{"id":"https://openalex.org/W2551173651","doi":"https://doi.org/10.1039/9781782626732-00039","title":"Peptide Spectrum Matching <i>via</i> Database Search and Spectral Library Search","display_name":"Peptide Spectrum Matching <i>via</i> Database Search and Spectral Library Search","publication_year":2016,"publication_date":"2016-11-15","ids":{"openalex":"https://openalex.org/W2551173651","doi":"https://doi.org/10.1039/9781782626732-00039","mag":"2551173651"},"language":"en","primary_location":{"id":"doi:10.1039/9781782626732-00039","is_oa":false,"landing_page_url":"https://doi.org/10.1039/9781782626732-00039","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proteome Informatics","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5062296545","display_name":"Brian C. Netzel","orcid":null},"institutions":[{"id":"https://openalex.org/I4210125099","display_name":"Mayo Clinic in Arizona","ror":"https://ror.org/03jp40720","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210125099"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Brian Netzel","raw_affiliation_strings":["Department of Laboratory Medicine and Pathology, Mayo Clinic Rochester MN USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Laboratory Medicine and Pathology, Mayo Clinic Rochester MN USA","institution_ids":["https://openalex.org/I4210125099"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5064721834","display_name":"Surendra Dasari","orcid":"https://orcid.org/0000-0002-7972-3556"},"institutions":[{"id":"https://openalex.org/I4210146710","display_name":"Mayo Clinic in Florida","ror":"https://ror.org/03zzw1w08","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210146710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Surendra Dasari","raw_affiliation_strings":["Department of Health Sciences Research, Mayo Clinic Rochester MN USA Dasari.Surendra@mayo.edu"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Health Sciences Research, Mayo Clinic Rochester MN USA Dasari.Surendra@mayo.edu","institution_ids":["https://openalex.org/I4210146710"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.16739702,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"39","last_page":"68"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10683","display_name":"Mass Spectrometry Techniques and Applications","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/database-search-engine","display_name":"Database search engine","score":0.8731369972229004},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.6626156568527222},{"id":"https://openalex.org/keywords/matching","display_name":"Matching (statistics)","score":0.6397175788879395},{"id":"https://openalex.org/keywords/sequence-database","display_name":"Sequence database","score":0.6388979554176331},{"id":"https://openalex.org/keywords/shotgun-proteomics","display_name":"Shotgun proteomics","score":0.5878622531890869},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5799861550331116},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5508803725242615},{"id":"https://openalex.org/keywords/mascot","display_name":"Mascot","score":0.44483065605163574},{"id":"https://openalex.org/keywords/bottom-up-proteomics","display_name":"Bottom-up proteomics","score":0.43205544352531433},{"id":"https://openalex.org/keywords/proteomics","display_name":"Proteomics","score":0.4244774580001831},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.381855309009552},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3685295581817627},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3433957099914551},{"id":"https://openalex.org/keywords/search-engine","display_name":"Search engine","score":0.3275229334831238},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3073980212211609},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.21795573830604553},{"id":"https://openalex.org/keywords/mass-spectrometry","display_name":"Mass spectrometry","score":0.21435123682022095},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1792202889919281},{"id":"https://openalex.org/keywords/tandem-mass-spectrometry","display_name":"Tandem mass spectrometry","score":0.14467012882232666},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.12370431423187256},{"id":"https://openalex.org/keywords/chromatography","display_name":"Chromatography","score":0.09176686406135559},{"id":"https://openalex.org/keywords/protein-mass-spectrometry","display_name":"Protein mass spectrometry","score":0.08330971002578735}],"concepts":[{"id":"https://openalex.org/C48000682","wikidata":"https://www.wikidata.org/wiki/Q5227411","display_name":"Database search engine","level":3,"score":0.8731369972229004},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.6626156568527222},{"id":"https://openalex.org/C165064840","wikidata":"https://www.wikidata.org/wiki/Q1321061","display_name":"Matching (statistics)","level":2,"score":0.6397175788879395},{"id":"https://openalex.org/C41584329","wikidata":"https://www.wikidata.org/wiki/Q175902","display_name":"Sequence database","level":3,"score":0.6388979554176331},{"id":"https://openalex.org/C68289359","wikidata":"https://www.wikidata.org/wiki/Q7502514","display_name":"Shotgun proteomics","level":4,"score":0.5878622531890869},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5799861550331116},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5508803725242615},{"id":"https://openalex.org/C2778160393","wikidata":"https://www.wikidata.org/wiki/Q18670161","display_name":"Mascot","level":2,"score":0.44483065605163574},{"id":"https://openalex.org/C112979427","wikidata":"https://www.wikidata.org/wiki/Q4949102","display_name":"Bottom-up