{"id":"https://openalex.org/W4313430583","doi":"https://doi.org/10.1038/s43588-022-00372-4","title":"Unconstrained generation of synthetic antibody\u2013antigen structures to guide machine learning methodology for antibody specificity prediction","display_name":"Unconstrained generation of synthetic antibody\u2013antigen structures to guide machine learning methodology for antibody specificity prediction","publication_year":2022,"publication_date":"2022-12-19","ids":{"openalex":"https://openalex.org/W4313430583","doi":"https://doi.org/10.1038/s43588-022-00372-4","pmid":"https://pubmed.ncbi.nlm.nih.gov/38177393"},"language":"en","primary_location":{"id":"doi:10.1038/s43588-022-00372-4","is_oa":false,"landing_page_url":"https://doi.org/10.1038/s43588-022-00372-4","pdf_url":null,"source":{"id":"https://openalex.org/S4210228084","display_name":"Nature Computational Science","issn_l":"2662-8457","issn":["2662-8457"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature Computational Science","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5000751357","display_name":"Philippe A. Robert","orcid":"https://orcid.org/0000-0003-1345-5015"},"institutions":[{"id":"https://openalex.org/I1281400175","display_name":"Oslo University Hospital","ror":"https://ror.org/00j9c2840","country_code":"NO","type":"healthcare","lineage":["https://openalex.org/I1281400175"]},{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":true,"raw_author_name":"Philippe A. Robert","raw_affiliation_strings":["Department of Immunology, University of Oslo and Oslo University Hospital, Oslo, Norway. philippe.robert@ens-lyon.org","Department of Immunology, University of Oslo and Oslo University Hospital, Oslo, Norway"],"raw_orcid":"https://orcid.org/0000-0003-1345-5015","affiliations":[{"raw_affiliation_string":"Department of Immunology, University of Oslo and Oslo University Hospital, Oslo, Norway. philippe.robert@ens-lyon.org","institution_ids":["https://openalex.org/I1281400175"]},{"raw_affiliation_string":"Department of Immunology, University of Oslo and Oslo University Hospital, Oslo, Norway","institution_ids":["https://openalex.org/I1281400175","https://openalex.org/I184942183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017929614","display_name":"Rahmad Akbar","orcid":"https://orcid.org/0000-0002-6692-0876"},"institutions":[{"id":"https://openalex.org/I1281400175","display_name":"Oslo University Hospital","ror":"https://ror.org/00j9c2840","country_code":"NO","type":"healthcare","lineage":["https://openalex.org/I1281400175"]},{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Rahmad Akbar","raw_affiliation_strings":["Department of Immunology, University of Oslo and Oslo University Hospital, Oslo, Norway"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Immunology, University of Oslo and Oslo University Hospital, Oslo, Norway","institution_ids":["https://openalex.org/I1281400175","https://openalex.org/I184942183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063811520","display_name":"Robert Frank","orcid":"https://orcid.org/0000-0001-9097-7963"},"institutions":[{"id":"https://openalex.org/I1281400175","display_name":"Oslo University Hospital","ror":"https://ror.org/00j9c2840","country_code":"NO","type":"healthcare","lineage":["https://openalex.org/I1281400175"]},{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Robert Frank","raw_affiliation_strings":["Department of Immunology, University of Oslo and Oslo University Hospital, Oslo, Norway"],"raw_orcid":"https://orcid.org/0000-0001-9097-7963","affiliations":[{"raw_affiliation_string":"Department of Immunology, University of Oslo and Oslo University Hospital, Oslo, Norway","institution_ids":["https://openalex.org/I1281400175","https://openalex.org/I184942183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037853098","display_name":"Milena Pavlovi\u0107","orcid":"https://orcid.org/0000-0002-2484-3868"},"institutions":[{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Milena Pavlovi\u0107","raw_affiliation_strings":["Department of Informatics, University of Oslo, Oslo, Norway"],"raw_orcid":"https://orcid.org/0000-0002-2484-3868","affiliations":[{"raw_affiliation_string":"Department of Informatics, University of Oslo, Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019119934","display_name":"Michael Widrich","orcid":"https://orcid.org/0000-0002-5721-0135"},"institutions":[{"id":"https://openalex.org/I121883995","display_name":"Johannes Kepler University of Linz","ror":"https://ror.org/052r2xn60","country_code":"AT","type":"education","lineage":["https://openalex.org/I121883995"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Michael