{"id":"https://openalex.org/W4402373303","doi":"https://doi.org/10.1038/s42256-024-00889-5","title":"Accelerating histopathology workflows with generative AI-based virtually multiplexed tumour profiling","display_name":"Accelerating histopathology workflows with generative AI-based virtually multiplexed tumour profiling","publication_year":2024,"publication_date":"2024-09-09","ids":{"openalex":"https://openalex.org/W4402373303","doi":"https://doi.org/10.1038/s42256-024-00889-5","pmid":"https://pubmed.ncbi.nlm.nih.gov/39309216"},"language":"en","primary_location":{"id":"doi:10.1038/s42256-024-00889-5","is_oa":true,"landing_page_url":"https://doi.org/10.1038/s42256-024-00889-5","pdf_url":null,"source":{"id":"https://openalex.org/S2912241403","display_name":"Nature Machine Intelligence","issn_l":"2522-5839","issn":["2522-5839"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature Machine Intelligence","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://doi.org/10.1038/s42256-024-00889-5","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5002897830","display_name":"Pushpak Pati","orcid":"https://orcid.org/0000-0003-2174-4255"},"institutions":[{"id":"https://openalex.org/I4210126328","display_name":"IBM Research - Zurich","ror":"https://ror.org/02js37d36","country_code":"CH","type":"facility","lineage":["https://openalex.org/I1341412227","https://openalex.org/I4210114115","https://openalex.org/I4210126328"]}],"countries":["CH"],"is_corresponding":true,"raw_author_name":"Pushpak Pati","raw_affiliation_strings":["IBM Research Europe, R\u00fcschlikon, Switzerland"],"affiliations":[{"raw_affiliation_string":"IBM Research Europe, R\u00fcschlikon, Switzerland","institution_ids":["https://openalex.org/I4210126328"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075235161","display_name":"Sofia Karkampouna","orcid":"https://orcid.org/0000-0002-1716-5237"},"institutions":[{"id":"https://openalex.org/I118564535","display_name":"University of Bern","ror":"https://ror.org/02k7v4d05","country_code":"CH","type":"education","lineage":["https://openalex.org/I118564535"]},{"id":"https://openalex.org/I2801112126","display_name":"University Hospital of Bern","ror":"https://ror.org/01q9sj412","country_code":"CH","type":"healthcare","lineage":["https://openalex.org/I2801112126"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Sofia Karkampouna","raw_affiliation_strings":["Department of Urology, Inselspital, Bern University Hospital, University of Bern, Bern, Switzerland","Urology Research Laboratory, Department for BioMedical Research, University of Bern, Bern, Switzerland"],"affiliations":[{"raw_affiliation_string":"Department of Urology, Inselspital, Bern University Hospital, University of Bern, Bern, Switzerland","institution_ids":["https://openalex.org/I2801112126","https://openalex.org/I118564535"]},{"raw_affiliation_string":"Urology Research Laboratory, Department for BioMedical Research, University of Bern, Bern, Switzerland","institution_ids":["https://openalex.org/I118564535"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033485414","display_name":"Francesco Bonollo","orcid":"https://orcid.org/0000-0003-3609-5956"},"institutions":[{"id":"https://openalex.org/I118564535","display_name":"University of Bern","ror":"https://ror.org/02k7v4d05","country_code":"CH","type":"education","lineage":["https://openalex.org/I118564535"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Francesco Bonollo","raw_affiliation_strings":["Urology Research Laboratory, Department for BioMedical Research, University of Bern, Bern, Switzerland"],"affiliations":[{"raw_affiliation_string":"Urology Research Laboratory, Department for BioMedical Research, University of Bern, Bern, Switzerland","institution_ids":["https://openalex.org/I118564535"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063195568","display_name":"\u00c9va Comp\u00e9rat","orcid":"https://orcid.org/0000-0001-8488-543X"},"institutions":[{"id":"https://openalex.org/I76134821","display_name":"Medical University of Vienna","ror":"https://ror.org/05n3x4p02","country_code":"AT","type":"education","lineage":["https://openalex.org/I76134821"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Eva Comp\u00e9rat","raw_affiliation_strings":["Department of Pathology, Medical University of Vienna, Vienna, Austria"],"affiliations":[{"raw_affiliation_string":"Department of Pathology, Medical University of Vienna, Vienna, Austria","institution_ids":["https://openalex.org/I76134821"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004625005","display_name":"Martina Radi\u0107","orcid":"https://orcid.org/0000-0002-4093-839X"},"institutions":[{"id":"https://openalex.org/I118564535","display_name":"University of Bern","ror":"https://ror.org/02k7v4d05","country_code":"CH","type":"education","lineage":["https://openalex.org/I118564535"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Martina