{"id":"https://openalex.org/W3132828104","doi":"https://doi.org/10.1038/s43588-021-00030-1","title":"Consistent cross-modal identification of cortical neurons with coupled autoencoders","display_name":"Consistent cross-modal identification of cortical neurons with coupled autoencoders","publication_year":2021,"publication_date":"2021-02-22","ids":{"openalex":"https://openalex.org/W3132828104","doi":"https://doi.org/10.1038/s43588-021-00030-1","mag":"3132828104","pmid":"https://pubmed.ncbi.nlm.nih.gov/35356158"},"language":"en","primary_location":{"id":"doi:10.1038/s43588-021-00030-1","is_oa":false,"landing_page_url":"https://doi.org/10.1038/s43588-021-00030-1","pdf_url":null,"source":{"id":"https://openalex.org/S4210228084","display_name":"Nature Computational Science","issn_l":"2662-8457","issn":["2662-8457"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature Computational Science","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8963134","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5032209154","display_name":"Rohan Gala","orcid":"https://orcid.org/0000-0003-1872-0957"},"institutions":[{"id":"https://openalex.org/I4210140341","display_name":"Allen Institute","ror":"https://ror.org/03cpe7c52","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210140341"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Rohan Gala","raw_affiliation_strings":["Allen Institute, Seattle, WA, USA"],"raw_orcid":"https://orcid.org/0000-0003-1872-0957","affiliations":[{"raw_affiliation_string":"Allen Institute, Seattle, WA, USA","institution_ids":["https://openalex.org/I4210140341"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020324194","display_name":"Agata Budzillo","orcid":"https://orcid.org/0000-0002-2723-3272"},"institutions":[{"id":"https://openalex.org/I4210140341","display_name":"Allen Institute","ror":"https://ror.org/03cpe7c52","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210140341"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Agata Budzillo","raw_affiliation_strings":["Allen Institute, Seattle, WA, USA"],"raw_orcid":"https://orcid.org/0000-0002-2723-3272","affiliations":[{"raw_affiliation_string":"Allen Institute, Seattle, WA, USA","institution_ids":["https://openalex.org/I4210140341"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073498841","display_name":"Fahimeh Baftizadeh","orcid":"https://orcid.org/0000-0003-4580-622X"},"institutions":[{"id":"https://openalex.org/I4210140341","display_name":"Allen Institute","ror":"https://ror.org/03cpe7c52","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210140341"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Fahimeh Baftizadeh","raw_affiliation_strings":["Allen Institute, Seattle, WA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Allen Institute, Seattle, WA, USA","institution_ids":["https://openalex.org/I4210140341"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035033544","display_name":"Jeremy A. Miller","orcid":"https://orcid.org/0000-0003-4549-588X"},"institutions":[{"id":"https://openalex.org/I4210140341","display_name":"Allen Institute","ror":"https://ror.org/03cpe7c52","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210140341"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jeremy Miller","raw_affiliation_strings":["Allen Institute, Seattle, WA, USA"],"raw_orcid":"https://orcid.org/0000-0003-4549-588X","affiliations":[{"raw_affiliation_string":"Allen Institute, Seattle, WA, USA","institution_ids":["https://openalex.org/I4210140341"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026348468","display_name":"Nathan W. Gouwens","orcid":"https://orcid.org/0000-0001-8429-4090"},"institutions":[{"id":"https://openalex.org/I4210140341","display_name":"Allen Institute","ror":"https://ror.org/03cpe7c52","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210140341"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nathan Gouwens","raw_affiliation_strings":["Allen Institute, Seattle, WA, USA"],"raw_orcid":"https://orcid.org/0000-0001-8429-4090","affiliations":[{"raw_affiliation_string":"Allen Institute, Seattle, WA, USA","institution_ids":["https://openalex.org/I4210140341"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000306868","display_name":"Anton Arkhipov","orcid":"https://orcid.org/0000-0003-1106-8310"},"institutions":[{"id":"https://openalex.org/I4210140341","display_name":"Allen Institute","ror":"https://ror.org/03cpe7c52","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210140341"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Anton Arkhipov","raw_affiliation_strings":["Allen Institute, Seattle, WA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Allen Institute, Seattle, WA, USA","institution_ids":["https://openalex.org/I4210140341"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068605154","display_name":"Gabe J. Murphy","orcid":"https://orcid.org/0000-0002-9321-8556"},"institutions":[{"id":"https://openalex.org/I4210140341","display_name":"Allen Institute","ror":"https://ror.org/03cpe7c52","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210140341"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Gabe