Widrich","raw_affiliation_strings":["ELLIS Unit Linz and LIT AI Lab, Institute for Machine Learning, Johannes Kepler University Linz, Linz, Austria"],"raw_orcid":"https://orcid.org/0000-0002-5721-0135","affiliations":[{"raw_affiliation_string":"ELLIS Unit Linz and LIT AI Lab, Institute for Machine Learning, Johannes Kepler University Linz, Linz, Austria","institution_ids":["https://openalex.org/I121883995"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031331381","display_name":"Igor Snapkov","orcid":"https://orcid.org/0000-0001-5341-685X"},"institutions":[{"id":"https://openalex.org/I1281400175","display_name":"Oslo University Hospital","ror":"https://ror.org/00j9c2840","country_code":"NO","type":"healthcare","lineage":["https://openalex.org/I1281400175"]},{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Igor Snapkov","raw_affiliation_strings":["Department of Immunology, University of Oslo and Oslo University Hospital, Oslo, Norway"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Immunology, University of Oslo and Oslo University Hospital, Oslo, Norway","institution_ids":["https://openalex.org/I1281400175","https://openalex.org/I184942183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078710067","display_name":"Andrei Slabodkin","orcid":"https://orcid.org/0000-0002-9320-1666"},"institutions":[{"id":"https://openalex.org/I1281400175","display_name":"Oslo University Hospital","ror":"https://ror.org/00j9c2840","country_code":"NO","type":"healthcare","lineage":["https://openalex.org/I1281400175"]},{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Andrei Slabodkin","raw_affiliation_strings":["Department of Immunology, University of Oslo and Oslo University Hospital, Oslo, Norway"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Immunology, University of Oslo and Oslo University Hospital, Oslo, Norway","institution_ids":["https://openalex.org/I1281400175","https://openalex.org/I184942183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069976250","display_name":"Maria Chernigovskaya","orcid":"https://orcid.org/0000-0002-1507-4171"},"institutions":[{"id":"https://openalex.org/I1281400175","display_name":"Oslo University Hospital","ror":"https://ror.org/00j9c2840","country_code":"NO","type":"healthcare","lineage":["https://openalex.org/I1281400175"]},{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Maria Chernigovskaya","raw_affiliation_strings":["Department of Immunology, University of Oslo and Oslo University Hospital, Oslo, Norway"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Immunology, University of Oslo and Oslo University Hospital, Oslo, Norway","institution_ids":["https://openalex.org/I1281400175","https://openalex.org/I184942183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088612281","display_name":"Lonneke Scheffer","orcid":"https://orcid.org/0000-0001-8900-075X"},"institutions":[{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Lonneke Scheffer","raw_affiliation_strings":["Department of Informatics, University of Oslo, Oslo, Norway"],"raw_orcid":"https://orcid.org/0000-0001-8900-075X","affiliations":[{"raw_affiliation_string":"Department of Informatics, University of Oslo, Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044115910","display_name":"Eva Smorodina","orcid":"https://orcid.org/0000-0002-5457-5163"},"institutions":[{"id":"https://openalex.org/I1281400175","display_name":"Oslo University Hospital","ror":"https://ror.org/00j9c2840","country_code":"NO","type":"healthcare","lineage":["https://openalex.org/I1281400175"]},{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Eva Smorodina","raw_affiliation_strings":["Department of Immunology, University of Oslo and Oslo University Hospital, Oslo, Norway"],"raw_orcid":"https://orcid.org/0000-0002-5457-5163","affiliations":[{"raw_affiliation_string":"Department of Immunology, University of Oslo and Oslo University Hospital, Oslo, Norway","institution_ids":["https://openalex.org/I1281400175","https://openalex.org/I184942183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051850545","display_name":"Puneet Rawat","orcid":"https://orcid.org/0000-0002-3822-8081"},"institutions":[{"id":"https://openalex.org/I1281400175","display_name":"Oslo University Hospital","ror":"https://ror.org/00j9c2840","country_code":"NO","type":"healthcare","lineage":["https://openalex.org/I1281400175"]},{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Puneet Rawat","raw_affiliation_strings":["Department of Immunology, University of Oslo and Oslo University Hospital, Oslo, Norway"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Immunology, University of Oslo and Oslo