{"id":"https://openalex.org/W4411829773","doi":"https://doi.org/10.1038/s43588-025-00816-7","title":"Predicting adverse drug reactions for combination pharmacotherapy with cross-scale associative learning via attention modules","display_name":"Predicting adverse drug reactions for combination pharmacotherapy with cross-scale associative learning via attention modules","publication_year":2025,"publication_date":"2025-06-30","ids":{"openalex":"https://openalex.org/W4411829773","doi":"https://doi.org/10.1038/s43588-025-00816-7","pmid":"https://pubmed.ncbi.nlm.nih.gov/40588546"},"language":"en","primary_location":{"id":"doi:10.1038/s43588-025-00816-7","is_oa":false,"landing_page_url":"https://doi.org/10.1038/s43588-025-00816-7","pdf_url":null,"source":{"id":"https://openalex.org/S4210228084","display_name":"Nature Computational Science","issn_l":"2662-8457","issn":["2662-8457"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature Computational Science","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5118727657","display_name":"Boyang Li","orcid":null},"institutions":[{"id":"https://openalex.org/I125839683","display_name":"Beijing Institute of Technology","ror":"https://ror.org/01skt4w74","country_code":"CN","type":"education","lineage":["https://openalex.org/I125839683","https://openalex.org/I890469752"]},{"id":"https://openalex.org/I4210117825","display_name":"Beijing Research Institute of Mechanical and Electrical Technology","ror":"https://ror.org/02bjnsn63","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210117825"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Boyang Li","raw_affiliation_strings":["Beijing Key Laboratory for Separation and Analysis in Biomedicine and Pharmaceuticals, Beijing Institute of Technology, Beijing, China","Beijing Key Laboratory for Separation and Analysis in Biomedicine and Pharmaceuticals, Beijing Institute of Technology, Beijing, China. boli@bit.edu.cn","School of Interdisciplinary Science, Beijing Institute of Technology, Beijing, China","School of Interdisciplinary Science, Beijing Institute of Technology, Beijing, China. boli@bit.edu.cn","School of Medical Technology, Beijing Institute of Technology, Beijing, China"],"raw_orcid":"https://orcid.org/0009-0008-1723-3827","affiliations":[{"raw_affiliation_string":"Beijing Key Laboratory for Separation and Analysis in Biomedicine and Pharmaceuticals, Beijing Institute of Technology, Beijing, China","institution_ids":["https://openalex.org/I125839683"]},{"raw_affiliation_string":"Beijing Key Laboratory for Separation and Analysis in Biomedicine and Pharmaceuticals, Beijing Institute of Technology, Beijing, China. boli@bit.edu.cn","institution_ids":["https://openalex.org/I4210117825"]},{"raw_affiliation_string":"School of Interdisciplinary Science, Beijing Institute of Technology, Beijing, China","institution_ids":["https://openalex.org/I125839683"]},{"raw_affiliation_string":"School of Interdisciplinary Science, Beijing Institute of Technology, Beijing, China. boli@bit.edu.cn","institution_ids":["https://openalex.org/I125839683"]},{"raw_affiliation_string":"School of Medical Technology, Beijing Institute of Technology, Beijing, China","institution_ids":["https://openalex.org/I125839683"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5118727658","display_name":"Yifan Qi","orcid":null},"institutions":[{"id":"https://openalex.org/I205237279","display_name":"Nankai University","ror":"https://ror.org/01y1kjr75","country_code":"CN","type":"education","lineage":["https://openalex.org/I205237279"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yifan Qi","raw_affiliation_strings":["College of Computer Science, Nankai University, Tianjin, China"],"raw_orcid":"https://orcid.org/0009-0008-5740-2832","affiliations":[{"raw_affiliation_string":"College of Computer Science, Nankai University, Tianjin, China","institution_ids":["https://openalex.org/I205237279"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064692665","display_name":"Bo Li","orcid":"https://orcid.org/0000-0001-5669-1785"},"institutions":[{"id":"https://openalex.org/I125839683","display_name":"Beijing Institute of Technology","ror":"https://ror.org/01skt4w74","country_code":"CN","type":"education","lineage":["https://openalex.org/I125839683","https://openalex.org/I890469752"]},{"id":"https://openalex.org/I4210117825","display_name":"Beijing Research Institute of Mechanical and Electrical Technology","ror":"https://ror.org/02bjnsn63","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210117825"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Bo Li","raw_affiliation_strings":["Beijing Key Laboratory for Separation and Analysis in Biomedicine and Pharmaceuticals, Beijing Institute of Technology, Beijing, China","Beijing Key Laboratory for Separation and Analysis in Biomedicine and Pharmaceuticals, Beijing Institute of Technology, Beijing, China. boli@bit.edu.cn","School