{"id":"https://openalex.org/W4406833231","doi":"https://doi.org/10.1038/s42256-024-00942-3","title":"Moving towards genome-wide data integration for patient stratification with Integrate Any Omics","display_name":"Moving towards genome-wide data integration for patient stratification with Integrate Any Omics","publication_year":2025,"publication_date":"2025-01-23","ids":{"openalex":"https://openalex.org/W4406833231","doi":"https://doi.org/10.1038/s42256-024-00942-3"},"language":"en","primary_location":{"id":"doi:10.1038/s42256-024-00942-3","is_oa":false,"landing_page_url":"https://doi.org/10.1038/s42256-024-00942-3","pdf_url":null,"source":{"id":"https://openalex.org/S2912241403","display_name":"Nature Machine Intelligence","issn_l":"2522-5839","issn":["2522-5839"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature Machine Intelligence","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5054530702","display_name":"Shihao Ma","orcid":"https://orcid.org/0009-0005-9918-6638"},"institutions":[{"id":"https://openalex.org/I1325899441","display_name":"University Health Network","ror":"https://ror.org/042xt5161","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441"]},{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]},{"id":"https://openalex.org/I4210127509","display_name":"Vector Institute","ror":"https://ror.org/03kqdja62","country_code":"CA","type":"facility","lineage":["https://openalex.org/I4210127509"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Shihao Ma","raw_affiliation_strings":["Department of Computer Science, University of Toronto, Toronto, Canada","Peter Munk Cardiac Centre, University Health Network, Toronto, Canada","Vector Institute for Artificial Intelligence, Toronto, Canada"],"raw_orcid":"https://orcid.org/0009-0005-3279-257X","affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Toronto, Toronto, Canada","institution_ids":["https://openalex.org/I185261750"]},{"raw_affiliation_string":"Peter Munk Cardiac Centre, University Health Network, Toronto, Canada","institution_ids":["https://openalex.org/I1325899441"]},{"raw_affiliation_string":"Vector Institute for Artificial Intelligence, Toronto, Canada","institution_ids":["https://openalex.org/I4210127509"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074167760","display_name":"Andy G.X. Zeng","orcid":"https://orcid.org/0000-0002-3223-6400"},"institutions":[{"id":"https://openalex.org/I1325899441","display_name":"University Health Network","ror":"https://ror.org/042xt5161","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441"]},{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]},{"id":"https://openalex.org/I2802654988","display_name":"Princess Margaret Cancer Centre","ror":"https://ror.org/03zayce58","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441","https://openalex.org/I2802654988"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Andy G. X. Zeng","raw_affiliation_strings":["Department of Molecular Genetics, University of Toronto, Toronto, Canada","Princess Margaret Cancer Centre, University Health Network, Toronto, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Molecular Genetics, University of Toronto, Toronto, Canada","institution_ids":["https://openalex.org/I185261750"]},{"raw_affiliation_string":"Princess Margaret Cancer Centre, University Health Network, Toronto, Canada","institution_ids":["https://openalex.org/I2802654988","https://openalex.org/I1325899441"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010487226","display_name":"Benjamin Haibe\u2010Kains","orcid":"https://orcid.org/0000-0002-7684-0079"},"institutions":[{"id":"https://openalex.org/I1325899441","display_name":"University Health Network","ror":"https://ror.org/042xt5161","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441"]},{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]},{"id":"https://openalex.org/I2802654988","display_name":"Princess Margaret Cancer Centre","ror":"https://ror.org/03zayce58","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441","https://openalex.org/I2802654988"]},{"id":"https://openalex.org/I4210127509","display_name":"Vector Institute","ror":"https://ror.org/03kqdja62","country_code":"CA","type":"facility","lineage":["https://openalex.org/I4210127509"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Benjamin Haibe-Kains","raw_affiliation_strings":["Department of Medical Biophysics, University of Toronto, Toronto, Canada","Princess Margaret Cancer Centre, University Health Network, Toronto, Canada","Vector Institute for Artificial Intelligence, Toronto, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medical Biophysics, University of Toronto, Toronto, Canada","institution_ids":["https://openalex.org/I185261750"]},{"raw_affiliation_string":"Princess Margaret Cancer Centre, University Health Network, Toronto, Canada","institution_ids":["https://openalex.org/I2802654988","https://openalex.org/I1325899441"]},{"raw_affiliation_string":"Vector Institute for Artificial Intelligence, Toronto, Canada","institution_ids":["https://openalex.org/I4210127509"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087983309","display_name":"Anna Goldenberg","orcid":"https://orcid.org/0000-0002-2416-833X"},"institutions":[{"id":"https://openalex.org/I109736498","display_name":"Canadian Institute for Advanced