University Hospital, Oslo, Norway","institution_ids":["https://openalex.org/I1281400175","https://openalex.org/I184942183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071965180","display_name":"Brij Bhushan Mehta","orcid":"https://orcid.org/0000-0002-8501-7076"},"institutions":[{"id":"https://openalex.org/I1281400175","display_name":"Oslo University Hospital","ror":"https://ror.org/00j9c2840","country_code":"NO","type":"healthcare","lineage":["https://openalex.org/I1281400175"]},{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Brij Bhushan Mehta","raw_affiliation_strings":["Department of Immunology, University of Oslo and Oslo University Hospital, Oslo, Norway"],"raw_orcid":"https://orcid.org/0000-0002-8501-7076","affiliations":[{"raw_affiliation_string":"Department of Immunology, University of Oslo and Oslo University Hospital, Oslo, Norway","institution_ids":["https://openalex.org/I1281400175","https://openalex.org/I184942183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078756035","display_name":"Mai Ha Vu","orcid":"https://orcid.org/0000-0002-9702-226X"},"institutions":[{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Mai Ha Vu","raw_affiliation_strings":["Department of Linguistics and Scandinavian Studies, University of Oslo, Oslo, Norway"],"raw_orcid":"https://orcid.org/0000-0002-9702-226X","affiliations":[{"raw_affiliation_string":"Department of Linguistics and Scandinavian Studies, University of Oslo, Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067084498","display_name":"Ingvild Fr\u00f8berg Mathisen","orcid":"https://orcid.org/0000-0001-6799-8504"},"institutions":[{"id":"https://openalex.org/I1281400175","display_name":"Oslo University Hospital","ror":"https://ror.org/00j9c2840","country_code":"NO","type":"healthcare","lineage":["https://openalex.org/I1281400175"]},{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Ingvild Fr\u00f8berg Mathisen","raw_affiliation_strings":["Department of Immunology, University of Oslo and Oslo University Hospital, Oslo, Norway"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Immunology, University of Oslo and Oslo University Hospital, Oslo, Norway","institution_ids":["https://openalex.org/I1281400175","https://openalex.org/I184942183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113072885","display_name":"Aur\u00e9l Pr\u00f3sz","orcid":null},"institutions":[{"id":"https://openalex.org/I4210148920","display_name":"Danish Cancer Society","ror":"https://ror.org/03ytt7k16","country_code":"DK","type":"nonprofit","lineage":["https://openalex.org/I4210148920"]}],"countries":["DK"],"is_corresponding":false,"raw_author_name":"Aur\u00e9l Pr\u00f3sz","raw_affiliation_strings":["Danish Cancer Society Research Center, Translational Cancer Genomics, Copenhagen, Denmark"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Danish Cancer Society Research Center, Translational Cancer Genomics, Copenhagen, Denmark","institution_ids":["https://openalex.org/I4210148920"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050251220","display_name":"Krzysztof Jan Abram","orcid":null},"institutions":[{"id":"https://openalex.org/I2801134892","display_name":"Novo Nordisk Foundation","ror":"https://ror.org/04txyc737","country_code":"DK","type":"facility","lineage":["https://openalex.org/I2801134892"]},{"id":"https://openalex.org/I83467386","display_name":"IT University of Copenhagen","ror":"https://ror.org/02309jg23","country_code":"DK","type":"education","lineage":["https://openalex.org/I83467386"]}],"countries":["DK"],"is_corresponding":false,"raw_author_name":"Krzysztof Abram","raw_affiliation_strings":["The Novo Nordisk Foundation Center for Biosustainability, Autoflow, DTU Biosustain and IT University of Copenhagen, Copenhagen, Denmark"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Novo Nordisk Foundation Center for Biosustainability, Autoflow, DTU Biosustain and IT University of Copenhagen, Copenhagen, Denmark","institution_ids":["https://openalex.org/I2801134892","https://openalex.org/I83467386"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069402219","display_name":"Alex Olar","orcid":"https://orcid.org/0000-0001-8094-4324"},"institutions":[{"id":"https://openalex.org/I106118109","display_name":"E\u00f6tv\u00f6s Lor\u00e1nd University","ror":"https://ror.org/01jsq2704","country_code":"HU","type":"education","lineage":["https://openalex.org/I106118109"]}],"countries":["HU"],"is_corresponding":false,"raw_author_name":"Alex Olar","raw_affiliation_strings":["Department of Complex Systems in Physics, E\u00f6tv\u00f6s Lor\u00e1nd University, Budapest, Hungary"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Complex