{"id":"https://openalex.org/W4386099924","doi":"https://doi.org/10.1038/s43588-023-00500-8","title":"Batch-effect correction with sample remeasurement in highly confounded case-control studies","display_name":"Batch-effect correction with sample remeasurement in highly confounded case-control studies","publication_year":2023,"publication_date":"2023-08-23","ids":{"openalex":"https://openalex.org/W4386099924","doi":"https://doi.org/10.1038/s43588-023-00500-8","pmid":"https://pubmed.ncbi.nlm.nih.gov/38177326"},"language":"en","primary_location":{"id":"doi:10.1038/s43588-023-00500-8","is_oa":false,"landing_page_url":"https://doi.org/10.1038/s43588-023-00500-8","pdf_url":null,"source":{"id":"https://openalex.org/S4210228084","display_name":"Nature Computational Science","issn_l":"2662-8457","issn":["2662-8457"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature Computational Science","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10993308/pdf/nihms-1974348.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5057341013","display_name":"Hanxuan Ye","orcid":"https://orcid.org/0009-0003-1542-8683"},"institutions":[{"id":"https://openalex.org/I91045830","display_name":"Texas A&M University","ror":"https://ror.org/01f5ytq51","country_code":"US","type":"education","lineage":["https://openalex.org/I91045830"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hanxuan Ye","raw_affiliation_strings":["Department of Statistics, Texas A&M University, College Station, TX, USA","Department of Statistics, Texas A&M University, College Station, USA"],"raw_orcid":"https://orcid.org/0009-0003-1542-8683","affiliations":[{"raw_affiliation_string":"Department of Statistics, Texas A&M University, College Station, TX, USA","institution_ids":["https://openalex.org/I91045830"]},{"raw_affiliation_string":"Department of Statistics, Texas A&M University, College Station, USA","institution_ids":["https://openalex.org/I91045830"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102873564","display_name":"Xianyang Zhang","orcid":"https://orcid.org/0000-0002-2512-1816"},"institutions":[{"id":"https://openalex.org/I91045830","display_name":"Texas A&M University","ror":"https://ror.org/01f5ytq51","country_code":"US","type":"education","lineage":["https://openalex.org/I91045830"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Xianyang Zhang","raw_affiliation_strings":["Department of Statistics, Texas A&M University, College Station, TX, USA. zhangxiany@stat.tamu.edu","Department of Statistics, Texas A&M University, College Station, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Statistics, Texas A&M University, College Station, TX, USA. zhangxiany@stat.tamu.edu","institution_ids":["https://openalex.org/I91045830"]},{"raw_affiliation_string":"Department of Statistics, Texas A&M University, College Station, USA","institution_ids":["https://openalex.org/I91045830"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100337669","display_name":"Chen Wang","orcid":"https://orcid.org/0000-0003-2638-3081"},"institutions":[{"id":"https://openalex.org/I4210146710","display_name":"Mayo Clinic in Florida","ror":"https://ror.org/03zzw1w08","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210146710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chen Wang","raw_affiliation_strings":["Department of Quantitative Health Sciences, Mayo Clinic, Rochester, MN, USA","Department of Quantitative Health Sciences, Mayo Clinic, Rochester, USA"],"raw_orcid":"https://orcid.org/0000-0003-2638-3081","affiliations":[{"raw_affiliation_string":"Department of Quantitative Health Sciences, Mayo Clinic, Rochester, MN, USA","institution_ids":["https://openalex.org/I4210146710"]},{"raw_affiliation_string":"Department of Quantitative Health Sciences, Mayo Clinic, Rochester, USA","institution_ids":["https://openalex.org/I4210146710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014184022","display_name":"Ellen L. Goode","orcid":"https://orcid.org/0000-0002-9094-8326"},"institutions":[{"id":"https://openalex.org/I4210146710","display_name":"Mayo Clinic in Florida","ror":"https://ror.org/03zzw1w08","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210146710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ellen L. Goode","raw_affiliation_strings":["Department of Quantitative Health Sciences, Mayo Clinic, Rochester, MN, USA","Department of Quantitative Health Sciences, Mayo Clinic, Rochester, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Quantitative Health Sciences, Mayo Clinic, Rochester, MN, USA","institution_ids":["https://openalex.org/I4210146710"]},{"raw_affiliation_string":"Department of Quantitative Health Sciences, Mayo