Research","ror":"https://ror.org/01sdtdd95","country_code":"CA","type":"facility","lineage":["https://openalex.org/I109736498"]},{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]},{"id":"https://openalex.org/I2801317318","display_name":"Hospital for Sick Children","ror":"https://ror.org/057q4rt57","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I2801317318"]},{"id":"https://openalex.org/I4210127509","display_name":"Vector Institute","ror":"https://ror.org/03kqdja62","country_code":"CA","type":"facility","lineage":["https://openalex.org/I4210127509"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Anna Goldenberg","raw_affiliation_strings":["Canadian Institute for Advanced Research, Toronto, Canada","Department of Computer Science, University of Toronto, Toronto, Canada","Department of Laboratory Medicine and Pathobiology, University of Toronto, Toronto, Canada","Genetics and Genome Biology, The Hospital for Sick Children, Toronto, Canada","Vector Institute for Artificial Intelligence, Toronto, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Canadian Institute for Advanced Research, Toronto, Canada","institution_ids":["https://openalex.org/I109736498"]},{"raw_affiliation_string":"Department of Computer Science, University of Toronto, Toronto, Canada","institution_ids":["https://openalex.org/I185261750"]},{"raw_affiliation_string":"Department of Laboratory Medicine and Pathobiology, University of Toronto, Toronto, Canada","institution_ids":["https://openalex.org/I185261750"]},{"raw_affiliation_string":"Genetics and Genome Biology, The Hospital for Sick Children, Toronto, Canada","institution_ids":["https://openalex.org/I2801317318"]},{"raw_affiliation_string":"Vector Institute for Artificial Intelligence, Toronto, Canada","institution_ids":["https://openalex.org/I4210127509"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090356933","display_name":"John E. Dick","orcid":"https://orcid.org/0000-0002-9527-8317"},"institutions":[{"id":"https://openalex.org/I1325899441","display_name":"University Health Network","ror":"https://ror.org/042xt5161","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441"]},{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]},{"id":"https://openalex.org/I2802654988","display_name":"Princess Margaret Cancer Centre","ror":"https://ror.org/03zayce58","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441","https://openalex.org/I2802654988"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"John E. Dick","raw_affiliation_strings":["Department of Molecular Genetics, University of Toronto, Toronto, Canada","Princess Margaret Cancer Centre, University Health Network, Toronto, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Molecular Genetics, University of Toronto, Toronto, Canada","institution_ids":["https://openalex.org/I185261750"]},{"raw_affiliation_string":"Princess Margaret Cancer Centre, University Health Network, Toronto, Canada","institution_ids":["https://openalex.org/I2802654988","https://openalex.org/I1325899441"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100408160","display_name":"Bo Wang","orcid":"https://orcid.org/0000-0002-9620-3413"},"institutions":[{"id":"https://openalex.org/I109736498","display_name":"Canadian Institute for Advanced Research","ror":"https://ror.org/01sdtdd95","country_code":"CA","type":"facility","lineage":["https://openalex.org/I109736498"]},{"id":"https://openalex.org/I1325899441","display_name":"University Health Network","ror":"https://ror.org/042xt5161","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441"]},{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]},{"id":"https://openalex.org/I4210127509","display_name":"Vector Institute","ror":"https://ror.org/03kqdja62","country_code":"CA","type":"facility","lineage":["https://openalex.org/I4210127509"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Bo Wang","raw_affiliation_strings":["Canadian Institute for Advanced Research, Toronto, Canada","Department of Computer Science, University of Toronto, Toronto, Canada","Department of Laboratory Medicine and Pathobiology, University of Toronto, Toronto, Canada","Peter Munk Cardiac Centre, University Health Network, Toronto, Canada","Vector Institute for Artificial Intelligence, Toronto, Canada"],"raw_orcid":"https://orcid.org/0000-0002-9620-3413","affiliations":[{"raw_affiliation_string":"Canadian Institute for Advanced Research, Toronto, Canada","institution_ids":["https://openalex.org/I109736498"]},{"raw_affiliation_string":"Department of Computer Science, University of Toronto, Toronto, Canada","institution_ids":["https://openalex.org/I185261750"]},{"raw_affiliation_string":"Department of Laboratory Medicine and Pathobiology, University of Toronto, Toronto, Canada","institution_ids":["https://openalex.org/I185261750"]},{"raw_affiliation_string":"Peter Munk Cardiac Centre, University Health Network, Toronto, Canada","institution_ids":["https://openalex.org/I1325899441"]},{"raw_affiliation_string":"Vector Institute for Artificial