{"id":"https://openalex.org/W2555234780","doi":"https://doi.org/10.1039/9781782626732-00178","title":"Informatics Solutions for Selected Reaction Monitoring","display_name":"Informatics Solutions for Selected Reaction Monitoring","publication_year":2016,"publication_date":"2016-11-15","ids":{"openalex":"https://openalex.org/W2555234780","doi":"https://doi.org/10.1039/9781782626732-00178","mag":"2555234780"},"language":"en","primary_location":{"id":"doi:10.1039/9781782626732-00178","is_oa":false,"landing_page_url":"https://doi.org/10.1039/9781782626732-00178","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proteome Informatics","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5003883020","display_name":"Birgit Schilling","orcid":"https://orcid.org/0000-0001-9907-2749"},"institutions":[{"id":"https://openalex.org/I1337826666","display_name":"Buck Institute for Research on Aging","ror":"https://ror.org/050sv4x28","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1337826666"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Birgit Schilling","raw_affiliation_strings":["Buck Institute for Research on Aging 8001 Redwood Blvd Novato California 94945 USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Buck Institute for Research on Aging 8001 Redwood Blvd Novato California 94945 USA","institution_ids":["https://openalex.org/I1337826666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031754851","display_name":"Brendan MacLean","orcid":"https://orcid.org/0000-0002-9575-0255"},"institutions":[{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Brendan Maclean","raw_affiliation_strings":["Department of Genome Sciences, University of Washington School of Medicine Foege Building S113, 3720 15th Ave NE Seattle Washington 98195 USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genome Sciences, University of Washington School of Medicine Foege Building S113, 3720 15th Ave NE Seattle Washington 98195 USA","institution_ids":["https://openalex.org/I201448701"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045772780","display_name":"Jason M. Held","orcid":"https://orcid.org/0000-0001-8024-2736"},"institutions":[{"id":"https://openalex.org/I204465549","display_name":"Washington University in St. Louis","ror":"https://ror.org/01yc7t268","country_code":"US","type":"education","lineage":["https://openalex.org/I204465549"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jason M. Held","raw_affiliation_strings":["Departments of Medicine and Anesthesiology, Washington University School of Medicine 660 South Euclid Avenue St. Louis Missouri 63110 USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Departments of Medicine and Anesthesiology, Washington University School of Medicine 660 South Euclid Avenue St. Louis Missouri 63110 USA","institution_ids":["https://openalex.org/I204465549"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5056510065","display_name":"Bradford W. Gibson","orcid":"https://orcid.org/0000-0003-3745-1940"},"institutions":[{"id":"https://openalex.org/I1337826666","display_name":"Buck Institute for Research on Aging","ror":"https://ror.org/050sv4x28","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1337826666"]},{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bradford W. Gibson","raw_affiliation_strings":["Buck Institute for Research on Aging 8001 Redwood Blvd Novato California 94945 USA","Department of Pharmaceutical Chemistry, University of California San Francisco CA 94143 USA bgibson@buckinstitute.org"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Buck Institute for Research on Aging 8001 Redwood Blvd Novato California 94945 USA","institution_ids":["https://openalex.org/I1337826666"]},{"raw_affiliation_string":"Department of Pharmaceutical Chemistry, University of California San Francisco CA 94143 USA bgibson@buckinstitute.org","institution_ids":["https://openalex.org/I180670191"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5003883020"],"corresponding_institution_ids":["https://openalex.org/I1337826666"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.18229623,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"178","last_page":"199"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10683","display_name":"Mass Spectrometry Techniques and Applications","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/skyline","display_name":"Skyline","score":0.7907557487487793},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6858155131340027},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4895230531692505},{"id":"https://openalex.org/keywords/programmer","display_name":"Programmer","score":0.48484718799591064},{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.43575966358184814},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3378291726112366},{"id":"https://openalex.org/keywords/embedded-system","display_name":"Embedded system","score":0.2310624122619629},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.13907364010810852}],"concepts":[{"id":"https://openalex.org/C2780757406","wikidata":"https://www.wikidata.org/wiki/Q465837","display_name":"Skyline","level":2,"score":0.7907557487487793},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6858155131340027},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4895230531692505},{"id":"https://openalex.org/C2778514511","wikidata":"https://www.wikidata.org/wiki/Q1374194","display_name":"Programmer","level":2,"score":0.48484718799591064},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.43575966358184814},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3378291726112366},{"id":"https://openalex.org/C149635348","wikidata":"https://www.wikidata.org/wiki/Q193040","display_name":"Embedded