{"id":"https://openalex.org/W2106077904","doi":"https://doi.org/10.1080/00207160802140049","title":"A new algorithm for generation of different types of RNA","display_name":"A new algorithm for generation of different types of RNA","publication_year":2008,"publication_date":"2008-09-29","ids":{"openalex":"https://openalex.org/W2106077904","doi":"https://doi.org/10.1080/00207160802140049","mag":"2106077904"},"language":"en","primary_location":{"id":"doi:10.1080/00207160802140049","is_oa":false,"landing_page_url":"https://doi.org/10.1080/00207160802140049","pdf_url":null,"source":{"id":"https://openalex.org/S124867444","display_name":"International Journal of Computer Mathematics","issn_l":"0020-7160","issn":["0020-7160","1026-7425","1029-0265"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320547","host_organization_name":"Taylor & Francis","host_organization_lineage":["https://openalex.org/P4310320547"],"host_organization_lineage_names":["Taylor & Francis"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Computer Mathematics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5087204372","display_name":"E. Seyedi-Tabari","orcid":null},"institutions":[{"id":"https://openalex.org/I23946033","display_name":"University of Tehran","ror":"https://ror.org/05vf56z40","country_code":"IR","type":"education","lineage":["https://openalex.org/I23946033"]}],"countries":["IR"],"is_corresponding":false,"raw_author_name":"E. Seyedi-Tabari","raw_affiliation_strings":["Center of Excellence in Biomathematics , School of Mathematics, Statistics and Computer Science, University of Tehran , Tehran, Iran"],"affiliations":[{"raw_affiliation_string":"Center of Excellence in Biomathematics , School of Mathematics, Statistics and Computer Science, University of Tehran , Tehran, Iran","institution_ids":["https://openalex.org/I23946033"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108205508","display_name":"H. Ahrabian","orcid":null},"institutions":[{"id":"https://openalex.org/I23946033","display_name":"University of Tehran","ror":"https://ror.org/05vf56z40","country_code":"IR","type":"education","lineage":["https://openalex.org/I23946033"]},{"id":"https://openalex.org/I4210146419","display_name":"Institute for Research in Fundamental Sciences","ror":"https://ror.org/04xreqs31","country_code":"IR","type":"facility","lineage":["https://openalex.org/I4210146419"]},{"id":"https://openalex.org/I3145578848","display_name":"Institute for Cognitive Science Studies","ror":"https://ror.org/0378cd528","country_code":"IR","type":"facility","lineage":["https://openalex.org/I3145578848"]}],"countries":["IR"],"is_corresponding":true,"raw_author_name":"H. Ahrabian","raw_affiliation_strings":["Center of Excellence in Biomathematics , School of Mathematics, Statistics and Computer Science, University of Tehran , Tehran, Iran ; Institute for Studies in Theoretical Physics and Mathematics (I.P.M.) , Tehran, Iran","Center of Excellence in Biomathematics , School of Mathematics, Statistics and Computer Science, University of Tehran , Tehran, Iran","Institute for Studies in Theoretical Physics and Mathematics (I.P.M.) , Tehran, Iran"],"affiliations":[{"raw_affiliation_string":"Center of Excellence in Biomathematics , School of Mathematics, Statistics and Computer Science, University of Tehran , Tehran, Iran ; Institute for Studies in Theoretical Physics and Mathematics (I.P.M.) , Tehran, Iran","institution_ids":["https://openalex.org/I23946033"]},{"raw_affiliation_string":"Center of Excellence in Biomathematics , School of Mathematics, Statistics and Computer Science, University of Tehran , Tehran, Iran","institution_ids":["https://openalex.org/I23946033"]},{"raw_affiliation_string":"Institute for Studies in Theoretical Physics and Mathematics (I.P.M.) , Tehran, Iran","institution_ids":["https://openalex.org/I3145578848","https://openalex.org/I4210146419"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5028185671","display_name":"Abbas Nowzari-Dalini","orcid":"https://orcid.org/0000-0003-4598-2645"},"institutions":[{"id":"https://openalex.org/I23946033","display_name":"University of Tehran","ror":"https://ror.org/05vf56z40","country_code":"IR","type":"education","lineage":["https://openalex.org/I23946033"]},{"id":"https://openalex.org/I3145578848","display_name":"Institute