Systems in Physics, E\u00f6tv\u00f6s Lor\u00e1nd University, Budapest, Hungary","institution_ids":["https://openalex.org/I106118109"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072624261","display_name":"Enkelejda Miho","orcid":"https://orcid.org/0000-0001-6461-0519"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I2972652528","display_name":"FHNW University of Applied Sciences and Arts","ror":"https://ror.org/04mq2g308","country_code":"CH","type":"education","lineage":["https://openalex.org/I2972652528"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Enkelejda Miho","raw_affiliation_strings":["Institute of Medical Engineering and Medical Informatics, School of Life Sciences, FHNW University of Applied Sciences and Arts Northwestern Switzerland, Muttenz, Switzerland","Swiss Institute of Bioinformatics, Lausanne, Switzerland","aiNET GmbH, Basel, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Medical Engineering and Medical Informatics, School of Life Sciences, FHNW University of Applied Sciences and Arts Northwestern Switzerland, Muttenz, Switzerland","institution_ids":["https://openalex.org/I2972652528"]},{"raw_affiliation_string":"Swiss Institute of Bioinformatics, Lausanne, Switzerland","institution_ids":["https://openalex.org/I12708293"]},{"raw_affiliation_string":"aiNET GmbH, Basel, Switzerland","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051707096","display_name":"Dag Trygve Tryslew Haug","orcid":null},"institutions":[{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Dag Trygve Tryslew Haug","raw_affiliation_strings":["Department of Linguistics and Scandinavian Studies, University of Oslo, Oslo, Norway"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Linguistics and Scandinavian Studies, University of Oslo, Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018839831","display_name":"Fridtjof Lund\u2010Johansen","orcid":"https://orcid.org/0000-0002-2445-1258"},"institutions":[{"id":"https://openalex.org/I1281400175","display_name":"Oslo University Hospital","ror":"https://ror.org/00j9c2840","country_code":"NO","type":"healthcare","lineage":["https://openalex.org/I1281400175"]},{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Fridtjof Lund-Johansen","raw_affiliation_strings":["Department of Immunology, University of Oslo and Oslo University Hospital, Oslo, Norway"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Immunology, University of Oslo and Oslo University Hospital, Oslo, Norway","institution_ids":["https://openalex.org/I1281400175","https://openalex.org/I184942183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053148274","display_name":"Sepp Hochreiter","orcid":"https://orcid.org/0000-0001-7449-2528"},"institutions":[{"id":"https://openalex.org/I121883995","display_name":"Johannes Kepler University of Linz","ror":"https://ror.org/052r2xn60","country_code":"AT","type":"education","lineage":["https://openalex.org/I121883995"]},{"id":"https://openalex.org/I161878677","display_name":"Austrian Research Institute for Artificial Intelligence","ror":"https://ror.org/04j47vk14","country_code":"AT","type":"facility","lineage":["https://openalex.org/I161878677","https://openalex.org/I4210107880"]},{"id":"https://openalex.org/I4210157875","display_name":"Institute of Advanced Research in Artificial Intelligence","ror":"https://ror.org/04m8gxe14","country_code":"AT","type":"facility","lineage":["https://openalex.org/I4210157875"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Sepp Hochreiter","raw_affiliation_strings":["ELLIS Unit Linz and LIT AI Lab, Institute for Machine Learning, Johannes Kepler University Linz, Linz, Austria","Institute of Advanced Research in Artificial Intelligence (IARAI), Vienna, Austria"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"ELLIS Unit Linz and LIT AI Lab, Institute for Machine Learning, Johannes Kepler University Linz, Linz, Austria","institution_ids":["https://openalex.org/I121883995"]},{"raw_affiliation_string":"Institute of Advanced Research in Artificial Intelligence (IARAI), Vienna, Austria","institution_ids":["https://openalex.org/I161878677","https://openalex.org/I4210157875"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011273156","display_name":"Ingrid Hob\u00e6k Haff","orcid":null},"institutions":[{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Ingrid Hob\u00e6k Haff","raw_affiliation_strings":["Department of Mathematics, University of Oslo, Oslo, Norway"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mathematics, University of Oslo, Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079632405","display_name":"G\u00fcnter