of Interdisciplinary Science, Beijing Institute of Technology, Beijing, China","School of Interdisciplinary Science, Beijing Institute of Technology, Beijing, China. boli@bit.edu.cn","School of Medical Technology, Beijing Institute of Technology, Beijing, China"],"raw_orcid":"https://orcid.org/0000-0001-5669-1785","affiliations":[{"raw_affiliation_string":"Beijing Key Laboratory for Separation and Analysis in Biomedicine and Pharmaceuticals, Beijing Institute of Technology, Beijing, China","institution_ids":["https://openalex.org/I125839683"]},{"raw_affiliation_string":"Beijing Key Laboratory for Separation and Analysis in Biomedicine and Pharmaceuticals, Beijing Institute of Technology, Beijing, China. boli@bit.edu.cn","institution_ids":["https://openalex.org/I4210117825"]},{"raw_affiliation_string":"School of Interdisciplinary Science, Beijing Institute of Technology, Beijing, China","institution_ids":["https://openalex.org/I125839683"]},{"raw_affiliation_string":"School of Interdisciplinary Science, Beijing Institute of Technology, Beijing, China. boli@bit.edu.cn","institution_ids":["https://openalex.org/I125839683"]},{"raw_affiliation_string":"School of Medical Technology, Beijing Institute of Technology, Beijing, China","institution_ids":["https://openalex.org/I125839683"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5054663218","display_name":"Xiaoqiong Li","orcid":null},"institutions":[{"id":"https://openalex.org/I125839683","display_name":"Beijing Institute of Technology","ror":"https://ror.org/01skt4w74","country_code":"CN","type":"education","lineage":["https://openalex.org/I125839683","https://openalex.org/I890469752"]},{"id":"https://openalex.org/I4210136676","display_name":"National Institutes for Food and Drug Control","ror":"https://ror.org/041rdq190","country_code":"CN","type":"other","lineage":["https://openalex.org/I4210136676"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaoqiong Li","raw_affiliation_strings":["Beijing Key Laboratory for Separation and Analysis in Biomedicine and Pharmaceuticals, Beijing Institute of Technology, Beijing, China. radar551@bit.edu.cn","School of Medical Technology, Beijing Institute of Technology, Beijing, China. radar551@bit.edu.cn"],"raw_orcid":"https://orcid.org/0009-0006-9962-5351","affiliations":[{"raw_affiliation_string":"Beijing Key Laboratory for Separation and Analysis in Biomedicine and Pharmaceuticals, Beijing Institute of Technology, Beijing, China. radar551@bit.edu.cn","institution_ids":["https://openalex.org/I4210136676"]},{"raw_affiliation_string":"School of Medical Technology, Beijing Institute of Technology, Beijing, China. radar551@bit.edu.cn","institution_ids":["https://openalex.org/I125839683"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5118727657"],"corresponding_institution_ids":["https://openalex.org/I125839683","https://openalex.org/I4210117825"],"apc_list":{"value":9750,"currency":"EUR","value_usd":11690},"apc_paid":null,"fwci":1.1687,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.76552363,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":98},"biblio":{"volume":"5","issue":"7","first_page":"547","last_page":"561"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11943","display_name":"Pharmacovigilance and Adverse Drug Reactions","score":0.9731000065803528,"subfield":{"id":"https://openalex.org/subfields/3005","display_name":"Toxicology"},"field":{"id":"https://openalex.org/fields/30","display_name":"Pharmacology, Toxicology and Pharmaceutics"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11943","display_name":"Pharmacovigilance and Adverse Drug Reactions","score":0.9731000065803528,"subfield":{"id":"https://openalex.org/subfields/3005","display_name":"Toxicology"},"field":{"id":"https://openalex.org/fields/30","display_name":"Pharmacology, Toxicology and Pharmaceutics"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9697999954223633,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.9613999724388123,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pharmacotherapy","display_name":"Pharmacotherapy","score":0.6205733418464661},{"id":"https://openalex.org/keywords/associative-property","display_name":"Associative property","score":0.5764530301094055},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4207037091255188},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.28065240383148193},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.252410888671875},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.13913103938102722}],"concepts":[{"id":"https://openalex.org/C500440147","wikidata":"https://www.wikidata.org/wiki/Q701216","display_name":"Pharmacotherapy","level":2,"score":0.6205733418464661},{"id":"https://openalex.org/C159423971","wikidata":"https://www.wikidata.org/wiki/Q177251","display_name":"Associative