Murphy","raw_affiliation_strings":["Allen Institute, Seattle, WA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Allen Institute, Seattle, WA, USA","institution_ids":["https://openalex.org/I4210140341"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012251441","display_name":"Bosiljka Tasic","orcid":"https://orcid.org/0000-0002-6861-4506"},"institutions":[{"id":"https://openalex.org/I4210140341","display_name":"Allen Institute","ror":"https://ror.org/03cpe7c52","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210140341"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bosiljka Tasic","raw_affiliation_strings":["Allen Institute, Seattle, WA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Allen Institute, Seattle, WA, USA","institution_ids":["https://openalex.org/I4210140341"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010189175","display_name":"Hongkui Zeng","orcid":"https://orcid.org/0000-0002-0326-5878"},"institutions":[{"id":"https://openalex.org/I4210140341","display_name":"Allen Institute","ror":"https://ror.org/03cpe7c52","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210140341"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hongkui Zeng","raw_affiliation_strings":["Allen Institute, Seattle, WA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Allen Institute, Seattle, WA, USA","institution_ids":["https://openalex.org/I4210140341"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090586758","display_name":"Michael Hawrylycz","orcid":"https://orcid.org/0000-0002-5741-8024"},"institutions":[{"id":"https://openalex.org/I4210140341","display_name":"Allen Institute","ror":"https://ror.org/03cpe7c52","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210140341"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael Hawrylycz","raw_affiliation_strings":["Allen Institute, Seattle, WA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Allen Institute, Seattle, WA, USA","institution_ids":["https://openalex.org/I4210140341"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5079933409","display_name":"Uygar S\u00fcmb\u00fcl","orcid":"https://orcid.org/0000-0001-7134-8897"},"institutions":[{"id":"https://openalex.org/I4210140341","display_name":"Allen Institute","ror":"https://ror.org/03cpe7c52","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210140341"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Uygar S\u00fcmb\u00fcl","raw_affiliation_strings":["Allen Institute, Seattle, WA, USA"],"raw_orcid":"https://orcid.org/0000-0001-7134-8897","affiliations":[{"raw_affiliation_string":"Allen Institute, Seattle, WA, USA","institution_ids":["https://openalex.org/I4210140341"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":11,"corresponding_author_ids":["https://openalex.org/A5032209154"],"corresponding_institution_ids":["https://openalex.org/I4210140341"],"apc_list":{"value":9750,"currency":"EUR","value_usd":11690},"apc_paid":null,"fwci":3.42,"has_fulltext":false,"cited_by_count":44,"citation_normalized_percentile":{"value":0.93757927,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"1","issue":"2","first_page":"120","last_page":"127"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10581","display_name":"Neural dynamics and brain function","score":0.9957000017166138,"subfield":{"id":"https://openalex.org/subfields/2805","display_name":"Cognitive Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.988099992275238,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/modalities","display_name":"Modalities","score":0.7533689737319946},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5999871492385864},{"id":"https://openalex.org/keywords/parsing","display_name":"Parsing","score":0.5818512439727783},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5229421854019165},{"id":"https://openalex.org/keywords/neuroscience","display_name":"Neuroscience","score":0.476146936416626},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.43532827496528625},{"id":"https://openalex.org/keywords/profiling","display_name":"Profiling (computer programming)","score":0.43335235118865967},{"id":"https://openalex.org/keywords/modal","display_name":"Modal","score":0.4308894872665405},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.42684391140937805},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.33167824149131775},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.32471221685409546},{"id":"https://openalex.org/keywords/psychology","display_name":"Psychology","score":0.16953179240226746},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.14657124876976013}],"concepts":[{"id":"https://openalex.org/C2779903281","wikidata":"https://www.wikidata.org/wiki/Q6888026","display_name":"Modalities","level":2,"score":0.7533689737319946},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5999871492385864},{"id":"https://openalex.org/C186644900","wikidata":"https://www.wikidata.org/wiki/Q194152","display_name":"Parsing","level":2,"score":0.5818512439727783},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5229421854019165},{"id":"https://openalex.org/C169760540","wikidata":"https://www.wikidata.org/wiki/Q207011","display_name":"Neuroscience","level":1,"score":0.476146936416626},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.43532827496528625},{"id":"https://openalex.org/C187191949","wikidata":"https://www.wikidata.org/wiki/Q1138496","display_name":"Profiling (computer programming)","level":2,"score":0.43335235118865967},{"id":"https://openalex.org/C71139939","wikidata":"https://www.wikidata.org/wiki/Q910194","display_name":"Modal","level":2,"score":0.4308894872665405},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.42684391140937805},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.33167824149131775},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.32471221685409546},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.16953179240226746},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.14657124876976013},{"id":"https://openalex.org/C36289849","wikidata":"https://www.wikidata.org/wiki/Q34749","display_name":"Social science","level":1,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C188027245","wikidata":"https://www.wikidata.org/wiki/Q750446","display_name":"Polymer chemistry","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1038/s43588-021-00030-1","is_oa":false,"landing_page_url":"https://doi.org/10.1038/s43588-021-00030-1","pdf_url":null,"source":{"id":"https://openalex.org/S4210228084","display_name":"Nature Computational Science","issn_l":"2662-8457","issn":["2662-8457"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature Computational Science","raw_type":"journal-article"},{"id":"pmid:35356158","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35356158","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature computational science","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:8963134","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8963134","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nat Comput Sci","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:8963134","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8963134","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nat Comput Sci","raw_type":"Text"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4814557868","display_name":null,"funder_award_id":"1RF1MH123220-01","funder_id":"https://openalex.org/F4320337346","funder_display_name":"National Institute of Mental Health"},{"id":"https://openalex.org/G5539905819","display_name":null,"funder_award_id":"1RF1MH123220-01","funder_id":"https://openalex.org/F4320337611","funder_display_name":"Eunice Kennedy Shriver National Institute of Child Health and Human Development"}],"funders":[{"id":"https://openalex.org/F4320337346","display_name":"National Institute of Mental Health","ror":"https://ror.org/04xeg9z08"},{"id":"https://openalex.org/F4320337611","display_name":"Eunice Kennedy Shriver National Institute of Child Health and Human Development","ror":"https://ror.org/04byxyr05"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":43,"referenced_works":["https://openalex.org/W1523385540","https://openalex.org/W1883346539","https://openalex.org/W1964073652","https://openalex.org/W1967327758","https://openalex.org/W1979283544","https://openalex.org/W1995031373","https://openalex.org/W2042789810","https://openalex.org/W2048092465","https://openalex.org/W2062450961","https://openalex.org/W2095705004","https://openalex.org/W2155924534","https://openalex.org/W2503929286","https://openalex.org/W2510476362","https://openalex.org/W2614527743","https://openalex.org/W2619383789","https://openalex.org/W2744478946","https://openalex.org/W2751012569","https://openalex.org/W2769765726","https://openalex.org/W2787894218","https://openalex.org/W2797909204","https://openalex.org/W2892816441","https://openalex.org/W2906213364","https://openalex.org/W2949117887","https://openalex.org/W2949177718","https://openalex.org/W2949311293","https://openalex.org/W2950976066","https://openalex.org/W2951619011","https://openalex.org/W2952995021","https://openalex.org/W2970656204","https://openalex.org/W2973144132","https://openalex.org/W2984612860","https://openalex.org/W2987023750","https://openalex.org/W3016683513","https://openalex.org/W3016803696","https://openalex.org/W3038882582","https://openalex.org/W3043632644","https://openalex.org/W3101846945","https://openalex.org/W3106117005","https://openalex.org/W3122451732","https://openalex.org/W3132828104","https://openalex.org/W3202115170","https://openalex.org/W4242111955","https://openalex.org/W6907789865"],"related_works":["https://openalex.org/W2185469136","https://openalex.org/W2011264131","https://openalex.org/W4306353150","https://openalex.org/W2026860389","https://openalex.org/W8219677","https://openalex.org/W3216879894","https://openalex.org/W2890132085","https://openalex.org/W3207883763","https://openalex.org/W4301143707","https://openalex.org/W2952745240"],"abstract_inverted_index":null,"counts_by_year":[{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":11},{"year":2023,"cited_by_count":12},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":8},{"year":2020,"cited_by_count":2}],"updated_date":"2026-05-16T08:24:45.110214","created_date":"2025-10-10T00:00:00"}