Klambauer","orcid":"https://orcid.org/0000-0003-2861-5552"},"institutions":[{"id":"https://openalex.org/I121883995","display_name":"Johannes Kepler University of Linz","ror":"https://ror.org/052r2xn60","country_code":"AT","type":"education","lineage":["https://openalex.org/I121883995"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"G\u00fcnter Klambauer","raw_affiliation_strings":["ELLIS Unit Linz and LIT AI Lab, Institute for Machine Learning, Johannes Kepler University Linz, Linz, Austria"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"ELLIS Unit Linz and LIT AI Lab, Institute for Machine Learning, Johannes Kepler University Linz, Linz, Austria","institution_ids":["https://openalex.org/I121883995"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054500587","display_name":"Geir Kjetil Sandve","orcid":"https://orcid.org/0000-0002-4959-1409"},"institutions":[{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Geir Kjetil Sandve","raw_affiliation_strings":["Department of Informatics, University of Oslo, Oslo, Norway"],"raw_orcid":"https://orcid.org/0000-0002-4959-1409","affiliations":[{"raw_affiliation_string":"Department of Informatics, University of Oslo, Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5089158926","display_name":"Victor Greiff","orcid":"https://orcid.org/0000-0003-2622-5032"},"institutions":[{"id":"https://openalex.org/I1281400175","display_name":"Oslo University Hospital","ror":"https://ror.org/00j9c2840","country_code":"NO","type":"healthcare","lineage":["https://openalex.org/I1281400175"]},{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Victor Greiff","raw_affiliation_strings":["Department of Immunology, University of Oslo and Oslo University Hospital, Oslo, Norway. victor.greiff@medisin.uio.no","Department of Immunology, University of Oslo and Oslo University Hospital, Oslo, Norway"],"raw_orcid":"https://orcid.org/0000-0003-2622-5032","affiliations":[{"raw_affiliation_string":"Department of Immunology, University of Oslo and Oslo University Hospital, Oslo, Norway. victor.greiff@medisin.uio.no","institution_ids":["https://openalex.org/I1281400175"]},{"raw_affiliation_string":"Department of Immunology, University of Oslo and Oslo University Hospital, Oslo, Norway","institution_ids":["https://openalex.org/I1281400175","https://openalex.org/I184942183"]}]}],"institutions":[],"countries_distinct_count":5,"institutions_distinct_count":25,"corresponding_author_ids":["https://openalex.org/A5000751357"],"corresponding_institution_ids":["https://openalex.org/I1281400175","https://openalex.org/I184942183"],"apc_list":{"value":9750,"currency":"EUR","value_usd":11690},"apc_paid":null,"fwci":7.652,"has_fulltext":false,"cited_by_count":55,"citation_normalized_percentile":{"value":0.9822169,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"2","issue":"12","first_page":"845","last_page":"865"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10602","display_name":"Glycosylation and Glycoproteins Research","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/benchmarking","display_name":"Benchmarking","score":0.8024094104766846},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7083142399787903},{"id":"https://openalex.org/keywords/unavailability","display_name":"Unavailability","score":0.6631559133529663},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.635064423084259},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.5893741250038147},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5690358877182007},{"id":"https://openalex.org/keywords/paratope","display_name":"Paratope","score":0.5573291182518005},{"id":"https://openalex.org/keywords/epitope","display_name":"Epitope","score":0.45525866746902466},{"id":"https://openalex.org/keywords/antibody","display_name":"Antibody","score":0.3941843509674072},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3343525528907776},{"id":"https://openalex.org/keywords/immunology","display_name":"Immunology","score":0.10778969526290894},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.10505986213684082},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.10323083400726318}],"concepts":[{"id":"https://openalex.org/C86251818","wikidata":"https://www.wikidata.org/wiki/Q816754","display_name":"Benchmarking","level":2,"score":0.8024094104766846},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7083142399787903},{"id":"https://openalex.org/C2780505938","wikidata":"https://www.wikidata.org/wiki/Q17093282","display_name":"Unavailability","level":2,"score":0.6631559133529663},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.635064423084259},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.5