{"id":"https://openalex.org/W2944628648","doi":"https://doi.org/10.1080/10618600.2020.1754226","title":"Massive Parallelization Boosts Big Bayesian Multidimensional Scaling","display_name":"Massive Parallelization Boosts Big Bayesian Multidimensional Scaling","publication_year":2020,"publication_date":"2020-05-05","ids":{"openalex":"https://openalex.org/W2944628648","doi":"https://doi.org/10.1080/10618600.2020.1754226","mag":"2944628648","pmid":"https://pubmed.ncbi.nlm.nih.gov/34168419"},"language":"en","primary_location":{"id":"doi:10.1080/10618600.2020.1754226","is_oa":false,"landing_page_url":"https://doi.org/10.1080/10618600.2020.1754226","pdf_url":null,"source":{"id":"https://openalex.org/S76159266","display_name":"Journal of Computational and Graphical Statistics","issn_l":"1061-8600","issn":["1061-8600","1537-2715"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320547","host_organization_name":"Taylor & Francis","host_organization_lineage":["https://openalex.org/P4310320547"],"host_organization_lineage_names":["Taylor & Francis"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computational and Graphical Statistics","raw_type":"journal-article"},"type":"article","indexed_in":["arxiv","crossref","datacite","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/1905.04582","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5039106878","display_name":"Andrew J. Holbrook","orcid":"https://orcid.org/0000-0002-3558-200X"},"institutions":[{"id":"https://openalex.org/I161318765","display_name":"University of California, Los Angeles","ror":"https://ror.org/046rm7j60","country_code":"US","type":"education","lineage":["https://openalex.org/I161318765"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Andrew J. Holbrook","raw_affiliation_strings":["Department of Biostatistics, University of California, Los Angeles, Los Angeles, CA","Department of Biostatistics University of California\u2013Los Angeles"],"raw_orcid":"https://orcid.org/0000-0002-3558-200X","affiliations":[{"raw_affiliation_string":"Department of Biostatistics, University of California, Los Angeles, Los Angeles, CA","institution_ids":["https://openalex.org/I161318765"]},{"raw_affiliation_string":"Department of Biostatistics University of California\u2013Los Angeles","institution_ids":["https://openalex.org/I161318765"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039280845","display_name":"Philippe Lemey","orcid":"https://orcid.org/0000-0003-2826-5353"},"institutions":[{"id":"https://openalex.org/I24156275","display_name":"Rega Institute for Medical Research","ror":"https://ror.org/03w5j8p12","country_code":"BE","type":"facility","lineage":["https://openalex.org/I24156275"]},{"id":"https://openalex.org/I99464096","display_name":"KU Leuven","ror":"https://ror.org/05f950310","country_code":"BE","type":"education","lineage":["https://openalex.org/I99464096"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Philippe Lemey","raw_affiliation_strings":["Department of Microbiology, Immunology and Transplantation, Rega Institute, KU Leuven, Leuven, Belgium","Department of Microbiology, Immunology and Transplantation, Rega Institute, KU Leuven"],"raw_orcid":"https://orcid.org/0000-0003-2826-5353","affiliations":[{"raw_affiliation_string":"Department of Microbiology, Immunology and Transplantation, Rega Institute, KU Leuven, Leuven, Belgium","institution_ids":["https://openalex.org/I24156275","https://openalex.org/I99464096"]},{"raw_affiliation_string":"Department of Microbiology, Immunology and Transplantation, Rega Institute, KU Leuven","institution_ids":["https://openalex.org/I24156275","https://openalex.org/I99464096"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056792309","display_name":"Guy Baele","orcid":"https://orcid.org/0000-0002-1915-7732"},"institutions":[{"id":"https://openalex.org/I24156275","display_name":"Rega Institute for Medical Research","ror":"https://ror.org/03w5j8p12","country_code":"BE","type":"facility","lineage":["https://openalex.org/I24156275"]},{"id":"https://openalex.org/I99464096","display_name":"KU Leuven","ror":"https://ror.org/05f950310","country_code":"BE","type":"education","lineage":["https://openalex.org/I99464096"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Guy Baele","raw_affiliation_strings":["Department of Microbiology, Immunology and Transplantation, Rega Institute, KU Leuven, Leuven, Belgium","Department of Microbiology, Immunology and Transplantation, Rega Institute, KU Leuven"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Microbiology, Immunology and Transplantation, Rega Institute, KU