system","level":1,"score":0.2310624122619629},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.13907364010810852}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1039/9781782626732-00178","is_oa":false,"landing_page_url":"https://doi.org/10.1039/9781782626732-00178","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proteome Informatics","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","score":0.6000000238418579,"id":"https://metadata.un.org/sdg/9"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":55,"referenced_works":["https://openalex.org/W204207630","https://openalex.org/W1490809750","https://openalex.org/W1572033224","https://openalex.org/W1832070833","https://openalex.org/W1965807926","https://openalex.org/W1971042695","https://openalex.org/W1972927753","https://openalex.org/W1982411844","https://openalex.org/W1984236407","https://openalex.org/W1986907471","https://openalex.org/W1995403127","https://openalex.org/W2001482471","https://openalex.org/W2012900739","https://openalex.org/W2023156845","https://openalex.org/W2023720096","https://openalex.org/W2025113307","https://openalex.org/W2027070563","https://openalex.org/W2031095666","https://openalex.org/W2031488930","https://openalex.org/W2039058260","https://openalex.org/W2043951056","https://openalex.org/W2045695999","https://openalex.org/W2049727081","https://openalex.org/W2057761395","https://openalex.org/W2062143232","https://openalex.org/W2062964117","https://openalex.org/W2077492182","https://openalex.org/W2078266248","https://openalex.org/W2083847379","https://openalex.org/W2090248595","https://openalex.org/W2093798041","https://openalex.org/W2100339207","https://openalex.org/W2101186567","https://openalex.org/W2104073709","https://openalex.org/W2104728010","https://openalex.org/W2104764521","https://openalex.org/W2106376891","https://openalex.org/W2108401997","https://openalex.org/W2109326791","https://openalex.org/W2114165700","https://openalex.org/W2117926131","https://openalex.org/W2120310905","https://openalex.org/W2126156743","https://openalex.org/W2135871119","https://openalex.org/W2141091417","https://openalex.org/W2146974071","https://openalex.org/W2156893242","https://openalex.org/W2161811833","https://openalex.org/W2162896172","https://openalex.org/W2164522178","https://openalex.org/W2170791918","https://openalex.org/W2199791113","https://openalex.org/W2285216336","https://openalex.org/W2394706752","https://openalex.org/W4235124130"],"related_works":["https://openalex.org/W2023608319","https://openalex.org/W2727889391","https://openalex.org/W2331788134","https://openalex.org/W2905458094","https://openalex.org/W2331653917","https://openalex.org/W4311154768","https://openalex.org/W3009147976","https://openalex.org/W2789491300","https://openalex.org/W2481563970","https://openalex.org/W2404634345"],"abstract_inverted_index":{"Informatics":[0],"solutions":[1],"for":[2,57,68,80,99,129,162,169],"SRM":[3,20,31,81,109,139,186],"assays":[4],"pose":[5],"several":[6],"specific":[7],"bioinformatics":[8],"challenges":[9],"including":[10,144,151],"assay":[11,82,104],"development,":[12],"generating":[13],"acquisition":[14],"methods,":[15],"and":[16,84,101,118,123,131,148],"data":[17,88,170,187,195],"processing.":[18],"Furthermore,":[19],"is":[21,72,180],"often":[22],"coupled":[23],"to":[24,125,191],"experimental":[25],"designs":[26],"using":[27],"stable":[28,41],"isotope":[29,42],"dilution":[30],"mass":[32,93],"spectrometry":[33],"workflows":[34],"(SID-SRM-MS)":[35],"that":[36,158,182],"utilize":[37],"one":[38],"or":[39],"more":[40],"versions":[43],"of":[44,55,87,136,185],"the":[45,63,137,192],"analyte":[46],"as":[47,62,166,168],"internal":[48],"standards.":[49],"Skyline,":[50],"an":[51,176],"open-source":[52],"software":[53],"suite":[54],"tools":[56,122],"targeted":[58],"proteomics,":[59],"has":[60],"emerged":[61],"most":[64],"widely":[65],"used":[66,98],"platform":[67],"SRM-specific":[69],"assays.":[70],"Skyline":[71,95,138,156,190],"a":[73],"freely-available,":[74],"comprehensive":[75],"tool":[76],"with":[77,120,172],"high":[78],"versatility":[79],"development":[83],"subsequent":[85],"processing":[86],"acquired":[89],"on":[90],"triple":[91],"quadrupole":[92],"spectrometers.":[94],"can":[96],"be":[97],"peptide":[100],"transition":[102],"selection,":[103],"optimization,":[105],"retention":[106],"time":[107],"scheduling,":[108],"instrument":[110],"method":[111],"export,":[112],"peak":[113],"detection/integration,":[114],"post-acquisition":[115],"signal":[116],"processing,":[117],"integration":[119],"statistical":[121,149],"algorithms":[124],"generate":[126],"quantitative":[127],"results":[128],"peptides":[130],"proteins.":[132],"To":[133],"highlight":[134],"some":[135],"functionalities,":[140],"we":[141],"describe":[142],"features":[143,157],"important":[145],"visual":[146],"displays":[147],"tools,":[150],"\u2018External":[152],"Tools\u2019.":[153],"We":[154],"discuss":[155],"are":[159],"particularly":[160],"valuable":[161],"system":[163],"suitability":[164],"assessments,":[165],"well":[167],"sets":[171],"posttranslational":[173],"modifications.":[174],"Finally,":[175],"easy,":[177],"point-and-click":[178],"strategy":[179],"presented":[181],"supports":[183],"dissemination":[184],"processed":[188],"in":[189],"Panorama":[193],"web":[194],"repositories.":[196]},"counts_by_year":[],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