893741250038147},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5690358877182007},{"id":"https://openalex.org/C9086966","wikidata":"https://www.wikidata.org/wiki/Q489135","display_name":"Paratope","level":4,"score":0.5573291182518005},{"id":"https://openalex.org/C195616568","wikidata":"https://www.wikidata.org/wiki/Q128711","display_name":"Epitope","level":3,"score":0.45525866746902466},{"id":"https://openalex.org/C159654299","wikidata":"https://www.wikidata.org/wiki/Q79460","display_name":"Antibody","level":2,"score":0.3941843509674072},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3343525528907776},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.10778969526290894},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.10505986213684082},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.10323083400726318},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C200601418","wikidata":"https://www.wikidata.org/wiki/Q2193887","display_name":"Reliability engineering","level":1,"score":0.0},{"id":"https://openalex.org/C162853370","wikidata":"https://www.wikidata.org/wiki/Q39809","display_name":"Marketing","level":1,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C144133560","wikidata":"https://www.wikidata.org/wiki/Q4830453","display_name":"Business","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000918","descriptor_name":"Antibody Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000918","descriptor_name":"Antibody Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000918","descriptor_name":"Antibody Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000918","descriptor_name":"Antibody Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000918","descriptor_name":"Antibody Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000937","descriptor_name":"Antigen-Antibody Reactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000937","descriptor_name":"Antigen-Antibody Reactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000937","descriptor_name":"Antigen-Antibody Reactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000937","descriptor_name":"Antigen-Antibody Reactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000937","descriptor_name":"Antigen-Antibody Reactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1038/s43588-022-00372-4","is_oa":false,"landing_page_url":"https://doi.org/10.1038/s43588-022-00372-4","pdf_url":null,"source":{"id":"https://openalex.org/S4210228084","display_name":"Nature Computational Science","issn_l":"2662-8457","issn":["2662-8457"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature Computational Science","raw_type":"journal-article"},{"id":"pmid:38177393","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38177393","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature computational science","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/2","display_name":"Zero hunger","score":0.4300000071525574}],"awards":[{"id":"https://openalex.org/G142609744","display_name":null,"funder_award_id":"iReceptorplus #825821","funder_id":"https://openalex.org/F4320332999","funder_display_name":"Horizon 2020 Framework Programme"},{"id":"https://openalex.org/G3797822967","display_name":null,"funder_award_id":"#2019PG-T1D011","funder_id":"https://openalex.org/F4320309446","funder_display_name":"Leona M. and Harry B. Helmsley Charitable Trust"},{"id":"https://openalex.org/G5123771380","display_name":null,"funder_award_id":"IKTPLUSS #311341","funder_id":"https://openalex.org/F4320323299","funder_display_name":"Norges Forskningsr\u00e5d"},{"id":"https://openalex.org/G6423542636","display_name":null,"funder_award_id":"FRIPRO #300740","funder_id":"https://openalex.org/F4320323299","funder_display_name":"Norges Forskningsr\u00e5d"},{"id":"https://openalex.org/G7338903592","display_name":null,"funder_award_id":"#311341 IKTPLUSS","funder_id":"https://openalex.org/F4320323299","funder_display_name":"Norges Forskningsr\u00e5d"},{"id":"https://openalex.org/G899624927","display_name":null,"funder_award_id":"#215817","funder_id":"https://openalex.org/F4320310758","funder_display_name":"Kreftforeningen"}],"funders":[{"id":"https://openalex.org/F4320309446","display_name":"Leona M. and Harry B. Helmsley Charitable Trust","ror":"https://ror.org/011x6n313"},{"id":"https://openalex.org/F4320310082","display_name":"Stiftelsen Kristian Gerhard Jebsen","ror":"https://ror.org/021g6tq38"},{"id":"https://openalex.org/F4320310758","display_name":"Kreftforeningen","ror":"https://ror.org/01925vb10"},{"id":"https://openalex.org/F4320323299","display_name":"Norges Forskningsr\u00e5d","ror":"https://ror.org/00epmv149"},{"id":"https://openalex.org/F4320332999","display_name":"Horizon 