Leuven, Leuven, Belgium","institution_ids":["https://openalex.org/I24156275","https://openalex.org/I99464096"]},{"raw_affiliation_string":"Department of Microbiology, Immunology and Transplantation, Rega Institute, KU Leuven","institution_ids":["https://openalex.org/I24156275","https://openalex.org/I99464096"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066369383","display_name":"Simon Dellicour","orcid":"https://orcid.org/0000-0001-9558-1052"},"institutions":[{"id":"https://openalex.org/I24156275","display_name":"Rega Institute for Medical Research","ror":"https://ror.org/03w5j8p12","country_code":"BE","type":"facility","lineage":["https://openalex.org/I24156275"]},{"id":"https://openalex.org/I99464096","display_name":"KU Leuven","ror":"https://ror.org/05f950310","country_code":"BE","type":"education","lineage":["https://openalex.org/I99464096"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Simon Dellicour","raw_affiliation_strings":["Department of Microbiology, Immunology and Transplantation, Rega Institute, KU Leuven, Leuven, Belgium","Department of Microbiology, Immunology and Transplantation, Rega Institute, KU Leuven"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Microbiology, Immunology and Transplantation, Rega Institute, KU Leuven, Leuven, Belgium","institution_ids":["https://openalex.org/I24156275","https://openalex.org/I99464096"]},{"raw_affiliation_string":"Department of Microbiology, Immunology and Transplantation, Rega Institute, KU Leuven","institution_ids":["https://openalex.org/I24156275","https://openalex.org/I99464096"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091068467","display_name":"Dirk Brockmann","orcid":"https://orcid.org/0000-0001-5708-2922"},"institutions":[{"id":"https://openalex.org/I192389796","display_name":"Cal Poly Humboldt","ror":"https://ror.org/02qt0xs84","country_code":"US","type":"education","lineage":["https://openalex.org/I192389796"]},{"id":"https://openalex.org/I39343248","display_name":"Humboldt-Universit\u00e4t zu Berlin","ror":"https://ror.org/01hcx6992","country_code":"DE","type":"education","lineage":["https://openalex.org/I39343248"]}],"countries":["DE","US"],"is_corresponding":false,"raw_author_name":"Dirk Brockmann","raw_affiliation_strings":["Institute for Theoretical Biology, Humboldt University Berlin, Berlin, Germany","Institute for Theoretical Biology, Humboldt-University Berlin"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Theoretical Biology, Humboldt University Berlin, Berlin, Germany","institution_ids":["https://openalex.org/I39343248"]},{"raw_affiliation_string":"Institute for Theoretical Biology, Humboldt-University Berlin","institution_ids":["https://openalex.org/I192389796"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083534383","display_name":"Andrew Rambaut","orcid":"https://orcid.org/0000-0003-4337-3707"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I874236823","display_name":"Fogarty International Center","ror":"https://ror.org/02xey9a22","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I874236823"]},{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["GB","US"],"is_corresponding":false,"raw_author_name":"Andrew Rambaut","raw_affiliation_strings":["Fogarty International Center, National Institutes of Health, Bethesda, MD","Institute of Evolutionary Biology, University of Edinburgh, Edinburgh, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Fogarty International Center, National Institutes of Health, Bethesda, MD","institution_ids":["https://openalex.org/I1299303238","https://openalex.org/I874236823"]},{"raw_affiliation_string":"Institute of Evolutionary Biology, University of Edinburgh, Edinburgh, UK","institution_ids":["https://openalex.org/I98677209"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5039905606","display_name":"Marc A. Suchard","orcid":"https://orcid.org/0000-0001-9818-479X"},"institutions":[{"id":"https://openalex.org/I161318765","display_name":"University of California, Los Angeles","ror":"https://ror.org/046rm7j60","country_code":"US","type":"education","lineage":["https://openalex.org/I161318765"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Marc A. Suchard","raw_affiliation_strings":["Department of Biomathematics, University of California, Los Angeles, Los Angeles, CA","Department of Biostatistics, University of California, Los Angeles, Los Angeles, CA","Department of Human Genetics, University of California, Los Angeles, Los Angeles, CA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomathematics, University of California, Los Angeles, Los Angeles, CA","institution_ids":["https://openalex.org/I161318765"]},{"raw_affiliation_string":"Department