{"id":"https://openalex.org/W3156482864","doi":"https://doi.org/10.1038/s43588-021-00055-6","title":"Cell-type-aware analysis of RNA-seq data","display_name":"Cell-type-aware analysis of RNA-seq data","publication_year":2021,"publication_date":"2021-04-15","ids":{"openalex":"https://openalex.org/W3156482864","doi":"https://doi.org/10.1038/s43588-021-00055-6","mag":"3156482864","pmid":"https://pubmed.ncbi.nlm.nih.gov/34957416"},"language":"en","primary_location":{"id":"doi:10.1038/s43588-021-00055-6","is_oa":false,"landing_page_url":"https://doi.org/10.1038/s43588-021-00055-6","pdf_url":null,"source":{"id":"https://openalex.org/S4210228084","display_name":"Nature Computational Science","issn_l":"2662-8457","issn":["2662-8457"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature Computational Science","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8697413","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101950203","display_name":"Chong Jin","orcid":"https://orcid.org/0000-0003-4863-3328"},"institutions":[{"id":"https://openalex.org/I114027177","display_name":"University of North Carolina at Chapel Hill","ror":"https://ror.org/0130frc33","country_code":"US","type":"education","lineage":["https://openalex.org/I114027177"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chong Jin","raw_affiliation_strings":["Department of Biostatistics, University of North Carolina at Chapel Hill","Department of Biostatistics, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biostatistics, University of North Carolina at Chapel Hill","institution_ids":["https://openalex.org/I114027177"]},{"raw_affiliation_string":"Department of Biostatistics, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA","institution_ids":["https://openalex.org/I114027177"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101488791","display_name":"Mengjie Chen","orcid":"https://orcid.org/0000-0002-6104-6729"},"institutions":[{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mengjie Chen","raw_affiliation_strings":["Genetic Medicine, University of Chicago","Genetic Medicine, University of Chicago, Chicago, IL, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Genetic Medicine, University of Chicago","institution_ids":["https://openalex.org/I40347166"]},{"raw_affiliation_string":"Genetic Medicine, University of Chicago, Chicago, IL, USA","institution_ids":["https://openalex.org/I40347166"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061416108","display_name":"D. Y. Lin","orcid":"https://orcid.org/0000-0002-0150-3115"},"institutions":[{"id":"https://openalex.org/I114027177","display_name":"University of North Carolina at Chapel Hill","ror":"https://ror.org/0130frc33","country_code":"US","type":"education","lineage":["https://openalex.org/I114027177"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dan-Yu Lin","raw_affiliation_strings":["Department of Biostatistics, University of North Carolina at Chapel Hill","Department of Biostatistics, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biostatistics, University of North Carolina at Chapel Hill","institution_ids":["https://openalex.org/I114027177"]},{"raw_affiliation_string":"Department of Biostatistics, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA","institution_ids":["https://openalex.org/I114027177"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5086153438","display_name":"Wei Sun","orcid":"https://orcid.org/0000-0002-6350-1107"},"institutions":[{"id":"https://openalex.org/I114027177","display_name":"University of North Carolina at Chapel Hill","ror":"https://ror.org/0130frc33","country_code":"US","type":"education","lineage":["https://openalex.org/I114027177"]},{"id":"https://openalex.org/I1326427960","display_name":"Cape Town HVTN Immunology Laboratory / Hutchinson Centre Research Institute of South Africa","ror":"https://ror.org/00wdsp051","country_code":"ZA","type":"nonprofit","lineage":["https://openalex.org/I1326427960","https://openalex.org/I4210089486"]},{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]},{"id":"https://openalex.org/I4210089486","display_name":"Fred Hutch Cancer Center","ror":"https://ror.org/007ps6h72","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210089486"]},{"id":"https://openalex.org/I4210127473","display_name":"Cancer Research Center","ror":"https://ror.org/03fbwjm33","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210127473"]}],"countries":["US","ZA"],"is_corresponding":true,"raw_author_name":"Wei Sun","raw_affiliation_strings":["Department of Biostatistics, University of North Carolina at Chapel Hill","Department of Biostatistics, University of Washington","Public Health Science Division, Fred Hutchinson Cancer Research Center","Public Health Science Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA"],"raw_orcid":"https://orcid.org/0000-0002-6350-1107","affiliations":[{"raw_affiliation_string":"Department of Biostatistics, University of North Carolina at Chapel Hill","institution_ids":["https://openalex.org/I114027177"]},{"raw_affiliation_string":"Department of Biostatistics, University of Washington","institution_ids":["https://openalex.org/I201448701"]},{"raw_affiliation_string":"Public Health Science Division, Fred Hutchinson Cancer Research Center","institution_ids":["https://openalex.org/I1326427960","https://openalex.org/I4210089486","https://openalex.org/I4210127473"]},{"raw_affiliation_string":"Public Health Science Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA","institution_ids":["https://openalex.org/I4210089486"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5086153438"],"corresponding_institution_ids":["https://openalex.org/I114027177","https://openalex.org/I1326427960","https://openalex.org/I201448701","https://openalex.org/I4210089486","https://openalex.org/I4210127473"],"apc_list":{"value":9750,"currency":"EUR","value_usd":11690},"apc_paid":null,"fwci":2.606,"has_fulltext":false,"cited_by_count":36,"citation_normalized_percentile":{"value":0.90855413,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"1","issue":"4","first_page":"253","last_page":"261"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10773","display_name":"Extracellular vesicles in disease","score":0.9890000224113464,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11313","display_name":"Immune cells in cancer","score":0.96670001745224,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/rna-seq","display_name":"RNA-Seq","score":0.7791205644607544},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4668489098548889},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.462060809135437},{"id":"https://openalex.org/keywords/type","display_name":"Type (biology)","score":0.4209452271461487},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3204496502876282},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.24263104796409607},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.24070435762405396},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.23391583561897278},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.1940310001373291}],"concepts":[{"id":"https://openalex.org/C107397762","wikidata":"https://www.wikidata.org/wiki/Q2542347","display_name":"RNA-Seq","level":5,"score":0.7791205644607544},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4668489098548889},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.462060809135437},{"id":"https://openalex.org/C2777299769","wikidata":"https://www.wikidata.org/wiki/Q3707858","display_name":"Type (biology)","level":2,"score":0.4209452271461487},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3204496502876282},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.24263104796409607},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.24070435762405396},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.23391583561897278},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.1940310001373291},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1038/s43588-021-00055-6","is_oa":false,"landing_page_url":"https://doi.org/10.1038/s43588-021-00055-6","pdf_url":null,"source":{"id":"https://openalex.org/S4210228084","display_name":"Nature Computational Science","issn_l":"2662-8457","issn":["2662-8457"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature Computational Science","raw_type":"journal-article"},{"id":"pmid:34957416","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34957416","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature computational science","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:8697413","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8697413","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nat Comput Sci","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:8697413","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8697413","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nat Comput Sci","raw_type":"Text"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1209886030","display_name":null,"funder_award_id":"R01 GM126550","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G1273982765","display_name":null,"funder_award_id":"R21CA224026","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G2095348026","display_name":null,"funder_award_id":"R01GM126550","funder_id":"https://openalex.org/F4320306085","funder_display_name":"U.S. Department of Health and Human Services"},{"id":"https://openalex.org/G2507033445","display_name":null,"funder_award_id":"R21CA224026","funder_id":"https://openalex.org/F4320306085","funder_display_name":"U.S. Department of Health and Human Services"},{"id":"https://openalex.org/G2775946608","display_name":null,"funder_award_id":"P01CA142538","funder_id":"https://openalex.org/F4320306085","funder_display_name":"U.S. Department of Health and Human Services"},{"id":"https://openalex.org/G3080013420","display_name":null,"funder_award_id":"P01 CA142538","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G345745147","display_name":null,"funder_award_id":"R01GM105785","funder_id":"https://openalex.org/F4320306085","funder_display_name":"U.S. Department of Health and Human Services"},{"id":"https://openalex.org/G5287097718","display_name":null,"funder_award_id":"R01GM126553","funder_id":"https://openalex.org/F4320306085","funder_display_name":"U.S. Department of Health and Human Services"},{"id":"https://openalex.org/G6075304968","display_name":null,"funder_award_id":"R01GM126553","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G6251589193","display_name":null,"funder_award_id":"R01GM105785","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G6306330630","display_name":null,"funder_award_id":"R01 HL149683","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"},{"id":"https://openalex.org/G6350625074","display_name":null,"funder_award_id":"R21 CA224026","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G7189906549","display_name":null,"funder_award_id":"R01 HG009974","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G7248835867","display_name":null,"funder_award_id":"R01GM126550","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G736634319","display_name":null,"funder_award_id":"R01 GM105785","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G7405832489","display_name":null,"funder_award_id":"R01HG009974","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G7653734861","display_name":null,"funder_award_id":"R01 GM126553","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G8244479231","display_name":null,"funder_award_id":"P01CA142538","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G8435788039","display_name":null,"funder_award_id":"R01HG009974","funder_id":"https://openalex.org/F4320306085","funder_display_name":"U.S. Department of Health and Human Services"},{"id":"https://openalex.org/G973838041","display_name":null,"funder_award_id":"DMS-2016307","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320306085","display_name":"U.S. Department of Health and Human Services","ror":"https://ror.org/033jnv181"},{"id":"https://openalex.org/F4320306151","display_name":"Alfred P. Sloan Foundation","ror":"https://ror.org/052csg198"},{"id":"https://openalex.org/F4320337338","display_name":"National Heart, Lung, and Blood Institute","ror":"https://ror.org/012pb6c26"},{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":39,"referenced_works":["https://openalex.org/W1963724713","https://openalex.org/W1964895626","https://openalex.org/W1985987855","https://openalex.org/W2056423859","https://openalex.org/W2090326649","https://openalex.org/W2094882749","https://openalex.org/W2107018762","https://openalex.org/W2107060225","https://openalex.org/W2114104545","https://openalex.org/W2124097252","https://openalex.org/W2155388222","https://openalex.org/W2164595404","https://openalex.org/W2169353806","https://openalex.org/W2179438025","https://openalex.org/W2268962324","https://openalex.org/W2316180691","https://openalex.org/W2340656051","https://openalex.org/W2410658921","https://openalex.org/W2472544934","https://openalex.org/W2526546796","https://openalex.org/W2560760305","https://openalex.org/W2612519453","https://openalex.org/W2617984397","https://openalex.org/W2751434657","https://openalex.org/W2811102313","https://openalex.org/W2904884010","https://openalex.org/W2919386822","https://openalex.org/W2942610007","https://openalex.org/W2946016273","https://openalex.org/W2952207039","https://openalex.org/W2952420117","https://openalex.org/W2955503846","https://openalex.org/W2960701171","https://openalex.org/W2968984059","https://openalex.org/W2969948459","https://openalex.org/W3005382457","https://openalex.org/W3099862724","https://openalex.org/W4213108508","https://openalex.org/W6931391251"],"related_works":["https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W4391375266","https://openalex.org/W2082860237","https://openalex.org/W2119695867","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W2046158694","https://openalex.org/W2788277189"],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":21},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":2}],"updated_date":"2026-06-24T13:16:06.693445","created_date":"2025-10-10T00:00:00"}
