{"id":"https://openalex.org/W7161643129","doi":"https://doi.org/10.1038/s43588-026-00987-x","title":"Modeling context-dependent RNA splicing by deep learning","display_name":"Modeling context-dependent RNA splicing by deep learning","publication_year":2026,"publication_date":"2026-05-19","ids":{"openalex":"https://openalex.org/W7161643129","doi":"https://doi.org/10.1038/s43588-026-00987-x","pmid":"https://pubmed.ncbi.nlm.nih.gov/42156926"},"language":"en","primary_location":{"id":"doi:10.1038/s43588-026-00987-x","is_oa":false,"landing_page_url":"https://doi.org/10.1038/s43588-026-00987-x","pdf_url":null,"source":{"id":"https://openalex.org/S4210228084","display_name":"Nature Computational Science","issn_l":"2662-8457","issn":["2662-8457"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature Computational Science","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Chengxuan Chen","orcid":"https://orcid.org/0000-0002-9650-1437"},"institutions":[{"id":"https://openalex.org/I1283055418","display_name":"Indiana University Health","ror":"https://ror.org/01aaptx40","country_code":"US","type":"funder","lineage":["https://openalex.org/I1283055418","https://openalex.org/I4388446366","https://openalex.org/I592451"]},{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chengxuan Chen","raw_affiliation_strings":["Brown Center for Immunotherapy, Indiana University School of Medicine, Indianapolis, IN, USA. cc123@iu.edu","Department of Biostatistics and Health Data Science, Indiana University School of Medicine, Indianapolis, IN, USA. cc123@iu.edu"],"raw_orcid":"https://orcid.org/0000-0002-9650-1437","affiliations":[{"raw_affiliation_string":"Brown Center for Immunotherapy, Indiana University School of Medicine, Indianapolis, IN, USA. cc123@iu.edu","institution_ids":["https://openalex.org/I55769427"]},{"raw_affiliation_string":"Department of Biostatistics and Health Data Science, Indiana University School of Medicine, Indianapolis, IN, USA. cc123@iu.edu","institution_ids":["https://openalex.org/I1283055418","https://openalex.org/I55769427"]}]},{"author_position":"last","author":{"id":null,"display_name":"Leng Han","orcid":"https://orcid.org/0000-0002-7380-2640"},"institutions":[{"id":"https://openalex.org/I1283055418","display_name":"Indiana University Health","ror":"https://ror.org/01aaptx40","country_code":"US","type":"funder","lineage":["https://openalex.org/I1283055418","https://openalex.org/I4388446366","https://openalex.org/I592451"]},{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Leng Han","raw_affiliation_strings":["Brown Center for Immunotherapy, Indiana University School of Medicine, Indianapolis, IN, USA. lenghan@iu.edu","Department of Biostatistics and Health Data Science, Indiana University School of Medicine, Indianapolis, IN, USA. lenghan@iu.edu"],"raw_orcid":"https://orcid.org/0000-0002-7380-2640","affiliations":[{"raw_affiliation_string":"Brown Center for Immunotherapy, Indiana University School of Medicine, Indianapolis, IN, USA. lenghan@iu.edu","institution_ids":["https://openalex.org/I55769427"]},{"raw_affiliation_string":"Department of Biostatistics and Health Data Science, Indiana University School of Medicine, Indianapolis, IN, USA. lenghan@iu.edu","institution_ids":["https://openalex.org/I1283055418","https://openalex.org/I55769427"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":11690,"currency":"USD","value_usd":11690},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.53537483,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"6","issue":"5","first_page":"435","last_page":"436"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.6708999872207642,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.6708999872207642,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.21529999375343323,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.04050000011920929,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.689300000667572},{"id":"https://openalex.org/keywords/rna-splicing","display_name":"RNA splicing","score":0.5515999794006348},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.5139999985694885},{"id":"https://openalex.org/keywords/focus","display_name":"Focus (optics)","score":0.44670000672340393},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.3626999855041504},{"id":"https://openalex.org/keywords/alternative-splicing","display_name":"Alternative splicing","score":0.33160001039505005},{"id":"https://openalex.org/keywords/gene-isoform","display_name":"Gene isoform","score":0.3077000081539154}],"concepts":[{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.689300000667572},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5950999855995178},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5692999958992004},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5597000122070312},{"id":"https://openalex.org/C54458228","wikidata":"https://www.wikidata.org/wiki/Q237218","display_name":"RNA splicing","level":4,"score":0.5515999794006348},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.5139999985694885},{"id":"https://openalex.org/C192209626","wikidata":"https://www.wikidata.org/wiki/Q190909","display_name":"Focus (optics)","level":2,"score":0.44670000672340393},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3837999999523163},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.3626999855041504},{"id":"https://openalex.org/C194583182","wikidata":"https://www.wikidata.org/wiki/Q21114084","display_name":"Alternative splicing","level":4,"score":0.33160001039505005},{"id":"https://openalex.org/C53345823","wikidata":"https://www.wikidata.org/wiki/Q5531554","display_name":"Gene isoform","level":3,"score":0.3077000081539154},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.2955000102519989},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.2727000117301941},{"id":"https://openalex.org/C2780989783","wikidata":"https://www.wikidata.org/wiki/Q7578557","display_name":"splice","level":3,"score":0.27000001072883606},{"id":"https://openalex.org/C2778530040","wikidata":"https://www.wikidata.org/wiki/Q1937315","display_name":"Helix (gastropod)","level":3,"score":0.26649999618530273},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.26429998874664307},{"id":"https://openalex.org/C61053724","wikidata":"https://www.wikidata.org/wiki/Q1154615","display_name":"Sequence analysis","level":3,"score":0.2563999891281128}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1038/s43588-026-00987-x","is_oa":false,"landing_page_url":"https://doi.org/10.1038/s43588-026-00987-x","pdf_url":null,"source":{"id":"https://openalex.org/S4210228084","display_name":"Nature Computational Science","issn_l":"2662-8457","issn":["2662-8457"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature Computational Science","raw_type":"journal-article"},{"id":"pmid:42156926","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/42156926","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature computational science","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/2","display_name":"Zero hunger","score":0.4542669653892517}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":10,"referenced_works":["https://openalex.org/W2029979788","https://openalex.org/W2105037453","https://openalex.org/W2153833484","https://openalex.org/W2909194804","https://openalex.org/W2924070408","https://openalex.org/W3008864040","https://openalex.org/W4315475728","https://openalex.org/W4392785459","https://openalex.org/W4403072018","https://openalex.org/W7161635588"],"related_works":[],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2026-05-19T00:00:00"}
