{"id":"https://openalex.org/W2573798673","doi":"https://doi.org/10.1045/january2017-samuel","title":"Towards Reproducibility of Microscopy Experiments","display_name":"Towards Reproducibility of Microscopy Experiments","publication_year":2017,"publication_date":"2017-01-01","ids":{"openalex":"https://openalex.org/W2573798673","doi":"https://doi.org/10.1045/january2017-samuel","mag":"2573798673"},"language":"en","primary_location":{"id":"doi:10.1045/january2017-samuel","is_oa":true,"landing_page_url":"https://doi.org/10.1045/january2017-samuel","pdf_url":null,"source":{"id":"https://openalex.org/S119508283","display_name":"D-Lib Magazine","issn_l":"1082-9873","issn":["1082-9873"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310316316","host_organization_name":"Corporation for National Research Initiatives","host_organization_lineage":["https://openalex.org/P4310316316"],"host_organization_lineage_names":["Corporation for National Research Initiatives"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"D-Lib Magazine","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://doi.org/10.1045/january2017-samuel","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5029559772","display_name":"Sheeba Samuel","orcid":"https://orcid.org/0000-0002-7981-8504"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Sheeba Samuel","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013340100","display_name":"Frank Taubert","orcid":"https://orcid.org/0000-0003-2662-6637"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Frank Taubert","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065513514","display_name":"Daniel Walther","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Daniel Walther","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024963110","display_name":"Birgitta K\u00f6nig\u2010Ries","orcid":"https://orcid.org/0000-0002-2382-9722"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Birgitta K\u00f6nig-Ries","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5059494979","display_name":"H. Martin B\u00fccker","orcid":"https://orcid.org/0000-0002-5210-0789"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"H. Martin B\u00fccker","raw_affiliation_strings":[],"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5029559772"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":2.5294,"has_fulltext":false,"cited_by_count":9,"citation_normalized_percentile":{"value":0.91650213,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"23","issue":"1/2","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.9865000247955322,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9502000212669373,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.8321335315704346},{"id":"https://openalex.org/keywords/documentation","display_name":"Documentation","score":0.7526816129684448},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6706091165542603},{"id":"https://openalex.org/keywords/reproducibility","display_name":"Reproducibility","score":0.5672004818916321},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5497600436210632},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.5224224925041199},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.46965470910072327},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.3396639823913574},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.12686994671821594},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.10038331151008606},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.07455256581306458}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.8321335315704346},{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.7526816129684448},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6706091165542603},{"id":"https://openalex.org/C9893847","wikidata":"https://www.wikidata.org/wiki/Q1425625","display_name":"Reproducibility","level":2,"score":0.5672004818916321},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5497600436210632},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.5224224925041199},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.46965470910072327},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.3396639823913574},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.12686994671821594},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.10038331151008606},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.07455256581306458},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C43617362","wikidata":"https://www.wikidata.org/wiki/Q170050","display_name":"Chromatography","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1045/january2017-samuel","is_oa":true,"landing_page_url":"https://doi.org/10.1045/january2017-samuel","pdf_url":null,"source":{"id":"https://openalex.org/S119508283","display_name":"D-Lib Magazine","issn_l":"1082-9873","issn":["1082-9873"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310316316","host_organization_name":"Corporation for National Research Initiatives","host_organization_lineage":["https://openalex.org/P4310316316"],"host_organization_lineage_names":["Corporation for National Research Initiatives"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"D-Lib Magazine","raw_type":"journal-article"}],"best_oa_location":{"id":"doi:10.1045/january2017-samuel","is_oa":true,"landing_page_url":"https://doi.org/10.1045/january2017-samuel","pdf_url":null,"source":{"id":"https://openalex.org/S119508283","display_name":"D-Lib Magazine","issn_l":"1082-9873","issn":["1082-9873"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310316316","host_organization_name":"Corporation for National Research Initiatives","host_organization_lineage":["https://openalex.org/P4310316316"],"host_organization_lineage_names":["Corporation for National Research Initiatives"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"D-Lib Magazine","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2413717610","https://openalex.org/W1973270181","https://openalex.org/W2417696084","https://openalex.org/W2368782778","https://openalex.org/W2087830269","https://openalex.org/W3106281778","https://openalex.org/W2003643616","https://openalex.org/W638612878","https://openalex.org/W2140154150","https://openalex.org/W2083330954"],"abstract_inverted_index":{"The":[0,52],"rapid":[1],"evolution":[2],"of":[3,15,18,27,38,54,60,86,92,102,106,118,130,138,140,167],"various":[4],"technologies":[5,46],"in":[6,89],"different":[7],"scientific":[8,74,87,132],"disciplines":[9],"has":[10],"led":[11],"to":[12,35,72,111,127],"the":[13,28,36,39,49,58,84,90,99,116,128,160],"generation":[14],"large":[16],"volumes":[17],"high":[19],"dimensional":[20],"data.":[21],"Studies":[22],"have":[23,67],"shown":[24],"that":[25,145],"most":[26],"published":[29],"work":[30],"is":[31,146],"not":[32],"reproducible":[33],"due":[34],"non-availability":[37],"datasets,":[40],"code,":[41],"algorithm,":[42],"workflow,":[43],"software,":[44],"and":[45,57,114,162],"used":[47],"for":[48,165],"underlying":[50],"experiments.":[51,75,169],"lack":[53],"sufficient":[55],"documentation":[56],"deficit":[59],"data":[61],"sharing":[62],"among":[63],"particular":[64],"research":[65,120],"communities":[66],"made":[68],"it":[69,122],"extremely":[70],"difficult":[71],"reproduce":[73,115],"In":[76],"this":[77],"article,":[78],"we":[79],"propose":[80],"a":[81,136,141],"methodology":[82],"enhancing":[83],"reproducibility":[85,166],"experiments":[88],"domain":[91],"microscopy":[93,168],"techniques.":[94],"Though":[95],"our":[96],"approach":[97],"addresses":[98],"specific":[100],"requirements":[101,129],"an":[103],"interdisciplinary":[104],"team":[105],"scientists":[107],"from":[108],"experimental":[109],"biology":[110],"store,":[112],"manage,":[113],"workflow":[117],"their":[119],"experiments,":[121],"can":[123],"also":[124],"be":[125],"extended":[126],"other":[131],"communities.":[133],"We":[134,158],"present":[135],"proof":[137],"concept":[139],"central":[142],"storage":[143],"system":[144],"based":[147],"on":[148],"OMERO":[149],"(Allan":[150],"et":[151],"al.,":[152],"Nature":[153],"Methods":[154],"9,":[155],"245-253,":[156],"2012).":[157],"discuss":[159],"criteria":[161],"attributes":[163],"needed":[164]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":3}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