of Biostatistics, University of California, Los Angeles, Los Angeles, CA","institution_ids":["https://openalex.org/I161318765"]},{"raw_affiliation_string":"Department of Human Genetics, University of California, Los Angeles, Los Angeles, CA","institution_ids":["https://openalex.org/I161318765"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5039106878"],"corresponding_institution_ids":["https://openalex.org/I161318765"],"apc_list":null,"apc_paid":null,"fwci":0.274,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.53981901,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"30","issue":"1","first_page":"11","last_page":"24"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10167","display_name":"Influenza Virus Research Studies","score":0.9797999858856201,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10167","display_name":"Influenza Virus Research Studies","score":0.9797999858856201,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.977400004863739,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11512","display_name":"Anomaly Detection Techniques and Applications","score":0.9760000109672546,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6948133111000061},{"id":"https://openalex.org/keywords/bayesian-probability","display_name":"Bayesian probability","score":0.5330010652542114},{"id":"https://openalex.org/keywords/computer-cluster","display_name":"Computer cluster","score":0.46486717462539673},{"id":"https://openalex.org/keywords/bayesian-inference","display_name":"Bayesian inference","score":0.44161492586135864},{"id":"https://openalex.org/keywords/bayes-theorem","display_name":"Bayes' theorem","score":0.4390895962715149},{"id":"https://openalex.org/keywords/supercomputer","display_name":"Supercomputer","score":0.43292269110679626},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.32157421112060547},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.3138936161994934},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2627633213996887},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.13770663738250732}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6948133111000061},{"id":"https://openalex.org/C107673813","wikidata":"https://www.wikidata.org/wiki/Q812534","display_name":"Bayesian probability","level":2,"score":0.5330010652542114},{"id":"https://openalex.org/C29140674","wikidata":"https://www.wikidata.org/wiki/Q206637","display_name":"Computer cluster","level":2,"score":0.46486717462539673},{"id":"https://openalex.org/C160234255","wikidata":"https://www.wikidata.org/wiki/Q812535","display_name":"Bayesian inference","level":3,"score":0.44161492586135864},{"id":"https://openalex.org/C207201462","wikidata":"https://www.wikidata.org/wiki/Q182505","display_name":"Bayes' theorem","level":3,"score":0.4390895962715149},{"id":"https://openalex.org/C83283714","wikidata":"https://www.wikidata.org/wiki/Q121117","display_name":"Supercomputer","level":2,"score":0.43292269110679626},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.32157421112060547},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.3138936161994934},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2627633213996887},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.13770663738250732}],"mesh":[],"locations_count":9,"locations":[{"id":"doi:10.1080/10618600.2020.1754226","is_oa":false,"landing_page_url":"https://doi.org/10.1080/10618600.2020.1754226","pdf_url":null,"source":{"id":"https://openalex.org/S76159266","display_name":"Journal of Computational and Graphical Statistics","issn_l":"1061-8600","issn":["1061-8600","1537-2715"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320547","host_organization_name":"Taylor & Francis","host_organization_lineage":["https://openalex.org/P4310320547"],"host_organization_lineage_names":["Taylor & Francis"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computational and Graphical Statistics","raw_type":"journal-article"},{"id":"pmid:34168419","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34168419","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of computational and graphical statistics : a joint publication of American Statistical Association, Institute of Mathematical Statistics, Interface Foundation of North America","raw_type":null},{"id":"pmh:oai:arXiv.org:1905.04582","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1905.04582","pdf_url":"https://arxiv.org/pdf/1905.04582","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":null},{"id":"mag:2944628648","is_oa":true,"landing_page_url":"http://export.arxiv.org/pdf/1905.04582","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"arXiv (Cornell University)","raw_type":null},{"id":"pmh:ark:/13030/qt0wv8d79z","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:escholarship.org:ark:/13030/qt0wv8d79z","is_oa":false,"landing_page_url":"https://escholarship.org/uc/item/0wv8d79z","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Computational and Graphical Statistics, vol 30, iss 1","raw_type":"article"},{"id":"pmh:oai:lirias2repo.kuleuven.be:123456789/658205","is_oa":true,"landing_page_url":"https://lirias.kuleuven.be/bitstream/123456789/658205/2/Massive%20Parallelization%20Boosts%20Big%20Bayesian%20Multidimensional%20Scaling.pdf","pdf_url":null,"source":{"id":"https://openalex.org/S7407055369","display_name":"Lirias","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal Of Computational And Graphical Statistics, vol. 30 (1), (11-24)","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pubmedcentral.nih.gov:8218718","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8218718","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Comput Graph Stat","raw_type":"Text"},{"id":"doi:10.48550/arxiv.1905.04582","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.1905.04582","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"Preprint"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:1905.04582","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1905.04582","pdf_url":"https://arxiv.org/pdf/1905.04582","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":null},"sustainable_development_goals":[{"score":0.8100000023841858,"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3"}],"awards":[{"id":"https://openalex.org/G2555986038","display_name":null,"funder_award_id":"K25 AI153816","funder_id":"https://openalex.org/F4320337355","funder_display_name":"National Institute of Allergy and Infectious Diseases"},{"id":"https://openalex.org/G3262302131","display_name":null,"funder_award_id":"R01 AI107034","funder_id":"https://openalex.org/F4320337355","funder_display_name":"National Institute of Allergy and Infectious Diseases"},{"id":"https://openalex.org/G4695743940","display_name":null,"funder_award_id":"206298/Z/17/Z","funder_id":"https://openalex.org/F4320311904","funder_display_name":"Wellcome Trust"},{"id":"https://openalex.org/G6655456318","display_name":null,"funder_award_id":"98/Z/17/Z. PL","funder_id":"https://openalex.org/F4320311904","funder_display_name":"Wellcome Trust"},{"id":"https://openalex.org/G8512275047","display_name":null,"funder_award_id":"22-ReservoirDOCS","funder_id":"https://openalex.org/F4320334678","funder_display_name":"European Research Council"},{"id":"https://openalex.org/G950618099","display_name":null,"funder_award_id":"R01 HG006139","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320311904","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08"},{"id":"https://openalex.org/F4320321800","display_name":"Nederlandse Organisatie voor Wetenschappelijk Onderzoek","ror":"https://ror.org/04jsz6e67"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320334678","display_name":"European Research Council","ror":"https://ror.org/0472cxd90"},{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"},{"id":"https://openalex.org/F4320337355","display_name":"National Institute of Allergy and Infectious Diseases","ror":"https://ror.org/043z4tv69"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":63,"referenced_works":["https://openalex.org/W57462620","https://openalex.org/W139757862","https://openalex.org/W1504702575","https://openalex.org/W1607381855","https://openalex.org/W1981251392","https://openalex.org/W1991288592","https://openalex.org/W2003064123","https://openalex.org/W2003459588","https://openalex.org/W2009596137","https://openalex.org/W2010207606","https://openalex.org/W2013410948","https://openalex.org/W2025733515","https://openalex.org/W2045656233","https://openalex.org/W2048328788","https://openalex.org/W2057434754","https://openalex.org/W2058522416","https://openalex.org/W2059448777","https://openalex.org/W2064179240","https://openalex.org/W2066459332","https://openalex.org/W2088267428","https://openalex.org/W2094206246","https://openalex.org/W2098232873","https://openalex.org/W2098793851","https://openalex.org/W2109343155","https://openalex.org/W2110401950","https://openalex.org/W2114659646","https://openalex.org/W2124842723","https://openalex.org/W2128718394","https://openalex.org/W2136485386","https://openalex.org/W2139166200","https://openalex.org/W2140318660","https://openalex.org/W2147660889","https://openalex.org/W2152825437","https://openalex.org/W2156094048","https://openalex.org/W2158189516","https://openalex