{"id":"https://openalex.org/W3118430750","doi":"https://doi.org/10.1038/s43588-020-00009-4","title":"An efficient and effective method to identify significantly perturbed subnetworks in cancer","display_name":"An efficient and effective method to identify significantly perturbed subnetworks in cancer","publication_year":2021,"publication_date":"2021-01-14","ids":{"openalex":"https://openalex.org/W3118430750","doi":"https://doi.org/10.1038/s43588-020-00009-4","mag":"3118430750","pmid":"https://pubmed.ncbi.nlm.nih.gov/37346964"},"language":"en","primary_location":{"id":"doi:10.1038/s43588-020-00009-4","is_oa":false,"landing_page_url":"https://doi.org/10.1038/s43588-020-00009-4","pdf_url":null,"source":{"id":"https://openalex.org/S4210228084","display_name":"Nature Computational Science","issn_l":"2662-8457","issn":["2662-8457"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature Computational Science","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10284573/pdf/nihms-1857839.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5029859331","display_name":"Le Yang","orcid":"https://orcid.org/0000-0002-9750-5691"},"institutions":[{"id":"https://openalex.org/I63190737","display_name":"University at Buffalo, State University of New York","ror":"https://ror.org/01y64my43","country_code":"US","type":"education","lineage":["https://openalex.org/I63190737"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Le Yang","raw_affiliation_strings":["Department of Computer Science and Engineering, The State University of New York at Buffalo, Buffalo, NY, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, The State University of New York at Buffalo, Buffalo, NY, USA","institution_ids":["https://openalex.org/I63190737"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072261919","display_name":"Runpu Chen","orcid":"https://orcid.org/0000-0001-5290-6064"},"institutions":[{"id":"https://openalex.org/I63190737","display_name":"University at Buffalo, State University of New York","ror":"https://ror.org/01y64my43","country_code":"US","type":"education","lineage":["https://openalex.org/I63190737"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Runpu Chen","raw_affiliation_strings":["Department of Computer Science and Engineering, The State University of New York at Buffalo, Buffalo, NY, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, The State University of New York at Buffalo, Buffalo, NY, USA","institution_ids":["https://openalex.org/I63190737"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040870373","display_name":"Steve Goodison","orcid":null},"institutions":[{"id":"https://openalex.org/I4210146710","display_name":"Mayo Clinic in Florida","ror":"https://ror.org/03zzw1w08","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210146710"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Steve Goodison","raw_affiliation_strings":["Department of Health Sciences Research, Mayo Clinic, Jacksonville, FL, USA"],"affiliations":[{"raw_affiliation_string":"Department of Health Sciences Research, Mayo Clinic, Jacksonville, FL, USA","institution_ids":["https://openalex.org/I4210146710"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5039662308","display_name":"Yijun Sun","orcid":"https://orcid.org/0000-0003-0610-6132"},"institutions":[{"id":"https://openalex.org/I63190737","display_name":"University at Buffalo, State University of New York","ror":"https://ror.org/01y64my43","country_code":"US","type":"education","lineage":["https://openalex.org/I63190737"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Yijun Sun","raw_affiliation_strings":["Department of Biostatistics, The State University of New York at Buffalo, Buffalo, NY, USA","Department of Computer Science and Engineering, The State University of New York at Buffalo, Buffalo, NY, USA","Department of Microbiology and Immunology, The State University of New York at Buffalo, Buffalo, NY, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biostatistics, The State University of New York at Buffalo, Buffalo, NY, USA","institution_ids":["https://openalex.org/I63190737"]},{"raw_affiliation_string":"Department of Computer Science and Engineering, The State University of New York at Buffalo, Buffalo, NY, USA","institution_ids":["https://openalex.org/I63190737"]},{"raw_affiliation_string":"Department of Microbiology and Immunology, The State University of New York at Buffalo, Buffalo, NY, USA","institution_ids":["https://openalex.org/I63190737"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5039662308","https://openalex.org/A5040870373"],"corresponding_institution_ids":["https://openalex.org/I4210146710","https://openalex.org/I63190737"],"apc_list":{"value":9750,"currency":"EUR","value_usd":11690},"apc_paid":null,"fwci":1.6231,"has_fulltext":true,"cited_by_count":23,"citation_normalized_percentile":{"value":0.83520139,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":98},"biblio":{"volume":"1","issue":"1","first_page":"79","last_page":"88"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.6604160070419312},{"id":"https://openalex.org/keywords/key","display_name":"Key (lock)","score":0.6561715006828308},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6362334489822388},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5654674768447876},{"id":"https://openalex.org/keywords/constraint","display_name":"Constraint (computer-aided