{"id":"https://openalex.org/W2108730482","doi":"https://doi.org/10.1080/088395101753242688","title":"Agent interaction for bioinformatics data management","display_name":"Agent interaction for bioinformatics data management","publication_year":2001,"publication_date":"2001-11-01","ids":{"openalex":"https://openalex.org/W2108730482","doi":"https://doi.org/10.1080/088395101753242688","mag":"2108730482"},"language":"en","primary_location":{"id":"doi:10.1080/088395101753242688","is_oa":false,"landing_page_url":"https://doi.org/10.1080/088395101753242688","pdf_url":null,"source":{"id":"https://openalex.org/S125501549","display_name":"Applied Artificial Intelligence","issn_l":"0883-9514","issn":["0883-9514","1087-6545"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320547","host_organization_name":"Taylor & Francis","host_organization_lineage":["https://openalex.org/P4310320547"],"host_organization_lineage_names":["Taylor & Francis"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Applied Artificial Intelligence","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5063296381","display_name":"Kevin Bryson","orcid":"https://orcid.org/0000-0002-1163-6368"},"institutions":[{"id":"https://openalex.org/I39555362","display_name":"University of Warwick","ror":"https://ror.org/01a77tt86","country_code":"GB","type":"education","lineage":["https://openalex.org/I39555362"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"K. Bryson","raw_affiliation_strings":["University of Warwick"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Warwick","institution_ids":["https://openalex.org/I39555362"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069481846","display_name":"G. Flucke","orcid":"https://orcid.org/0000-0002-0926-2061"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"M. Luck","raw_affiliation_strings":["Informatics"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Informatics","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012585972","display_name":"Mike Joy","orcid":"https://orcid.org/0000-0001-9826-5928"},"institutions":[{"id":"https://openalex.org/I39555362","display_name":"University of Warwick","ror":"https://ror.org/01a77tt86","country_code":"GB","type":"education","lineage":["https://openalex.org/I39555362"]},{"id":"https://openalex.org/I43439940","display_name":"University of Southampton","ror":"https://ror.org/01ryk1543","country_code":"GB","type":"education","lineage":["https://openalex.org/I43439940"]},{"id":"https://openalex.org/I59433898","display_name":"Brunel University of London","ror":"https://ror.org/00dn4t376","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I59433898"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"M. Joy","raw_affiliation_strings":["\u00a7\u00a4 Electronics and Computer Science, University of Southampton, SO17 1BJ, UK","\u00a9\u00a4 Department of Biological Sciences, Brunel University, UB8 3PH, UK","\u00a3 \u00a5\u00a4 Department of Computer Science, University of Warwick, CV4 7AL, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"\u00a7\u00a4 Electronics and Computer Science, University of Southampton, SO17 1BJ, UK","institution_ids":["https://openalex.org/I43439940"]},{"raw_affiliation_string":"\u00a9\u00a4 Department of Biological Sciences, Brunel University, UB8 3PH, UK","institution_ids":["https://openalex.org/I59433898"]},{"raw_affiliation_string":"\u00a3 \u00a5\u00a4 Department of Computer Science, University of Warwick, CV4 7AL, UK","institution_ids":["https://openalex.org/I39555362"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5108445457","display_name":"D. T. Jones","orcid":null},"institutions":[{"id":"https://openalex.org/I39555362","display_name":"University of Warwick","ror":"https://ror.org/01a77tt86","country_code":"GB","type":"education","lineage":["https://openalex.org/I39555362"]},{"id":"https://openalex.org/I43439940","display_name":"University of Southampton","ror":"https://ror.org/01ryk1543","country_code":"GB","type":"education","lineage":["https://openalex.org/I43439940"]},{"id":"https://openalex.org/I59433898","display_name":"Brunel University of London","ror":"https://ror.org/00dn4t376","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I59433898"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"D. T. Jones","raw_affiliation_strings":["\u00a7\u00a4 Electronics and Computer Science, University of Southampton, SO17 1BJ, UK","\u00a9\u00a4 Department of Biological Sciences, Brunel University, UB8 3PH, UK","\u00a3 \u00a5\u00a4 Department of Computer Science, University of Warwick, CV4 7AL, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"\u00a7\u00a4 