{"id":"https://openalex.org/W4415209044","doi":"https://doi.org/10.1038/s43588-025-00830-9","title":"Interpolating perturbations across contexts","display_name":"Interpolating perturbations across contexts","publication_year":2025,"publication_date":"2025-10-15","ids":{"openalex":"https://openalex.org/W4415209044","doi":"https://doi.org/10.1038/s43588-025-00830-9","pmid":"https://pubmed.ncbi.nlm.nih.gov/41094039"},"language":"en","primary_location":{"id":"doi:10.1038/s43588-025-00830-9","is_oa":false,"landing_page_url":"https://doi.org/10.1038/s43588-025-00830-9","pdf_url":null,"source":{"id":"https://openalex.org/S4210228084","display_name":"Nature Computational Science","issn_l":"2662-8457","issn":["2662-8457"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature Computational Science","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100325113","display_name":"Han Chen","orcid":"https://orcid.org/0000-0002-1722-8736"},"institutions":[{"id":"https://openalex.org/I1321430492","display_name":"Gladstone Institutes","ror":"https://ror.org/038321296","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1321430492"]},{"id":"https://openalex.org/I4210110664","display_name":"University of California San Francisco Medical Center","ror":"https://ror.org/01t8svj65","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210110664"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Han Chen","raw_affiliation_strings":["Biological and Medical Informatics Program, University of California, San Francisco (UCSF), San Francisco, CA, USA","Gladstone Institute of Cardiovascular Disease, San Francisco, CA, USA","Gladstone Institute of Data Science and Biotechnology, San Francisco, CA, USA","Gladstone Institute of Genomic Immunology, San Francisco, CA, USA"],"affiliations":[{"raw_affiliation_string":"Biological and Medical Informatics Program, University of California, San Francisco (UCSF), San Francisco, CA, USA","institution_ids":["https://openalex.org/I4210110664"]},{"raw_affiliation_string":"Gladstone Institute of Cardiovascular Disease, San Francisco, CA, USA","institution_ids":["https://openalex.org/I1321430492"]},{"raw_affiliation_string":"Gladstone Institute of Data Science and Biotechnology, San Francisco, CA, USA","institution_ids":["https://openalex.org/I1321430492"]},{"raw_affiliation_string":"Gladstone Institute of Genomic Immunology, San Francisco, CA, USA","institution_ids":["https://openalex.org/I1321430492"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5020538019","display_name":"Christina V. Theodoris","orcid":"https://orcid.org/0000-0003-1658-1447"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Christina V. Theodoris","raw_affiliation_strings":["Biological and Medical Informatics Program, University of California, San Francisco (UCSF), San Francisco, CA, USA. christina.theodoris@gladstone.ucsf.edu","Department of Pediatrics, Institute for Human Genetics, Cardiovascular Research Institute, UCSF, San Francisco, CA, USA. christina.theodoris@gladstone.ucsf.edu","Gladstone Institute of Cardiovascular Disease, San Francisco, CA, USA. christina.theodoris@gladstone.ucsf.edu","Gladstone Institute of Data Science and Biotechnology, San Francisco, CA, USA. christina.theodoris@gladstone.ucsf.edu"],"affiliations":[{"raw_affiliation_string":"Biological and Medical Informatics Program, University of California, San Francisco (UCSF), San Francisco, CA, USA. christina.theodoris@gladstone.ucsf.edu","institution_ids":[]},{"raw_affiliation_string":"Department of Pediatrics, Institute for Human Genetics, Cardiovascular Research Institute, UCSF, San Francisco, CA, USA. christina.theodoris@gladstone.ucsf.edu","institution_ids":[]},{"raw_affiliation_string":"Gladstone Institute of Cardiovascular Disease, San Francisco, CA, USA. christina.theodoris@gladstone.ucsf.edu","institution_ids":[]},{"raw_affiliation_string":"Gladstone Institute of Data Science and Biotechnology, San Francisco, CA, USA. christina.theodoris@gladstone.ucsf.edu","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5100325113"],"corresponding_institution_ids":["https://openalex.org/I1321430492","https://openalex.org/I4210110664"],"apc_list":{"value":9750,"currency":"EUR","value_usd":11690},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.26685766,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"5","issue":"11","first_page":"992","last_page":"993"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9733999967575073,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9733999967575073,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9269000291824341,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5400999784469604},{"id":"https://openalex.org/keywords/perturbation","display_name":"Perturbation (astronomy)","score":0.46209999918937683},{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.35850000381469727},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.3197000026702881}],"concepts":[{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5400999784469604},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.46299999952316284},{"id":"https://openalex.org/C177918212","wikidata":"https://www.wikidata.org/wiki/Q803623","display_name":"Perturbation (astronomy)","level":2,"score":0.46209999918937683},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.37619999051094055},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.35850000381469727},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.35010001063346863},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.3197000026702881},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.30570000410079956},{"id":"https://openalex.org/C2781067378","wikidata":"https://www.wikidata.org/wiki/Q17027399","display_name":"Interpretability","level":2,"score":0.2581999897956848},{"id":"https://openalex.org/C121864883","wikidata":"https://www.wikidata.org/wiki/Q677916","display_name":"Statistical physics","level":1,"score":0.2547000050544739}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1038/s43588-025-00830-9","is_oa":false,"landing_page_url":"https://doi.org/10.1038/s43588-025-00830-9","pdf_url":null,"source":{"id":"https://openalex.org/S4210228084","display_name":"Nature Computational Science","issn_l":"2662-8457","issn":["2662-8457"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature Computational Science","raw_type":"journal-article"},{"id":"pmid:41094039","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41094039","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature computational science","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":6,"referenced_works":["https://openalex.org/W4375955255","https://openalex.org/W4378838672","https://openalex.org/W4385955324","https://openalex.org/W4387819650","https://openalex.org/W4392168151","https://openalex.org/W4415208962"],"related_works":[],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2026-01-13T01:12:25.745995","created_date":"2025-10-16T00:00:00"}