Clinic, Rochester, USA","institution_ids":["https://openalex.org/I4210146710"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100450167","display_name":"Jun Chen","orcid":"https://orcid.org/0000-0002-1273-5624"},"institutions":[{"id":"https://openalex.org/I4210125099","display_name":"Mayo Clinic in Arizona","ror":"https://ror.org/03jp40720","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210125099"]},{"id":"https://openalex.org/I4210146710","display_name":"Mayo Clinic in Florida","ror":"https://ror.org/03zzw1w08","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210146710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jun Chen","raw_affiliation_strings":["Department of Quantitative Health Sciences, Mayo Clinic, Rochester, MN, USA. chen.jun2@mayo.edu","Department of Quantitative Health Sciences, Mayo Clinic, Rochester, USA"],"raw_orcid":"https://orcid.org/0000-0002-1273-5624","affiliations":[{"raw_affiliation_string":"Department of Quantitative Health Sciences, Mayo Clinic, Rochester, MN, USA. chen.jun2@mayo.edu","institution_ids":["https://openalex.org/I4210146710","https://openalex.org/I4210125099"]},{"raw_affiliation_string":"Department of Quantitative Health Sciences, Mayo Clinic, Rochester, USA","institution_ids":["https://openalex.org/I4210146710"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5102873564"],"corresponding_institution_ids":["https://openalex.org/I91045830"],"apc_list":{"value":9750,"currency":"EUR","value_usd":11690},"apc_paid":null,"fwci":1.7077,"has_fulltext":true,"cited_by_count":12,"citation_normalized_percentile":{"value":0.84426554,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"3","issue":"8","first_page":"709","last_page":"719"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11235","display_name":"Statistical Methods in Clinical Trials","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/2613","display_name":"Statistics and Probability"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10136","display_name":"Statistical Methods and Inference","score":0.9900000095367432,"subfield":{"id":"https://openalex.org/subfields/2613","display_name":"Statistics and Probability"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/batch-processing","display_name":"Batch processing","score":0.6342088580131531},{"id":"https://openalex.org/keywords/sample-size-determination","display_name":"Sample size determination","score":0.5717824697494507},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5248273015022278},{"id":"https://openalex.org/keywords/sample","display_name":"Sample (material)","score":0.5051782727241516},{"id":"https://openalex.org/keywords/statistical-power","display_name":"Statistical power","score":0.47172656655311584},{"id":"https://openalex.org/keywords/statistical-analysis","display_name":"Statistical analysis","score":0.4182615280151367},{"id":"https://openalex.org/keywords/power","display_name":"Power (physics)","score":0.4108077585697174},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.3877086937427521},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.33909863233566284},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.14524942636489868},{"id":"https://openalex.org/keywords/chromatography","display_name":"Chromatography","score":0.11566275358200073}],"concepts":[{"id":"https://openalex.org/C172658912","wikidata":"https://www.wikidata.org/wiki/Q661613","display_name":"Batch processing","level":2,"score":0.6342088580131531},{"id":"https://openalex.org/C129848803","wikidata":"https://www.wikidata.org/wiki/Q2564360","display_name":"Sample size determination","level":2,"score":0.5717824697494507},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5248273015022278},{"id":"https://openalex.org/C198531522","wikidata":"https://www.wikidata.org/wiki/Q485146","display_name":"Sample (material)","level":2,"score":0.5051782727241516},{"id":"https://openalex.org/C96608239","wikidata":"https://www.wikidata.org/wiki/Q1199823","display_name":"Statistical power","level":2,"score":0.47172656655311584},{"id":"https://openalex.org/C2986587452","wikidata":"https://www.wikidata.org/wiki/Q938438","display_name":"Statistical analysis","level":2,"score":0.4182615280151367},{"id":"https://openalex.org/C163258240","wikidata":"https://www.wikidata.org/wiki/Q25342","display_name":"Power (physics)","level":2,"score":0.4108077585697174},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.3877086937427521},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.33909863233566284},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.14524942636489868},{"id":"https://openalex.org/C43617362","wikidata":"https://www.wikidata.org/wiki/Q170050","display_name":"Chromatography","level":1,"score":0.11566275358200073},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D012107","descriptor_name":"Research Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012107","descriptor_name":"Research Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012107","descriptor_name":"Research Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012107","descriptor_name":"Research Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012107","descriptor_name":"Research Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012107","descriptor_name":"Research Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012107","descriptor_name":"Research Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016022","descriptor_name":"Case-Control Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016022","descriptor_name":"Case-Control Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016022","descriptor_name":"Case-Control Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016022","descriptor_name":"Case-Control Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016022","descriptor_name":"Case-Control Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016022","descriptor_name":"Case-Control Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016022","descriptor_name":"Case-Control Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1038/s43588-023-00500-8","is_oa":false,"landing_page_url":"https://doi.org/10.1038/s43588-023-00500-8","pdf_url":null,"source":{"id":"https://openalex.org/S4210228084","display_name":"Nature Computational Science","issn_l":"2662-8457","issn":["2662-8457"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature Computational Science","raw_type":"journal-article"},{"id":"pmid:38177326","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38177326","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature computational science","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10993308","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10993308","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10993308/pdf/nihms-1974348.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nat Comput Sci","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:10993308","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10993308","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10993308/pdf/nihms-1974348.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nat Comput Sci","raw_type":"Text"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5076927470","display_name":null,"funder_award_id":"R01GM144351","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G6222647367","display_name":null,"funder_award_id":"R21HG011662","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G6563293372","display_name":null,"funder_award_id":"DMS2113359","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7826818782","display_name":null,"funder_award_id":"DMS2113360","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4386099924.pdf"},"referenced_works_count":36,"referenced_works":["https://openalex.org/W1988391018","https://openalex.org/W1999558567","https://openalex.org/W2024103316","https://openalex.org/W2038437697","https://openalex.org/W2063960748","https://openalex.org/W2096192437","https://openalex.org/W2107665951","https://openalex.org/W2116650193","https://openalex.org/W2137499573","https://openalex.org/W2138644182","https://openalex.org/W2139345901","https://openalex.org/W2148541040","https://openalex.org/W2150542002","https://openalex.org/W2166549811","https://openalex.org/W2168113705","https://openalex.org/W2169638780","https://openalex.org/W2419031536","https://openalex.org/W2506717766","https://openalex.org/W2603756957","https://openalex.org/W2736529787","https://openalex.org/W2761069142","https://openalex.org/W2783644856","https://openalex.org/W2790370540","https://openalex.org/W2809805318","https://openalex.org/W2810239069","https://openalex.org/W2860509233","https://openalex.org/W2963539537","https://openalex.org/W2973336097","https://openalex.org/W2989218561","https://openalex.org/W3023058184","https://openalex.org/W3088521497","https://openalex.org/W3102354651","https://openalex.org/W4200495952","https://openalex.org/W4299627282","https://openalex.org/W4386099924","https://openalex.org/W6963864093"],"related_works":["https://openalex.org/W4388813866","https://openalex.org/W1989415248","https://openalex.org/W2999104021","https://openalex.org/W977438452","https://openalex.org/W4293088233","https://openalex.org/W2850804095","https://openalex.org/W1481656249","https://openalex.org/W2162280767","https://openalex.org/W3041891053","https://openalex.org/W4236933217"],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":2}],"updated_date":"2026-06-13T07:54:00.901334","created_date":"2025-10-10T00:00:00"}