Electronics and Computer Science, University of Southampton, SO17 1BJ, UK","institution_ids":["https://openalex.org/I43439940"]},{"raw_affiliation_string":"\u00a9\u00a4 Department of Biological Sciences, Brunel University, UB8 3PH, UK","institution_ids":["https://openalex.org/I59433898"]},{"raw_affiliation_string":"\u00a3 \u00a5\u00a4 Department of Computer Science, University of Warwick, CV4 7AL, UK","institution_ids":["https://openalex.org/I39555362"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":2195,"currency":"USD","value_usd":2195},"apc_paid":null,"fwci":1.1189,"has_fulltext":false,"cited_by_count":20,"citation_normalized_percentile":{"value":0.76751456,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"15","issue":"10","first_page":"917","last_page":"947"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.986299991607666,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.986299991607666,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11764","display_name":"Evolution and Genetic Dynamics","score":0.9420999884605408,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8787825107574463},{"id":"https://openalex.org/keywords/key","display_name":"Key (lock)","score":0.6589087247848511},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.5305963754653931},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4899884760379791},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.44027936458587646},{"id":"https://openalex.org/keywords/data-integration","display_name":"Data integration","score":0.43617287278175354},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.428158700466156},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4144812822341919},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.084178626537323}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8787825107574463},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.6589087247848511},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.5305963754653931},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4899884760379791},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.44027936458587646},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.43617287278175354},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.428158700466156},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4144812822341919},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.084178626537323},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0}],"mesh":[],"locations_count":6,"locations":[{"id":"doi:10.1080/088395101753242688","is_oa":false,"landing_page_url":"https://doi.org/10.1080/088395101753242688","pdf_url":null,"source":{"id":"https://openalex.org/S125501549","display_name":"Applied Artificial Intelligence","issn_l":"0883-9514","issn":["0883-9514","1087-6545"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320547","host_organization_name":"Taylor & Francis","host_organization_lineage":["https://openalex.org/P4310320547"],"host_organization_lineage_names":["Taylor & Francis"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Applied Artificial Intelligence","raw_type":"journal-article"},{"id":"pmh:oai:eprints.soton.ac.uk:256371","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306401019","display_name":"ePrints Soton (University of Southampton)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I43439940","host_organization_name":"University of Southampton","host_organization_lineage":["https://openalex.org/I43439940"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.24.3249","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.24.3249","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.ecs.soton.ac.uk/~mml/papers/aai01.pdf","raw_type":"text"},{"id":"pmh:oai:eprints.gla.ac.uk:269979","is_oa":false,"landing_page_url":"https://eprints.gla.ac.uk/269979/","pdf_url":null,"source":{"id":"https://openalex.org/S4210235606","display_name":"ENLIGHTEN (Jurnal Bimbingan dan Konseling Islam)","issn_l":"2622-8912","issn":["2622-8912","2622-8920"],"is_oa":false,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Articles"},{"id":"pmh:oai:eprints.ucl.ac.uk.OAI2:103192","is_oa":false,"landing_page_url":"http://discovery.ucl.ac.uk/103192/","pdf_url":null,"source":{"id":"https://openalex.org/S4306400024","display_name":"UCL Discovery (University College London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I45129253","host_organization_name":"University College London","host_organization_lineage":["https://openalex.org/I45129253"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Applied Artificial Intelligence , 15 (10) 917 - 