design)","score":0.5265134572982788},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.45601820945739746},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.45580199360847473},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2435707449913025},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.23433032631874084},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.1811378300189972},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.14969855546951294},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.08166429400444031}],"concepts":[{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.6604160070419312},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.6561715006828308},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6362334489822388},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5654674768447876},{"id":"https://openalex.org/C2776036281","wikidata":"https://www.wikidata.org/wiki/Q48769818","display_name":"Constraint (computer-aided design)","level":2,"score":0.5265134572982788},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.45601820945739746},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.45580199360847473},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2435707449913025},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.23433032631874084},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1811378300189972},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.14969855546951294},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.08166429400444031},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1038/s43588-020-00009-4","is_oa":false,"landing_page_url":"https://doi.org/10.1038/s43588-020-00009-4","pdf_url":null,"source":{"id":"https://openalex.org/S4210228084","display_name":"Nature Computational Science","issn_l":"2662-8457","issn":["2662-8457"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature Computational Science","raw_type":"journal-article"},{"id":"pmid:37346964","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37346964","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature computational science","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10284573","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10284573","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10284573/pdf/nihms-1857839.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nat Comput Sci","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:10284573","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10284573","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10284573/pdf/nihms-1857839.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nat Comput Sci","raw_type":"Text"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2354285598","display_name":null,"funder_award_id":"DE024523","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3307258267","display_name":null,"funder_award_id":"AI125982","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4506710543","display_name":null,"funder_award_id":"R01AI125982","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7074974297","display_name":null,"funder_award_id":"R01CA241123","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W3118430750.pdf"},"referenced_works_count":67,"referenced_works":["https://openalex.org/W1563728026","https://openalex.org/W1824047490","https://openalex.org/W1970599272","https://openalex.org/W1976564639","https://openalex.org/W1983162007","https://openalex.org/W1989277387","https://openalex.org/W1989921625","https://openalex.org/W2007861438","https://openalex.org/W2008108079","https://openalex.org/W2009720434","https://openalex.org/W2011941471","https://openalex.org/W2021145743","https://openalex.org/W2034432217","https://openalex.org/W2044702943","https://openalex.org/W2059736685","https://openalex.org/W2062312459","https://openalex.org/W2065311047","https://openalex.org/W2074089196","https://openalex.org/W2086254934","https://openalex.org/W2088891952","https://openalex.org/W2093043381","https://openalex.org/W2095319945","https://openalex.org/W2096283457","https://openalex.org/W2096596684","https://openalex.org/W2101035019","https://openalex.org/W2104843251","https://openalex.org/W2107953475","https://openalex.org/W2110065044","https://openalex.org/W2110482684","https://openalex.org/W2111237323","https://openalex.org/W2112811019","https://openalex.org/W2117083828","https://openalex.org/W2117513900","https://openalex.org/W2122863289","https://openalex.org/W2129485525","https://openalex.org/W2129769331","https://openalex.org/W2134508297","https://openalex.org/W2135230352","https://openalex.org/W2144940507","https://openalex.org/W2148043260","https://openalex.org/W2149082178","https://openalex.org/W2153056550","https://openalex.org/W2154452346","https://openalex.org/W2157852151","https://openalex.org/W2159675211","https://openalex.org/W2163480486","https://openalex.org/W2171537806","https://openalex.org/W2171662214","https://openalex.org/W2346548024","https://openalex.org/W2470861207","https://openalex.org/W2558715006","https://openalex.org/W2560367415","https://openalex.org/W2743418339","https://openalex.org/W2772832167","https://openalex.org/W2796408191","https://openalex.org/W2800903895","https://openalex.org/W2801763724","https://openalex.org/W2809201980","https://openalex.org/W2890112540","https://openalex.org/W2902463792","https://openalex.org/W2917858269","https://openalex.org/W2958196506","https://openalex.org/W4210490242","https://openalex.org/W4231254854","https://openalex.org/W4243979784","https://openalex.org/W6813094581","https://openalex.org/W6949968985"],"related_works":["https://openalex.org/W2378211422","https://openalex.org/W2745001401","https://openalex.org/W4321353415","https://openalex.org/W2130974462","https://openalex.org/W972276598","https://openalex.org/W4246352526","https://openalex.org/W2028665553","https://openalex.org/W4230315250","https://openalex.org/W2086519370","https://openalex.org/W2982428536"],"abstract_inverted_index":null,"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":6},{"year":2021,"cited_by_count":7}],"updated_date":"2026-03-24T08:02:53.985720","created_date":"2025-10-10T00:00:00"}