Radi\u0107","raw_affiliation_strings":["Urology Research Laboratory, Department for BioMedical Research, University of Bern, Bern, Switzerland"],"affiliations":[{"raw_affiliation_string":"Urology Research Laboratory, Department for BioMedical Research, University of Bern, Bern, Switzerland","institution_ids":["https://openalex.org/I118564535"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058388599","display_name":"Martin Spahn","orcid":"https://orcid.org/0000-0002-5770-9489"},"institutions":[{"id":"https://openalex.org/I4210137807","display_name":"Lindenhofspital","ror":"https://ror.org/03z4rrt03","country_code":"CH","type":"healthcare","lineage":["https://openalex.org/I4210137807"]},{"id":"https://openalex.org/I62318514","display_name":"University of Duisburg-Essen","ror":"https://ror.org/04mz5ra38","country_code":"DE","type":"education","lineage":["https://openalex.org/I62318514"]}],"countries":["CH","DE"],"is_corresponding":false,"raw_author_name":"Martin Spahn","raw_affiliation_strings":["Department of Urology, Lindenhofspital Bern, Bern, Switzerland","Department of Urology, University Duisburg-Essen, Essen, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Urology, Lindenhofspital Bern, Bern, Switzerland","institution_ids":["https://openalex.org/I4210137807"]},{"raw_affiliation_string":"Department of Urology, University Duisburg-Essen, Essen, Germany","institution_ids":["https://openalex.org/I62318514"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103239237","display_name":"Adriano Martinelli","orcid":"https://orcid.org/0000-0002-9288-5103"},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]},{"id":"https://openalex.org/I4210126328","display_name":"IBM Research - Zurich","ror":"https://ror.org/02js37d36","country_code":"CH","type":"facility","lineage":["https://openalex.org/I1341412227","https://openalex.org/I4210114115","https://openalex.org/I4210126328"]},{"id":"https://openalex.org/I97565354","display_name":"University of Lausanne","ror":"https://ror.org/019whta54","country_code":"CH","type":"education","lineage":["https://openalex.org/I97565354"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Adriano Martinelli","raw_affiliation_strings":["Biomedical Data Science Center, Lausanne University Hospital, Lausanne, Switzerland","ETH Z\u00fcrich, Z\u00fcrich, Switzerland","IBM Research Europe, R\u00fcschlikon, Switzerland"],"affiliations":[{"raw_affiliation_string":"Biomedical Data Science Center, Lausanne University Hospital, Lausanne, Switzerland","institution_ids":["https://openalex.org/I97565354"]},{"raw_affiliation_string":"ETH Z\u00fcrich, Z\u00fcrich, Switzerland","institution_ids":["https://openalex.org/I35440088"]},{"raw_affiliation_string":"IBM Research Europe, R\u00fcschlikon, Switzerland","institution_ids":["https://openalex.org/I4210126328"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059950545","display_name":"Martin Wartenberg","orcid":"https://orcid.org/0000-0002-5378-3825"},"institutions":[{"id":"https://openalex.org/I118564535","display_name":"University of Bern","ror":"https://ror.org/02k7v4d05","country_code":"CH","type":"education","lineage":["https://openalex.org/I118564535"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Martin Wartenberg","raw_affiliation_strings":["Institute of Tissue Medicine and Pathology, University of Bern, Bern, Switzerland"],"affiliations":[{"raw_affiliation_string":"Institute of Tissue Medicine and Pathology, University of Bern, Bern, Switzerland","institution_ids":["https://openalex.org/I118564535"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032290331","display_name":"Marianna Kruithof\u2010de Julio","orcid":"https://orcid.org/0000-0002-6085-7706"},"institutions":[{"id":"https://openalex.org/I118564535","display_name":"University of Bern","ror":"https://ror.org/02k7v4d05","country_code":"CH","type":"education","lineage":["https://openalex.org/I118564535"]},{"id":"https://openalex.org/I2801112126","display_name":"University Hospital of Bern","ror":"https://ror.org/01q9sj412","country_code":"CH","type":"healthcare","lineage":["https://openalex.org/I2801112126"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Marianna Kruithof-de Julio","raw_affiliation_strings":["Department of Urology, Inselspital, Bern University Hospital, University of Bern, Bern, Switzerland","Translational Organoid Resource, Department for BioMedical Research, University of Bern, Bern, Switzerland","Urology Research Laboratory, Department for BioMedical Research, University of Bern, Bern, Switzerland"],"affiliations":[{"raw_affiliation_string":"Department of Urology, Inselspital, Bern University Hospital, University of Bern, Bern, Switzerland","institution_ids":["https://openalex.org/I2801112126","https://openalex.org/I118564535"]},{"raw_affiliation_string":"Translational Organoid Resource, Department for BioMedical Research, University of