{"id":"https://openalex.org/W4399578262","doi":"https://doi.org/10.1080/09540091.2024.2365334","title":"TfrAdmCov: a robust transformer encoder based model with Adam optimizer algorithm for COVID-19 mutation prediction","display_name":"TfrAdmCov: a robust transformer encoder based model with Adam optimizer algorithm for COVID-19 mutation prediction","publication_year":2024,"publication_date":"2024-06-12","ids":{"openalex":"https://openalex.org/W4399578262","doi":"https://doi.org/10.1080/09540091.2024.2365334"},"language":"en","primary_location":{"id":"doi:10.1080/09540091.2024.2365334","is_oa":true,"landing_page_url":"https://doi.org/10.1080/09540091.2024.2365334","pdf_url":"https://www.tandfonline.com/doi/pdf/10.1080/09540091.2024.2365334?needAccess=true","source":{"id":"https://openalex.org/S4210188800","display_name":"Connection Science","issn_l":"0954-0091","issn":["0954-0091","1360-0494"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320547","host_organization_name":"Taylor & Francis","host_organization_lineage":["https://openalex.org/P4310320547"],"host_organization_lineage_names":["Taylor & Francis"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Connection Science","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.tandfonline.com/doi/pdf/10.1080/09540091.2024.2365334?needAccess=true","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5034943146","display_name":"Mehmet Burukanl\u0131","orcid":"https://orcid.org/0000-0003-4459-0455"},"institutions":[{"id":"https://openalex.org/I103703290","display_name":"Sakarya University","ror":"https://ror.org/04ttnw109","country_code":"TR","type":"education","lineage":["https://openalex.org/I103703290"]},{"id":"https://openalex.org/I41055640","display_name":"Bitlis Eren University","ror":"https://ror.org/00mm4ys28","country_code":"TR","type":"education","lineage":["https://openalex.org/I41055640"]}],"countries":["TR"],"is_corresponding":true,"raw_author_name":"Mehmet Burukanli","raw_affiliation_strings":["Faculty of Computer and Information Sciences, Department of Computer Engineering, Sakarya University, Sakarya, Turkey","Rectorate, Department of Common Courses, Bitlis Eren University, Bitlis, Turkey"],"raw_orcid":"https://orcid.org/0000-0003-4459-0455","affiliations":[{"raw_affiliation_string":"Faculty of Computer and Information Sciences, Department of Computer Engineering, Sakarya University, Sakarya, Turkey","institution_ids":["https://openalex.org/I103703290"]},{"raw_affiliation_string":"Rectorate, Department of Common Courses, Bitlis Eren University, Bitlis, Turkey","institution_ids":["https://openalex.org/I41055640"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5022944830","display_name":"Nejat Yumu\u015fak","orcid":"https://orcid.org/0000-0001-5005-8604"},"institutions":[{"id":"https://openalex.org/I103703290","display_name":"Sakarya University","ror":"https://ror.org/04ttnw109","country_code":"TR","type":"education","lineage":["https://openalex.org/I103703290"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"Nejat Yumu\u015fak","raw_affiliation_strings":["Faculty of Computer and Information Sciences, Department of Computer Engineering, Sakarya University, Sakarya, Turkey"],"raw_orcid":"https://orcid.org/0000-0001-5005-8604","affiliations":[{"raw_affiliation_string":"Faculty of Computer and Information Sciences, Department of Computer Engineering, Sakarya University, Sakarya, Turkey","institution_ids":["https://openalex.org/I103703290"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5034943146"],"corresponding_institution_ids":["https://openalex.org/I103703290","https://openalex.org/I41055640"],"apc_list":{"value":1270,"currency":"USD","value_usd":1270},"apc_paid":{"value":1270,"currency":"USD","value_usd":1270},"fwci":4.3455,"has_fulltext":false,"cited_by_count":12,"citation_normalized_percentile":{"value":0.94587028,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":99},"biblio":{"volume":"36","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11775","display_name":"COVID-19 diagnosis using AI","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11775","display_name":"COVID-19 diagnosis using AI","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10118","display_name":"SARS-CoV-2 and COVID-19 Research","score":0.9933000206947327,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12874","display_name":"Digital Imaging for Blood Diseases","score":0.9664000272750854,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/coronavirus-disease-2019","display_name":"Coronavirus disease 2019 (COVID-19)","score":0.6803715229034424},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6632598638534546},{"id":"https://openalex.org/keywords/encoder","display_name":"Encoder","score":0.6409648656845093},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.5655457377433777},{"id":"https://openalex.org/keywords/transformer","display_name":"Transformer","score":0.5081937313079834},{"id":"https://openalex.org/keywords/mutation","display_name":"Mutation","score":0.4359718859195709},{"id":"https://openalex.org/keywords/2019-20-coronavirus-outbreak","display_name":"2019-20 