for Cognitive Science Studies","ror":"https://ror.org/0378cd528","country_code":"IR","type":"facility","lineage":["https://openalex.org/I3145578848"]},{"id":"https://openalex.org/I4210146419","display_name":"Institute for Research in Fundamental Sciences","ror":"https://ror.org/04xreqs31","country_code":"IR","type":"facility","lineage":["https://openalex.org/I4210146419"]}],"countries":["IR"],"is_corresponding":false,"raw_author_name":"A. Nowzari-Dalini","raw_affiliation_strings":["Center of Excellence in Biomathematics , School of Mathematics, Statistics and Computer Science, University of Tehran , Tehran, Iran ; Institute for Studies in Theoretical Physics and Mathematics (I.P.M.) , Tehran, Iran","Institute for Studies in Theoretical Physics and Mathematics (I.P.M.) , Tehran, Iran","Center of Excellence in Biomathematics , School of Mathematics, Statistics and Computer Science, University of Tehran , Tehran, Iran"],"affiliations":[{"raw_affiliation_string":"Center of Excellence in Biomathematics , School of Mathematics, Statistics and Computer Science, University of Tehran , Tehran, Iran ; Institute for Studies in Theoretical Physics and Mathematics (I.P.M.) , Tehran, Iran","institution_ids":["https://openalex.org/I23946033"]},{"raw_affiliation_string":"Institute for Studies in Theoretical Physics and Mathematics (I.P.M.) , Tehran, Iran","institution_ids":["https://openalex.org/I3145578848","https://openalex.org/I4210146419"]},{"raw_affiliation_string":"Center of Excellence in Biomathematics , School of Mathematics, Statistics and Computer Science, University of Tehran , Tehran, Iran","institution_ids":["https://openalex.org/I23946033"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5108205508"],"corresponding_institution_ids":["https://openalex.org/I23946033","https://openalex.org/I3145578848","https://openalex.org/I4210146419"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":8,"citation_normalized_percentile":{"value":0.11780573,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"87","issue":"6","first_page":"1197","last_page":"1207"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10911","display_name":"Chemical Synthesis and Analysis","score":0.9934999942779541,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10432","display_name":"DNA and Nucleic Acid Chemistry","score":0.9898999929428101,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.6886381506919861},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.6846843957901001},{"id":"https://openalex.org/keywords/bijection","display_name":"Bijection","score":0.5638960599899292},{"id":"https://openalex.org/keywords/generating-function","display_name":"Generating function","score":0.5498858690261841},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.5373815894126892},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.5268123149871826},{"id":"https://openalex.org/keywords/order","display_name":"Order (exchange)","score":0.52113276720047},{"id":"https://openalex.org/keywords/integer","display_name":"Integer (computer science)","score":0.5178330540657043},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.4750922918319702},{"id":"https://openalex.org/keywords/key","display_name":"Key (lock)","score":0.4311137795448303},{"id":"https://openalex.org/keywords/discrete-mathematics","display_name":"Discrete mathematics","score":0.386283814907074},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.18752437829971313},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.06787216663360596}],"concepts":[{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.6886381506919861},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.6846843957901001},{"id":"https://openalex.org/C24424167","wikidata":"https://www.wikidata.org/wiki/Q180907","display_name":"Bijection","level":2,"score":0.5638960599899292},{"id":"https://openalex.org/C204911207","wikidata":"https://www.wikidata.org/wiki/Q860609","display_name":"Generating function","level":2,"score":0.5498858690261841},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.5373815894126892},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.5268123149871826},{"id":"https://openalex.org/C182306322","wikidata":"https://www.wikidata.org/wiki/Q1779371","display_name":"Order (exchange)","level":2,"score":0.52113276720047},{"id":"https://openalex.org/C97137487","wikidata":"https://www.wikidata.org/wiki/Q729138","display_name":"Integer (computer science)","level":2,"score":0.5178330540657043},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.4750922918319702},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.4311137795448303},{"id":"https://openalex.org/C118615104","wikidata":"https://www.wikidata.org/wiki/Q121416","display_name":"Discrete mathematics","level":1,"score":0.386283814907074},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.18752437829971313},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.06787216663360596},{"id":"https://openalex.org/C10138342","wikidata":"https://www.wikidata.org/wiki/Q43015","display_name":"Finance","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1080/00207160802140049","is_oa":false,"landing_page_url":"https://doi.org/10.1080/00207160802140049","pdf_url":null,"source":{"id":"https://openalex.org/S124867444","display_name":"International Journal of Computer Mathematics","issn_l":"0020-7160","issn":["0020-7160","1026-7425","1029-0265"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320547","host_organization_name":"Taylor & Francis","host_organization_lineage":["https://openalex.org/P4310320547"],"host_organization_lineage_names":["Taylor & Francis"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Computer Mathematics","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320322667","display_name":"University of Tehran","ror":"https://ror.org/05vf56z40"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":28,"referenced_works":["https://openalex.org/W1600463518","https://openalex.org/W1964195795","https://openalex.org/W1965626746","https://openalex.org/W1968245790","https://openalex.org/W1973415684","https://openalex.org/W1974139773","https://openalex.org/W1998997565","https://openalex.org/W2000191287","https://openalex.org/W2006151702","https://openalex.org/W2008186486","https://openalex.org/W2039339864","https://openalex.org/W2061158331","https://openalex.org/W2062675641","https://openalex.org/W2077492027","https://openalex.org/W2080441570","https://openalex.org/W2088513892","https://openalex.org/W2093174617","https://openalex.org/W2128819596","https://openalex.org/W2141157874","https://openalex.org/W2184243335","https://openalex.org/W2316419065","https://openalex.org/W2369550176","https://openalex.org/W2752853835","https://openalex.org/W2752885492","https://openalex.org/W3145128584","https://openalex.org/W4234667141","https://openalex.org/W4241645849","https://openalex.org/W4247557026"],"related_works":["https://openalex.org/W4313160393","https://openalex.org/W2952364560","https://openalex.org/W2492756589","https://openalex.org/W2952464540","https://openalex.org/W4297076432","https://openalex.org/W1828710639","https://openalex.org/W2119512680","https://openalex.org/W1630241306","https://openalex.org/W2144739916","https://openalex.org/W1495264477"],"abstract_inverted_index":{"The":[0,70,83],"structure":[1,18,51],"of":[2,36,41,60,67,86,97,103],"RNA":[3,39,61],"is":[4,13,90,94],"often":[5],"the":[6,33,49,65,87,95,101],"key":[7],"to":[8,64],"its":[9],"function":[10,20],"and":[11,19,52,78,99,106,112],"there":[12],"a":[14,28,37,46],"close":[15],"relationship":[16],"between":[17,48],"in":[21,81],"biology.":[22],"In":[23],"this":[24],"paper,":[25],"we":[26],"present":[27],"new":[29],"algorithm":[30,89],"for":[31],"generating":[32,57],"possible":[34],"shapes":[35],"single-stranded":[38],"molecule":[40],"length":[42],"\u2113.":[43],"We":[44],"use":[45],"bijection":[47],"secondary":[50],"specific":[53],"ordered":[54],"trees.":[55,69],"Hence,":[56],"different":[58],"types":[59],"becomes":[62],"equivalent":[63],"generation":[66],"these":[68],"generated":[71],"trees":[72],"are":[73,79,117],"encoded":[74],"as":[75],"integer":[76],"sequences":[77],"produced":[80],"A-order.":[82],"time":[84,115],"complexity":[85,116],"presented":[88],"O(\u2113\u2212k)":[91],"where":[92],"\u2113":[93],"number":[96,102],"bases":[98],"k,":[100],"pairings.":[104],"Ranking":[105],"unranking":[107],"algorithms":[108],"with":[109],"O(k\u2113\u2212k":[110],"2)":[111,114],"O(\u21132+k":[113],"also":[118],"presented.":[119]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}