property","level":2,"score":0.5764530301094055},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4207037091255188},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.28065240383148193},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.252410888671875},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.13913103938102722},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001245","descriptor_name":"Association Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001245","descriptor_name":"Association Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001245","descriptor_name":"Association Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001245","descriptor_name":"Association Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004359","descriptor_name":"Drug Therapy, Combination","qualifier_ui":"Q000009","qualifier_name":"adverse effects","is_major_topic":false},{"descriptor_ui":"D004359","descriptor_name":"Drug Therapy, Combination","qualifier_ui":"Q000009","qualifier_name":"adverse effects","is_major_topic":false},{"descriptor_ui":"D004359","descriptor_name":"Drug Therapy, Combination","qualifier_ui":"Q000009","qualifier_name":"adverse effects","is_major_topic":false},{"descriptor_ui":"D004359","descriptor_name":"Drug Therapy, Combination","qualifier_ui":"Q000009","qualifier_name":"adverse effects","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057285","descriptor_name":"Precision Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057285","descriptor_name":"Precision Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057285","descriptor_name":"Precision Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057285","descriptor_name":"Precision Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064420","descriptor_name":"Drug-Related Side Effects and Adverse Reactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064420","descriptor_name":"Drug-Related Side Effects and Adverse Reactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064420","descriptor_name":"Drug-Related Side Effects and Adverse Reactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064420","descriptor_name":"Drug-Related Side Effects and Adverse Reactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1038/s43588-025-00816-7","is_oa":false,"landing_page_url":"https://doi.org/10.1038/s43588-025-00816-7","pdf_url":null,"source":{"id":"https://openalex.org/S4210228084","display_name":"Nature Computational Science","issn_l":"2662-8457","issn":["2662-8457"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature Computational Science","raw_type":"journal-article"},{"id":"pmid:40588546","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40588546","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature computational science","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":50,"referenced_works":["https://openalex.org/W355643970","https://openalex.org/W613904371","https://openalex.org/W1123550655","https://openalex.org/W2000695655","https://openalex.org/W2001417231","https://openalex.org/W2007086047","https://openalex.org/W2052599165","https://openalex.org/W2060789691","https://openalex.org/W2085752173","https://openalex.org/W2119002393","https://openalex.org/W2125215013","https://openalex.org/W2143491860","https://openalex.org/W2171077151","https://openalex.org/W2173145736","https://openalex.org/W2396328566","https://openalex.org/W2515494053","https://openalex.org/W2588745445","https://openalex.org/W2786016794","https://openalex.org/W2922082445","https://openalex.org/W2949311246","https://openalex.org/W2964473213","https://openalex.org/W2971840542","https://openalex.org/W2972392269","https://openalex.org/W3017652999","https://openalex.org/W3034965860","https://openalex.org/W3089843526","https://openalex.org/W3116099552","https://openalex.org/W3139353354","https://openalex.org/W3157960714","https://openalex.org/W3205106126","https://openalex.org/W4212966936","https://openalex.org/W4281736582","https://openalex.org/W4285390610","https://openalex.org/W4287126411","https://openalex.org/W4292583032","https://openalex.org/W4318983406","https://openalex.org/W4384663928","https://openalex.org/W4386136390","https://openalex.org/W4388615774","https://openalex.org/W4388787326","https://openalex.org/W4390005328","https://openalex.org/W4393339017","https://openalex.org/W4393726599","https://openalex.org/W4396625705","https://openalex.org/W4400641244","https://openalex.org/W4400653746","https://openalex.org/W4400876473","https://openalex.org/W6839727453","https://openalex.org/W6893084441","https://openalex.org/W6930899891"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W36216555","https://openalex.org/W2390279801","https://openalex.org/W4391913857","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2122882834","https://openalex.org/W2376932109"],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":1}],"updated_date":"2026-01-13T01:12:25.745995","created_date":"2025-10-10T00:00:00"}