Intelligence, Toronto, Canada","institution_ids":["https://openalex.org/I4210127509"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5054530702"],"corresponding_institution_ids":["https://openalex.org/I1325899441","https://openalex.org/I185261750","https://openalex.org/I4210127509"],"apc_list":{"value":9750,"currency":"EUR","value_usd":11690},"apc_paid":null,"fwci":13.152,"has_fulltext":false,"cited_by_count":16,"citation_normalized_percentile":{"value":0.99094605,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"7","issue":"1","first_page":"29","last_page":"42"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.993399977684021,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11369","display_name":"Genetic factors in colorectal cancer","score":0.9894000291824341,"subfield":{"id":"https://openalex.org/subfields/2734","display_name":"Pathology and Forensic Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/omics","display_name":"Omics","score":0.741260290145874},{"id":"https://openalex.org/keywords/risk-stratification","display_name":"Risk stratification","score":0.5638458728790283},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5161126852035522},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5104314684867859},{"id":"https://openalex.org/keywords/stratification","display_name":"Stratification (seeds)","score":0.4778958559036255},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3948310911655426},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.32932770252227783},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.2973916530609131},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.21371158957481384},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.19670474529266357},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1873016059398651}],"concepts":[{"id":"https://openalex.org/C157585117","wikidata":"https://www.wikidata.org/wiki/Q158666","display_name":"Omics","level":2,"score":0.741260290145874},{"id":"https://openalex.org/C3020404979","wikidata":"https://www.wikidata.org/wiki/Q1058438","display_name":"Risk stratification","level":2,"score":0.5638458728790283},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5161126852035522},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5104314684867859},{"id":"https://openalex.org/C192943249","wikidata":"https://www.wikidata.org/wiki/Q1893382","display_name":"Stratification (seeds)","level":5,"score":0.4778958559036255},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3948310911655426},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.32932770252227783},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.2973916530609131},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.21371158957481384},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.19670474529266357},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1873016059398651},{"id":"https://openalex.org/C3527866","wikidata":"https://www.wikidata.org/wiki/Q162267","display_name":"Dormancy","level":3,"score":0.0},{"id":"https://openalex.org/C100701293","wikidata":"https://www.wikidata.org/wiki/Q193838","display_name":"Germination","level":2,"score":0.0},{"id":"https://openalex.org/C88548481","wikidata":"https://www.wikidata.org/wiki/Q2397491","display_name":"Seed dormancy","level":4,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1038/s42256-024-00942-3","is_oa":false,"landing_page_url":"https://doi.org/10.1038/s42256-024-00942-3","pdf_url":null,"source":{"id":"https://openalex.org/S2912241403","display_name":"Nature Machine Intelligence","issn_l":"2522-5839","issn":["2522-5839"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature Machine Intelligence","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":38,"referenced_works":["https://openalex.org/W1255676896","https://openalex.org/W1537066827","https://openalex.org/W1986641583","https://openalex.org/W1987219048","https://openalex.org/W2003056152","https://openalex.org/W2022401242","https://openalex.org/W2025183726","https://openalex.org/W2100714130","https://openalex.org/W2118527670","https://openalex.org/W2149441684","https://openalex.org/W2180374961","https://openalex.org/W2185729964","https://openalex.org/W2287591593","https://openalex.org/W2607067837","https://openalex.org/W2626329567","https://openalex.org/W2767982909","https://openalex.org/W2800322522","https://openalex.org/W2884841488","https://openalex.org/W2889472696","https://openalex.org/W2896480326","https://openalex.org/W2906107882","https://openalex.org/W2950878899","https://openalex.org/W2970971581","https://openalex.org/W2997062412","https://openalex.org/W2997597306","https://openalex.org/W3004464823","https://openalex.org/W3027051073","https://openalex.org/W3049189585","https://openalex.org/W3087138092","https://openalex.org/W4224212751","https://openalex.org/W4224470052","https://openalex.org/W4281569605","https://openalex.org/W4319759388","https://openalex.org/W4362673398","https://openalex.org/W4379745448","https://openalex.org/W4390297987","https://openalex.org/W6930410029","https://openalex.org/W6930756130"],"related_works":["https://openalex.org/W4386554877","https://openalex.org/W4236138976","https://openalex.org/W3203136021","https://openalex.org/W177137871","https://openalex.org/W4403685181","https://openalex.org/W3173424037","https://openalex.org/W3215669510","https://openalex.org/W2033590167","https://openalex.org/W1583810757","https://openalex.org/W2001086065"],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":5},{"year":2025,"cited_by_count":11}],"updated_date":"2026-04-24T08:23:43.765630","created_date":"2025-10-10T00:00:00"}