947. (2001)","raw_type":"Article"},{"id":"pmh:oai:eprints.ucl.ac.uk.OAI2:103206","is_oa":false,"landing_page_url":"http://discovery.ucl.ac.uk/103206/","pdf_url":null,"source":{"id":"https://openalex.org/S4306400024","display_name":"UCL Discovery (University College London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I45129253","host_organization_name":"University College London","host_organization_lineage":["https://openalex.org/I45129253"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"APPLIED ARTIFICIAL INTELLIGENCE , 15 (10) pp. 917-947. (2001)","raw_type":"Article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure","score":0.46000000834465027}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":42,"referenced_works":["https://openalex.org/W23185326","https://openalex.org/W1481557398","https://openalex.org/W1536270671","https://openalex.org/W1549061150","https://openalex.org/W1551819276","https://openalex.org/W1558365920","https://openalex.org/W1575881975","https://openalex.org/W1577244769","https://openalex.org/W1579912303","https://openalex.org/W1585233746","https://openalex.org/W1588677580","https://openalex.org/W1936508729","https://openalex.org/W1966041739","https://openalex.org/W1975796937","https://openalex.org/W1996073320","https://openalex.org/W2003144438","https://openalex.org/W2031752690","https://openalex.org/W2033496784","https://openalex.org/W2055043387","https://openalex.org/W2078664687","https://openalex.org/W2089606003","https://openalex.org/W2091623843","https://openalex.org/W2098755476","https://openalex.org/W2103017472","https://openalex.org/W2103129584","https://openalex.org/W2106882534","https://openalex.org/W2140275089","https://openalex.org/W2141148930","https://openalex.org/W2144483796","https://openalex.org/W2146888641","https://openalex.org/W2149137209","https://openalex.org/W2150486269","https://openalex.org/W2153187042","https://openalex.org/W2156610741","https://openalex.org/W2158714788","https://openalex.org/W2166699767","https://openalex.org/W2168909179","https://openalex.org/W2169276524","https://openalex.org/W2624908529","https://openalex.org/W2746838505","https://openalex.org/W4213149192","https://openalex.org/W4213208922"],"related_works":["https://openalex.org/W2140798747","https://openalex.org/W2730112582","https://openalex.org/W2948169060","https://openalex.org/W2358580169","https://openalex.org/W2111347279","https://openalex.org/W2110696645","https://openalex.org/W2487211728","https://openalex.org/W2378096925","https://openalex.org/W2348031209","https://openalex.org/W1966962592"],"abstract_inverted_index":{"As":[0],"genome":[1],"projects":[2],"produce":[3],"increasingly":[4],"large":[5],"quantities":[6],"of":[7,23,58,77,93,137],"sequence":[8,13],"data,":[9],"fast":[10],"and":[11,30,46,52,67,124,135,140,154,160,163,166],"reliable":[12],"analysis":[14,138,155],"methods":[15,19,139,148],"are":[16,28],"required.":[17],"Basic":[18],"for":[20,122],"comparing":[21],"pairs":[22],"sequences":[24],"or":[25],"detecting":[26],"patterns":[27],"well-developed,":[29],"now":[31],"the":[32,44,94,128,133],"key":[33],"problem":[34,103],"in":[35,49,126,157],"analyzing":[36],"this":[37,114],"genomic":[38],"data":[39],"is":[40,85],"how":[41],"to":[42,62,75,80,87],"integrate":[43],"software":[45],"primary":[47],"databases":[48,153],"a":[50,91,119],"flexible":[51,161],"robust":[53],"way.":[54],"The":[55,142],"wide":[56],"range":[57],"available":[59],"programs":[60],"conform":[61],"very":[63],"different":[64],"input,":[65],"output,":[66],"processing":[68,102],"requirements,":[69],"typically":[70],"with":[71],"little":[72],"consideration":[73],"given":[74],"issues":[76,83],"integration.":[78],"Key":[79],"addressing":[81],"these":[82],"appropriately":[84],"not":[86,145],"consider":[88],"them":[89],"as":[90,99,107,109],"result":[92],"biological":[95],"domain,":[96],"but":[97,149],"instead":[98,150],"an":[100,110,158],"information":[101],"that":[104],"suggests":[105],"nothing":[106],"much":[108],"agentbased":[111],"approach.":[112],"In":[113],"paper,":[115],"we":[116],"introduce":[117],"GeneWeaver,":[118],"multi-agent":[120],"system":[121,143],"bioinformatics,":[123],"describe":[125],"detail":[127],"agent":[129],"interactions":[130],"which":[131],"allow":[132],"integration":[134],"management":[136],"data.":[141],"does":[144],"offer":[146],"new":[147],"manages":[151],"existing":[152],"tools":[156],"effective":[159],"way,":[162],"facilitates":[164],"easy":[165],"dynamic":[167],"growth.":[168]},"counts_by_year":[{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1}],"updated_date":"2026-07-29T09:40:50.615796","created_date":"2025-10-10T00:00:00"}