coronavirus outbreak","score":0.43035003542900085},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.424500048160553},{"id":"https://openalex.org/keywords/severe-acute-respiratory-syndrome-coronavirus-2","display_name":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)","score":0.42040809988975525},{"id":"https://openalex.org/keywords/virology","display_name":"Virology","score":0.131852388381958},{"id":"https://openalex.org/keywords/infectious-disease","display_name":"Infectious disease (medical specialty)","score":0.09213954210281372},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.08035525679588318},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.07977727055549622},{"id":"https://openalex.org/keywords/electrical-engineering","display_name":"Electrical engineering","score":0.07846122980117798},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.07415613532066345},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.06970009207725525}],"concepts":[{"id":"https://openalex.org/C3008058167","wikidata":"https://www.wikidata.org/wiki/Q84263196","display_name":"Coronavirus disease 2019 (COVID-19)","level":4,"score":0.6803715229034424},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6632598638534546},{"id":"https://openalex.org/C118505674","wikidata":"https://www.wikidata.org/wiki/Q42586063","display_name":"Encoder","level":2,"score":0.6409648656845093},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.5655457377433777},{"id":"https://openalex.org/C66322947","wikidata":"https://www.wikidata.org/wiki/Q11658","display_name":"Transformer","level":3,"score":0.5081937313079834},{"id":"https://openalex.org/C501734568","wikidata":"https://www.wikidata.org/wiki/Q42918","display_name":"Mutation","level":3,"score":0.4359718859195709},{"id":"https://openalex.org/C3006700255","wikidata":"https://www.wikidata.org/wiki/Q81068910","display_name":"2019-20 coronavirus outbreak","level":3,"score":0.43035003542900085},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.424500048160553},{"id":"https://openalex.org/C3007834351","wikidata":"https://www.wikidata.org/wiki/Q82069695","display_name":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)","level":5,"score":0.42040809988975525},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.131852388381958},{"id":"https://openalex.org/C524204448","wikidata":"https://www.wikidata.org/wiki/Q788926","display_name":"Infectious disease (medical specialty)","level":3,"score":0.09213954210281372},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.08035525679588318},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.07977727055549622},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.07846122980117798},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.07415613532066345},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.06970009207725525},{"id":"https://openalex.org/C116675565","wikidata":"https://www.wikidata.org/wiki/Q3241045","display_name":"Outbreak","level":2,"score":0.0},{"id":"https://openalex.org/C165801399","wikidata":"https://www.wikidata.org/wiki/Q25428","display_name":"Voltage","level":2,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1080/09540091.2024.2365334","is_oa":true,"landing_page_url":"https://doi.org/10.1080/09540091.2024.2365334","pdf_url":"https://www.tandfonline.com/doi/pdf/10.1080/09540091.2024.2365334?needAccess=true","source":{"id":"https://openalex.org/S4210188800","display_name":"Connection Science","issn_l":"0954-0091","issn":["0954-0091","1360-0494"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320547","host_organization_name":"Taylor & Francis","host_organization_lineage":["https://openalex.org/P4310320547"],"host_organization_lineage_names":["Taylor & Francis"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Connection Science","raw_type":"journal-article"}],"best_oa_location":{"id":"doi:10.1080/09540091.2024.2365334","is_oa":true,"landing_page_url":"https://doi.org/10.1080/09540091.2024.2365334","pdf_url":"https://www.tandfonline.com/doi/pdf/10.1080/09540091.2024.2365334?needAccess=true","source":{"id":"https://openalex.org/S4210188800","display_name":"Connection Science","issn_l":"0954-0091","issn":["0954-0091","1360-0494"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320547","host_organization_name":"Taylor & Francis","host_organization_lineage":["https://openalex.org/P4310320547"],"host_organization_lineage_names":["Taylor & Francis"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Connection