Bern, Bern, Switzerland","institution_ids":["https://openalex.org/I118564535"]},{"raw_affiliation_string":"Urology Research Laboratory, Department for BioMedical Research, University of Bern, Bern, Switzerland","institution_ids":["https://openalex.org/I118564535"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5005720694","display_name":"Maria Anna Rapsomaniki","orcid":"https://orcid.org/0000-0003-3883-4871"},"institutions":[{"id":"https://openalex.org/I4210126328","display_name":"IBM Research - Zurich","ror":"https://ror.org/02js37d36","country_code":"CH","type":"facility","lineage":["https://openalex.org/I1341412227","https://openalex.org/I4210114115","https://openalex.org/I4210126328"]},{"id":"https://openalex.org/I97565354","display_name":"University of Lausanne","ror":"https://ror.org/019whta54","country_code":"CH","type":"education","lineage":["https://openalex.org/I97565354"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Marianna Rapsomaniki","raw_affiliation_strings":["Biomedical Data Science Center, Lausanne University Hospital, Lausanne, Switzerland","Faculty of Biology and Medicine, University of Lausanne, Lausanne, Switzerland","IBM Research Europe, R\u00fcschlikon, Switzerland"],"affiliations":[{"raw_affiliation_string":"Biomedical Data Science Center, Lausanne University Hospital, Lausanne, Switzerland","institution_ids":["https://openalex.org/I97565354"]},{"raw_affiliation_string":"Faculty of Biology and Medicine, University of Lausanne, Lausanne, Switzerland","institution_ids":["https://openalex.org/I97565354"]},{"raw_affiliation_string":"IBM Research Europe, R\u00fcschlikon, Switzerland","institution_ids":["https://openalex.org/I4210126328"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5002897830"],"corresponding_institution_ids":["https://openalex.org/I4210126328"],"apc_list":{"value":9750,"currency":"EUR","value_usd":11690},"apc_paid":{"value":9750,"currency":"EUR","value_usd":11690},"fwci":20.7809,"has_fulltext":false,"cited_by_count":61,"citation_normalized_percentile":{"value":0.99554118,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"6","issue":"9","first_page":"1077","last_page":"1093"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.713594913482666},{"id":"https://openalex.org/keywords/h-e-stain","display_name":"H&E stain","score":0.6598828434944153},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.5883614420890808},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.571724534034729},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.5110713243484497},{"id":"https://openalex.org/keywords/histopathology","display_name":"Histopathology","score":0.47496411204338074},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.3914513885974884},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3870880901813507},{"id":"https://openalex.org/keywords/immunohistochemistry","display_name":"Immunohistochemistry","score":0.37869715690612793},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.29110997915267944},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.21527937054634094}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.713594913482666},{"id":"https://openalex.org/C125473707","wikidata":"https://www.wikidata.org/wiki/Q9914","display_name":"H&E stain","level":3,"score":0.6598828434944153},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.5883614420890808},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.571724534034729},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.5110713243484497},{"id":"https://openalex.org/C544855455","wikidata":"https://www.wikidata.org/wiki/Q1070952","display_name":"Histopathology","level":2,"score":0.47496411204338074},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3914513885974884},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3870880901813507},{"id":"https://openalex.org/C204232928","wikidata":"https://www.wikidata.org/wiki/Q899285","display_name":"Immunohistochemistry","level":2,"score":0.37869715690612793},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.29110997915267944},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.21527937054634094},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1038/s42256-024-00889-5","is_oa":true,"landing_page_url":"https://doi.org/10.1038/s42256-024-00889-5","pdf_url":null,"source":{"id":"https://openalex.org/S2912241403","display_name":"Nature Machine Intelligence","issn_l":"2522-5839","issn":["2522-5839"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature Machine Intelligence","raw_type":"journal-article"},{"id":"pmid:39309216","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39309216","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature machine intelligence","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11415301","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11415301","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nat Mach