{"id":"https://openalex.org/W3164465449","doi":"https://doi.org/10.1038/s43588-021-00073-4","title":"Time- and memory-efficient genome assembly with Raven","display_name":"Time- and memory-efficient genome assembly with Raven","publication_year":2021,"publication_date":"2021-05-20","ids":{"openalex":"https://openalex.org/W3164465449","doi":"https://doi.org/10.1038/s43588-021-00073-4","mag":"3164465449","pmid":"https://pubmed.ncbi.nlm.nih.gov/38217213"},"language":"en","primary_location":{"id":"doi:10.1038/s43588-021-00073-4","is_oa":false,"landing_page_url":"https://doi.org/10.1038/s43588-021-00073-4","pdf_url":null,"source":{"id":"https://openalex.org/S4210228084","display_name":"Nature Computational Science","issn_l":"2662-8457","issn":["2662-8457"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature Computational Science","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5009347511","display_name":"Robert Vaser","orcid":"https://orcid.org/0000-0002-8717-5414"},"institutions":[{"id":"https://openalex.org/I115228651","display_name":"Agency for Science, Technology and Research","ror":"https://ror.org/036wvzt09","country_code":"SG","type":"government","lineage":["https://openalex.org/I115228651"]},{"id":"https://openalex.org/I181343428","display_name":"University of Zagreb","ror":"https://ror.org/00mv6sv71","country_code":"HR","type":"education","lineage":["https://openalex.org/I181343428"]},{"id":"https://openalex.org/I66068411","display_name":"Genome Institute of Singapore","ror":"https://ror.org/05k8wg936","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I2801752549","https://openalex.org/I66068411"]}],"countries":["HR","SG"],"is_corresponding":true,"raw_author_name":"Robert Vaser","raw_affiliation_strings":["Laboratory for Bioinformatics and Computational Biology, Faculty of Electrical Engineering and Computing, University of Zagreb, Zagreb, Croatia","Laboratory of AI in Genomics, Genome Institute of Singapore, A*STAR, Singapore, Singapore"],"raw_orcid":"https://orcid.org/0000-0002-8717-5414","affiliations":[{"raw_affiliation_string":"Laboratory for Bioinformatics and Computational Biology, Faculty of Electrical Engineering and Computing, University of Zagreb, Zagreb, Croatia","institution_ids":["https://openalex.org/I181343428"]},{"raw_affiliation_string":"Laboratory of AI in Genomics, Genome Institute of Singapore, A*STAR, Singapore, Singapore","institution_ids":["https://openalex.org/I66068411","https://openalex.org/I115228651"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5000633958","display_name":"Mile \u0160iki\u0107","orcid":"https://orcid.org/0000-0002-8370-0891"},"institutions":[{"id":"https://openalex.org/I181343428","display_name":"University of Zagreb","ror":"https://ror.org/00mv6sv71","country_code":"HR","type":"education","lineage":["https://openalex.org/I181343428"]},{"id":"https://openalex.org/I66068411","display_name":"Genome Institute of Singapore","ror":"https://ror.org/05k8wg936","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I2801752549","https://openalex.org/I66068411"]}],"countries":["HR","SG"],"is_corresponding":false,"raw_author_name":"Mile \u0160iki\u0107","raw_affiliation_strings":["Laboratory for Bioinformatics and Computational Biology, Faculty of Electrical Engineering and Computing, University of Zagreb, Zagreb, Croatia. mile_sikic@gis.a-star.edu.sg","Laboratory of AI in Genomics, Genome Institute of Singapore, A*STAR, Singapore, Singapore. mile_sikic@gis.a-star.edu.sg","Laboratory for Bioinformatics and Computational Biology, Faculty of Electrical Engineering and Computing, University of Zagreb, Zagreb, Croatia"],"raw_orcid":"https://orcid.org/0000-0002-8370-0891","affiliations":[{"raw_affiliation_string":"Laboratory for Bioinformatics and Computational Biology, Faculty of Electrical Engineering and Computing, University of Zagreb, Zagreb, Croatia. mile_sikic@gis.a-star.edu.sg","institution_ids":["https://openalex.org/I181343428"]},{"raw_affiliation_string":"Laboratory of AI in Genomics, Genome Institute of Singapore, A*STAR, Singapore, Singapore. mile_sikic@gis.a-star.edu.sg","institution_ids":["https://openalex.org/I66068411"]},{"raw_affiliation_string":"Laboratory for Bioinformatics and Computational Biology, Faculty of Electrical Engineering and Computing, University of Zagreb, Zagreb, Croatia","institution_ids":["https://openalex.org/I181343428"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5009347511"],"corresponding_institution_ids":["https://openalex.org/I115228651","https://openalex.org/I181343428","https://openalex.org/I66068411"],"apc_list":{"value":9750,"currency":"EUR","value_usd":11690},"apc_paid":null,"fwci":25.8132,"has_fulltext":false,"cited_by_count":481,"citation_normalized_percentile":{"value":0.99827942,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"1","issue":"5","first_page":"332","last_page":"336"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9864000082015991,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9779000282287598,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/image-stitching","display_name":"Image