Science","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4399578262.pdf"},"referenced_works_count":79,"referenced_works":["https://openalex.org/W1501531009","https://openalex.org/W1591801644","https://openalex.org/W1680392829","https://openalex.org/W1924770834","https://openalex.org/W2064675550","https://openalex.org/W2113307832","https://openalex.org/W2136132422","https://openalex.org/W2159294971","https://openalex.org/W2318830132","https://openalex.org/W2380358550","https://openalex.org/W2903899730","https://openalex.org/W2918408501","https://openalex.org/W2946794439","https://openalex.org/W2985407284","https://openalex.org/W2990322807","https://openalex.org/W2999309192","https://openalex.org/W3003217347","https://openalex.org/W3003415212","https://openalex.org/W3010223921","https://openalex.org/W3012189167","https://openalex.org/W3016655948","https://openalex.org/W3019765297","https://openalex.org/W3031696893","https://openalex.org/W3033568853","https://openalex.org/W3036607916","https://openalex.org/W3037346535","https://openalex.org/W3041176193","https://openalex.org/W3046463683","https://openalex.org/W3048538617","https://openalex.org/W3087441472","https://openalex.org/W3118000412","https://openalex.org/W3124239325","https://openalex.org/W3127420938","https://openalex.org/W3128862819","https://openalex.org/W3130153679","https://openalex.org/W3131666147","https://openalex.org/W3143978330","https://openalex.org/W3158886287","https://openalex.org/W3168404669","https://openalex.org/W3168777076","https://openalex.org/W3175933934","https://openalex.org/W3176238231","https://openalex.org/W3189185839","https://openalex.org/W3190572136","https://openalex.org/W3195640342","https://openalex.org/W3197505096","https://openalex.org/W3198423708","https://openalex.org/W3203433659","https://openalex.org/W3211150081","https://openalex.org/W3212536238","https://openalex.org/W4200236772","https://openalex.org/W4200307083","https://openalex.org/W4206644256","https://openalex.org/W4210668940","https://openalex.org/W4213445854","https://openalex.org/W4221005032","https://openalex.org/W4226050536","https://openalex.org/W4226271739","https://openalex.org/W4239510810","https://openalex.org/W4280628797","https://openalex.org/W4286009680","https://openalex.org/W4292136548","https://openalex.org/W4311278799","https://openalex.org/W4312094581","https://openalex.org/W4321209244","https://openalex.org/W4360585160","https://openalex.org/W4376142162","https://openalex.org/W4385245566","https://openalex.org/W4388759590","https://openalex.org/W4390884647","https://openalex.org/W4391423070","https://openalex.org/W4391887075","https://openalex.org/W4392465065","https://openalex.org/W4392932090","https://openalex.org/W6676931166","https://openalex.org/W6683272254","https://openalex.org/W6739901393","https://openalex.org/W6756040250","https://openalex.org/W6776757780"],"related_works":["https://openalex.org/W4200329650","https://openalex.org/W3127156785","https://openalex.org/W4205754011","https://openalex.org/W3009669391","https://openalex.org/W4205215807","https://openalex.org/W3005417802","https://openalex.org/W3171943759","https://openalex.org/W4226296940","https://openalex.org/W3028835529","https://openalex.org/W3036314732"],"abstract_inverted_index":{"The":[0,17,46,106,124,171],"development":[1,178],"of":[2,19,30,33,48,130,133,136,139,143,155,179],"vaccines":[3,22,180],"and":[4,23,120,141,181],"drugs":[5,24],"is":[6,39,91],"very":[7,40],"important":[8,41],"in":[9,51,66,97],"combating":[10],"the":[11,31,34,52,94,98,102,112,146,153,156,166,177],"coronavirus":[12],"disease":[13],"2019":[14],"(COVID-19)":[15],"virus.":[16,36],"effectiveness":[18],"these":[20],"developed":[21],"has":[25],"decreased":[26],"as":[27],"a":[28,72],"result":[29],"mutation":[32,59,86,163],"COVID-19":[35,44,58,85,99,147],"Therefore,":[37],"it":[38],"to":[42,92,151],"combat":[43],"mutations.":[45],"majority":[47],"studies":[49,55],"published":[50],"literature":[53],"are":[54,174],"other":[56],"than":[57],"prediction.":[60,87],"We":[61],"focused":[62],"on":[63,145,165],"this":[64,67],"gap":[65],"study.":[68],"This":[69],"study":[70],"proposes":[71],"robust":[73],"transformer":[74],"encoder":[75],"based":[76],"model":[77,115,127],"with":[78],"Adam":[79],"optimizer":[80],"algorithm":[81],"called":[82],"TfrAdmCov":[83,104,114,126,158],"for":[84,176],"Our":[88],"main":[89],"motivation":[90],"predict":[93],"mutations":[95],"occurring":[96],"virus":[100],"using":[101],"proposed":[103,113,125,157],"model.":[105],"experimental":[107],"results":[108,172],"have":[109],"shown":[110],"that":[111],"outperforms":[116],"both":[117],"baseline":[118],"models":[119],"several":[121],"state-of-the-art":[122],"models.":[123],"reached":[128],"accuracy":[129],"99.93%,":[131],"precision":[132],"100.00%,":[134],"recall":[135],"97.38%,":[137],"f1-score":[138],"98.67%":[140],"MCC":[142],"98.65%":[144],"testing":[148],"dataset.":[149,170],"Moreover,":[150],"evaluate":[152],"performance":[154],"model,":[159],"we":[160],"carried":[161],"out":[162],"prediction":[164],"influenza":[167],"A/H3N2":[168],"HA":[169],"obtained":[173],"promising":[175],"drugs.":[182]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":9}],"updated_date":"2026-06-15T08:34:33.830935","created_date":"2025-10-10T00:00:00"}
