13":[191],"ms":[192],"11.2":[194],"ms).":[195]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":4}],"updated_date":"2026-04-16T15:07:20.185449","created_date":"2025-10-10T00:00:00"}