2020 Framework Programme","ror":"https://ror.org/00k4n6c32"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":111,"referenced_works":["https://openalex.org/W1423495995","https://openalex.org/W1902237438","https://openalex.org/W1970594638","https://openalex.org/W1974043467","https://openalex.org/W1976801077","https://openalex.org/W1988966248","https://openalex.org/W1993476635","https://openalex.org/W1994272924","https://openalex.org/W2011301426","https://openalex.org/W2021102663","https://openalex.org/W2031616673","https://openalex.org/W2068211846","https://openalex.org/W2068745408","https://openalex.org/W2091477384","https://openalex.org/W2110505462","https://openalex.org/W2116680866","https://openalex.org/W2132580736","https://openalex.org/W2150884352","https://openalex.org/W2170505850","https://openalex.org/W2294997006","https://openalex.org/W2400041270","https://openalex.org/W2401610261","https://openalex.org/W2474661075","https://openalex.org/W2509135402","https://openalex.org/W2581517068","https://openalex.org/W2583907533","https://openalex.org/W2585432610","https://openalex.org/W2588930849","https://openalex.org/W2588994591","https://openalex.org/W2616207459","https://openalex.org/W2617590156","https://openalex.org/W2737196618","https://openalex.org/W2755074069","https://openalex.org/W2790689931","https://openalex.org/W2801127413","https://openalex.org/W2801965704","https://openalex.org/W2803872300","https://openalex.org/W2804969359","https://openalex.org/W2808491442","https://openalex.org/W2896148359","https://openalex.org/W2900437486","https://openalex.org/W2901312940","https://openalex.org/W2906876006","https://openalex.org/W2911680756","https://openalex.org/W2917097596","https://openalex.org/W2926687552","https://openalex.org/W2936698572","https://openalex.org/W2943495267","https://openalex.org/W2952317511","https://openalex.org/W2952811294","https://openalex.org/W2953436574","https://openalex.org/W2967606876","https://openalex.org/W2970971581","https://openalex.org/W2980681402","https://openalex.org/W2983012520","https://openalex.org/W2986713177","https://openalex.org/W2990497243","https://openalex.org/W2992752586","https://openalex.org/W2999958881","https://openalex.org/W3005494427","https://openalex.org/W3007865917","https://openalex.org/W3011701994","https://openalex.org/W3015572436","https://openalex.org/W3016492430","https://openalex.org/W3048258966","https://openalex.org/W3049166744","https://openalex.org/W3080758869","https://openalex.org/W3092631057","https://openalex.org/W3095930322","https://openalex.org/W3101138461","https://openalex.org/W3102583847","https://openalex.org/W3113525558","https://openalex.org/W3116323439","https://openalex.org/W3122210777","https://openalex.org/W3125782153","https://openalex.org/W3132323068","https://openalex.org/W3135535143","https://openalex.org/W3138783506","https://openalex.org/W3143916713","https://openalex.org/W3146135000","https://openalex.org/W3146944767","https://openalex.org/W3150635270","https://openalex.org/W3153576498","https://openalex.org/W3156522942","https://openalex.org/W3164228670","https://openalex.org/W3165067450","https://openalex.org/W3177571920","https://openalex.org/W3194642052","https://openalex.org/W3197596721","https://openalex.org/W3217269327","https://openalex.org/W4200413006","https://openalex.org/W4200425120","https://openalex.org/W4206566734","https://openalex.org/W4214902164","https://openalex.org/W4220959747","https://openalex.org/W4220986112","https://openalex.org/W4221140570","https://openalex.org/W4225621975","https://openalex.org/W4225693775","https://openalex.org/W4226108318","https://openalex.org/W4230096730","https://openalex.org/W4285303556","https://openalex.org/W4285392187","https://openalex.org/W4294956060","https://openalex.org/W4308100272","https://openalex.org/W6675354045","https://openalex.org/W6676541936","https://openalex.org/W6733561612","https://openalex.org/W6739901393","https://openalex.org/W6903331170","https://openalex.org/W6950227276"],"related_works":["https://openalex.org/W2972990938","https://openalex.org/W2100617793","https://openalex.org/W4399363378","https://openalex.org/W2037745559","https://openalex.org/W4210635245","https://openalex.org/W2103053267","https://openalex.org/W2521166570","https://openalex.org/W4250653039","https://openalex.org/W4283010788","https://openalex.org/W4241393631"],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":19},{"year":2024,"cited_by_count":12},{"year":2023,"cited_by_count":17},{"year":2022,"cited_by_count":5}],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}