.org/W2159325249","https://openalex.org/W2160634817","https://openalex.org/W2166925272","https://openalex.org/W2167241647","https://openalex.org/W2169657274","https://openalex.org/W2169981472","https://openalex.org/W2173476375","https://openalex.org/W2203714058","https://openalex.org/W2254715784","https://openalex.org/W2265753182","https://openalex.org/W2478027467","https://openalex.org/W2565819431","https://openalex.org/W2567289819","https://openalex.org/W2587125758","https://openalex.org/W2607268271","https://openalex.org/W2726096180","https://openalex.org/W2768847291","https://openalex.org/W2807308836","https://openalex.org/W2889333038","https://openalex.org/W2941807936","https://openalex.org/W2954040150","https://openalex.org/W2963218199","https://openalex.org/W2963219621","https://openalex.org/W3101511497","https://openalex.org/W3104433300","https://openalex.org/W4210681352","https://openalex.org/W4248681815","https://openalex.org/W6691839725"],"related_works":["https://openalex.org/W3004904046","https://openalex.org/W2964001391","https://openalex.org/W1979320131","https://openalex.org/W2559572207","https://openalex.org/W2952757958","https://openalex.org/W2945309517","https://openalex.org/W226306790","https://openalex.org/W2948860789","https://openalex.org/W2113671562","https://openalex.org/W2952724960","https://openalex.org/W1534540754","https://openalex.org/W3080586396","https://openalex.org/W2799211855","https://openalex.org/W2289163516","https://openalex.org/W2326200372","https://openalex.org/W2064693963","https://openalex.org/W3112388715","https://openalex.org/W2908394149","https://openalex.org/W3010857336","https://openalex.org/W2183144394"],"abstract_inverted_index":{"Big":[0],"Bayes":[1],"is":[2],"the":[3,16,58,83,118,134,150,169,177],"computationally":[4],"intensive":[5],"co-application":[6],"of":[7,18,60,152,168,225],"big":[8,107],"data":[9,108],"and":[10,24,77,100,141,180,208,212,216],"large,":[11],"expressive":[12],"Bayesian":[13,31,103,114],"models":[14],"for":[15,164],"analysis":[17],"complex":[19],"phenomena":[20],"in":[21,57],"scientific":[22],"inference":[23],"statistical":[25],"learning.":[26],"Standing":[27],"as":[28],"an":[29,203,220],"example,":[30],"multidimensional":[32],"scaling":[33],"(MDS)":[34],"can":[35,91],"help":[36],"scientists":[37],"learn":[38,181],"viral":[39,139,159],"trajectories":[40],"through":[41,67],"space-time,":[42],"but":[43],"its":[44,48,190],"computational":[45],"burden":[46],"prevents":[47],"wider":[49],"use.":[50],"Crucial":[51],"MDS":[52,84,104,115,178],"model":[53,85,179],"calculations":[54,99],"scale":[55],"quadratically":[56],"number":[59,151],"observations.":[61],"We":[62,136],"partially":[63],"mitigate":[64],"this":[65],"limitation":[66],"massive":[68],"parallelization":[69],"using":[70,86],"multi-core":[71],"central":[72],"processing":[73,79],"units,":[74],"instruction-level":[75],"vectorization":[76],"graphics":[78],"units":[80],"(GPUs).":[81],"Fitting":[82],"Hamiltonian":[87],"Monte":[88],"Carlo,":[89],"GPUs":[90],"deliver":[92],"more":[93],"than":[94],"100-fold":[95],"speedups":[96],"over":[97],"serial":[98],"thus":[101],"extend":[102],"to":[105,116,131,176,194],"a":[106,173],"setting.":[109],"To":[110,162],"illustrate,":[111],"we":[112,171,200],"employ":[113],"infer":[117],"rate":[119],"at":[120,231],"which":[121],"different":[122],"seasonal":[123,196],"influenza":[124,197],"virus":[125],"subtypes":[126],"use":[127],"worldwide":[128],"air":[129],"traffic":[130],"spread":[132],"around":[133],"globe.":[135],"examine":[137],"5392":[138],"sequences":[140],"their":[142],"associated":[143],"14":[144],"million":[145],"pairwise":[146],"distances":[147],"arising":[148],"from":[149],"commercial":[153],"airline":[154],"seats":[155],"per":[156],"year":[157],"between":[158],"sampling":[160],"locations.":[161],"adjust":[163],"shared":[165],"evolutionary":[166],"history":[167],"viruses,":[170],"implement":[172],"phylogenetic":[174],"extension":[175],"that":[182,228],"subtype":[183],"H3N2":[184],"spreads":[185],"most":[186],"effectively,":[187],"consistent":[188],"with":[189,219],"epidemic":[191],"success":[192],"relative":[193],"other":[195],"subtypes.":[198],"Finally,":[199],"provide":[201],"MassiveMDS,":[202],"open-source,":[204],"stand-alone":[205],"C++":[206],"library":[207],"rudimentary":[209],"R":[210],"package,":[211],"discuss":[213],"program":[214],"design":[215],"high-level":[217],"implementation":[218],"emphasis":[221],"on":[222],"important":[223],"aspects":[224],"computing":[226],"architecture":[227],"become":[229],"relevant":[230],"scale.":[232]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