stitching","score":0.6571176052093506},{"id":"https://openalex.org/keywords/sequence-assembly","display_name":"Sequence assembly","score":0.6393497586250305},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.6392859816551208},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5724443197250366},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.5605291724205017},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4899365305900574},{"id":"https://openalex.org/keywords/reference-genome","display_name":"Reference genome","score":0.4129929542541504},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.36099356412887573},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.28138402104377747},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.23848938941955566},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2269270122051239},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.21335139870643616}],"concepts":[{"id":"https://openalex.org/C29081049","wikidata":"https://www.wikidata.org/wiki/Q1364242","display_name":"Image stitching","level":2,"score":0.6571176052093506},{"id":"https://openalex.org/C18949551","wikidata":"https://www.wikidata.org/wiki/Q740578","display_name":"Sequence assembly","level":5,"score":0.6393497586250305},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.6392859816551208},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5724443197250366},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.5605291724205017},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4899365305900574},{"id":"https://openalex.org/C192953774","wikidata":"https://www.wikidata.org/wiki/Q7307127","display_name":"Reference genome","level":4,"score":0.4129929542541504},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.36099356412887573},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.28138402104377747},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.23848938941955566},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2269270122051239},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.21335139870643616},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1038/s43588-021-00073-4","is_oa":false,"landing_page_url":"https://doi.org/10.1038/s43588-021-00073-4","pdf_url":null,"source":{"id":"https://openalex.org/S4210228084","display_name":"Nature Computational Science","issn_l":"2662-8457","issn":["2662-8457"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature Computational Science","raw_type":"journal-article"},{"id":"pmid:38217213","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38217213","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature computational science","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4100563467","display_name":null,"funder_award_id":"KK.01.1.1.01.0009","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"},{"id":"https://openalex.org/G7111923813","display_name":null,"funder_award_id":"IP-2018-01-5886","funder_id":"https://openalex.org/F4320322674","funder_display_name":"Hrvatska Zaklada za Znanost"}],"funders":[{"id":"https://openalex.org/F4320322674","display_name":"Hrvatska Zaklada za Znanost","ror":"https://ror.org/03n51vw80"},{"id":"https://openalex.org/F4320335322","display_name":"European Regional Development Fund","ror":"https://ror.org/00k4n6c32"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":32,"referenced_works":["https://openalex.org/W2055043387","https://openalex.org/W2068306188","https://openalex.org/W2103441770","https://openalex.org/W2132069633","https://openalex.org/W2155628349","https://openalex.org/W2167482691","https://openalex.org/W2194172909","https://openalex.org/W2538143681","https://openalex.org/W2575750030","https://openalex.org/W2585955926","https://openalex.org/W2607669908","https://openalex.org/W2788228074","https://openalex.org/W2789843538","https://openalex.org/W2808352813","https://openalex.org/W2898245710","https://openalex.org/W2950354111","https://openalex.org/W2953147862","https://openalex.org/W2958262353","https://openalex.org/W2981265504","https://openalex.org/W2992976869","https://openalex.org/W2994969834","https://openalex.org/W3009288150","https://openalex.org/W3012009036","https://openalex.org/W3022783334","https://openalex.org/W3047598142","https://openalex.org/W3049406222","https://openalex.org/W3102863871","https://openalex.org/W3103772912","https://openalex.org/W3128198169","https://openalex.org/W3206848838","https://openalex.org/W4249818926","https://openalex.org/W4393722671"],"related_works":["https://openalex.org/W2921363728","https://openalex.org/W2279684808","https://openalex.org/W2767590279","https://openalex.org/W2794386548","https://openalex.org/W4381279187","https://openalex.org/W1992950355","https://openalex.org/W3217304749","https://openalex.org/W2013063066","https://openalex.org/W2066142713","https://openalex.org/W2890379969"],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":53},{"year":2025,"cited_by_count":128},{"year":2024,"cited_by_count":131},{"year":2023,"cited_by_count":84},{"year":2022,"cited_by_count":67},{"year":2021,"cited_by_count":17},{"year":2020,"cited_by_count":1}],"updated_date":"2026-05-17T08:19:37.847499","created_date":"2025-10-10T00:00:00"}