proteomics","level":5,"score":0.43205544352531433},{"id":"https://openalex.org/C46111723","wikidata":"https://www.wikidata.org/wiki/Q471857","display_name":"Proteomics","level":3,"score":0.4244774580001831},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.381855309009552},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3685295581817627},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3433957099914551},{"id":"https://openalex.org/C97854310","wikidata":"https://www.wikidata.org/wiki/Q19541","display_name":"Search engine","level":2,"score":0.3275229334831238},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3073980212211609},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.21795573830604553},{"id":"https://openalex.org/C162356407","wikidata":"https://www.wikidata.org/wiki/Q180809","display_name":"Mass spectrometry","level":2,"score":0.21435123682022095},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1792202889919281},{"id":"https://openalex.org/C31827203","wikidata":"https://www.wikidata.org/wiki/Q874296","display_name":"Tandem mass spectrometry","level":3,"score":0.14467012882232666},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.12370431423187256},{"id":"https://openalex.org/C43617362","wikidata":"https://www.wikidata.org/wiki/Q170050","display_name":"Chromatography","level":1,"score":0.09176686406135559},{"id":"https://openalex.org/C202157981","wikidata":"https://www.wikidata.org/wiki/Q7251488","display_name":"Protein mass spectrometry","level":4,"score":0.08330971002578735},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1039/9781782626732-00039","is_oa":false,"landing_page_url":"https://doi.org/10.1039/9781782626732-00039","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proteome Informatics","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":50,"referenced_works":["https://openalex.org/W159602724","https://openalex.org/W1944989862","https://openalex.org/W1968459892","https://openalex.org/W1972791227","https://openalex.org/W1977972652","https://openalex.org/W1981978551","https://openalex.org/W1982890491","https://openalex.org/W1985524611","https://openalex.org/W1986873950","https://openalex.org/W1990273811","https://openalex.org/W1991518289","https://openalex.org/W2007019025","https://openalex.org/W2013589890","https://openalex.org/W2020973783","https://openalex.org/W2025410982","https://openalex.org/W2026465178","https://openalex.org/W2027974246","https://openalex.org/W2028421938","https://openalex.org/W2045340003","https://openalex.org/W2049727081","https://openalex.org/W2051857883","https://openalex.org/W2053573662","https://openalex.org/W2053827324","https://openalex.org/W2055063265","https://openalex.org/W2068199476","https://openalex.org/W2069860553","https://openalex.org/W2073069615","https://openalex.org/W2073637473","https://openalex.org/W2081465448","https://openalex.org/W2082006641","https://openalex.org/W2093828656","https://openalex.org/W2107578201","https://openalex.org/W2107903949","https://openalex.org/W2110017950","https://openalex.org/W2110057023","https://openalex.org/W2111846704","https://openalex.org/W2113765377","https://openalex.org/W2114049512","https://openalex.org/W2119029832","https://openalex.org/W2119376397","https://openalex.org/W2127066954","https://openalex.org/W2130706354","https://openalex.org/W2132811240","https://openalex.org/W2132899146","https://openalex.org/W2138435204","https://openalex.org/W2146103026","https://openalex.org/W2158714788","https://openalex.org/W2161189461","https://openalex.org/W2337170947","https://openalex.org/W6606539241"],"related_works":["https://openalex.org/W2138745251","https://openalex.org/W4241471035","https://openalex.org/W4238067418","https://openalex.org/W2031764625","https://openalex.org/W2282020652","https://openalex.org/W2182041029","https://openalex.org/W2079578946","https://openalex.org/W1981801323","https://openalex.org/W1027044215","https://openalex.org/W3185282851"],"abstract_inverted_index":{"High-throughput":[0],"shotgun":[1],"proteomics":[2,125],"is":[3],"the":[4,27,35,43,59,98,124,132],"mainstay":[5],"of":[6,52,74,110,134],"protein":[7,21,53,139],"identification":[8],"in":[9,42,123],"biological":[10],"samples.":[11],"Efficient":[12],"proteomic":[13],"analysis":[14],"requires":[15],"streamlined":[16],"and":[17,30,37,55,86,121,142],"accurate":[18],"workflows":[19],"for":[20,33],"identification.":[22],"Database":[23],"searching":[24,78],"has":[25,79,117],"been":[26,80],"most":[28],"basic":[29],"reliable":[31],"workflow":[32],"identifying":[34],"peptides":[36,48,99],"proteins":[38],"that":[39],"are":[40,68],"present":[41],"sample.":[44],"This":[45,93,127],"method":[46,94,116],"derives":[47],"from":[49],"a":[50,84,108],"list":[51],"sequences":[54],"matches":[56,67],"them":[57],"against":[58],"experimental":[60,104],"MS2":[61,105,112],"spectra.":[62,114],"The":[63],"resulting":[64],"peptide":[65,113,135],"spectrum":[66,136],"scored":[69],"to":[70,89,96,107,130],"quantify":[71],"their":[72,102],"goodness":[73],"fit.":[75],"Spectral":[76],"library":[77,109,144],"recently":[81],"developed":[82],"as":[83],"fast,":[85],"viable,":[87],"alternative":[88],"sequence":[90,140],"database":[91,141],"searching.":[92,145],"attempts":[95],"identify":[97],"by":[100],"matching":[101,137],"corresponding":[103],"spectra":[106],"curated":[111],"Each":[115],"its":[118],"own":[119],"merit":[120],"application":[122],"field.":[126],"chapter":[128],"aims":[129],"highlight":[131],"foundations":[133],"via":[138],"spectral":[143]},"counts_by_year":[],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