Intell","raw_type":"Text"},{"id":"pmh:oai:iris.unil.ch:iris/225307","is_oa":true,"landing_page_url":"https://iris.unil.ch/handle/iris/225307","pdf_url":null,"source":{"id":"https://openalex.org/S7407055444","display_name":"IRIS","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"journal article"},{"id":"pmh:oai:serval.unil.ch:BIB_7E52FA6DFCFD","is_oa":true,"landing_page_url":"https://serval.unil.ch/notice/serval:BIB_7E52FA6DFCFD","pdf_url":null,"source":{"id":"https://openalex.org/S4306401797","display_name":"SERVAL (Universit\u00e9 de Lausanne)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210093590","host_organization_name":"Swiss School of Archaeology in Greece","host_organization_lineage":["https://openalex.org/I4210093590"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nature machine intelligence, vol. 6, no. 9, pp. 1077-1093","raw_type":"info:eu-repo/semantics/publishedVersion"}],"best_oa_location":{"id":"doi:10.1038/s42256-024-00889-5","is_oa":true,"landing_page_url":"https://doi.org/10.1038/s42256-024-00889-5","pdf_url":null,"source":{"id":"https://openalex.org/S2912241403","display_name":"Nature Machine Intelligence","issn_l":"2522-5839","issn":["2522-5839"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature Machine Intelligence","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G7268380622","display_name":null,"funder_award_id":"CRSII5_202297","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"}],"funders":[{"id":"https://openalex.org/F4320320924","display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung","ror":"https://ror.org/00yjd3n13"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":75,"referenced_works":["https://openalex.org/W1984692997","https://openalex.org/W2041401635","https://openalex.org/W2043565262","https://openalex.org/W2044702943","https://openalex.org/W2044758669","https://openalex.org/W2053129129","https://openalex.org/W2096283457","https://openalex.org/W2108598243","https://openalex.org/W2112430920","https://openalex.org/W2141983208","https://openalex.org/W2183341477","https://openalex.org/W2194775991","https://openalex.org/W2262414037","https://openalex.org/W2343160907","https://openalex.org/W2475287302","https://openalex.org/W2560367415","https://openalex.org/W2573302613","https://openalex.org/W2593414223","https://openalex.org/W2766223259","https://openalex.org/W2884160046","https://openalex.org/W2949238013","https://openalex.org/W2955152335","https://openalex.org/W2962793481","https://openalex.org/W2963073614","https://openalex.org/W2963150697","https://openalex.org/W2963869863","https://openalex.org/W2970971581","https://openalex.org/W2974825848","https://openalex.org/W2999091210","https://openalex.org/W3002164240","https://openalex.org/W3008693315","https://openalex.org/W3026766084","https://openalex.org/W3027717081","https://openalex.org/W3038704997","https://openalex.org/W3084493749","https://openalex.org/W3098491829","https://openalex.org/W3104250195","https://openalex.org/W3108316907","https://openalex.org/W3141929194","https://openalex.org/W3175006244","https://openalex.org/W3191029526","https://openalex.org/W3191728126","https://openalex.org/W3209390330","https://openalex.org/W3214082102","https://openalex.org/W3216310288","https://openalex.org/W4200324152","https://openalex.org/W4205206005","https://openalex.org/W4205699867","https://openalex.org/W4205900565","https://openalex.org/W4206953207","https://openalex.org/W4207066074","https://openalex.org/W4225010001","https://openalex.org/W4226165034","https://openalex.org/W4226172937","https://openalex.org/W4249522930","https://openalex.org/W4281257868","https://openalex.org/W4281564034","https://openalex.org/W4283208270","https://openalex.org/W4283316793","https://openalex.org/W4283813454","https://openalex.org/W4295936365","https://openalex.org/W4295939746","https://openalex.org/W4310225029","https://openalex.org/W4312220066","https://openalex.org/W4312983118","https://openalex.org/W4323037718","https://openalex.org/W4362589322","https://openalex.org/W4375861579","https://openalex.org/W4385652395","https://openalex.org/W4386071785","https://openalex.org/W4388895542","https://openalex.org/W4389564462","https://openalex.org/W6930149539","https://openalex.org/W6930411826","https://openalex.org/W6944120547"],"related_works":["https://openalex.org/W3039419443","https://openalex.org/W4386772532","https://openalex.org/W4393212117","https://openalex.org/W2115661411","https://openalex.org/W2399391471","https://openalex.org/W2400254106","https://openalex.org/W2970729894","https://openalex.org/W4381996710","https://openalex.org/W4294739205","https://openalex.org/W197812291"],"abstract_inverted_index":{"Understanding":[0],"the":[1,45,106,127,148,161,202],"spatial":[2,163],"heterogeneity":[3],"of":[4,17,114,119,165,205],"tumours":[5],"and":[6,12,27,29,68,75,101,111,138,196,214],"its":[7],"links":[8],"to":[9,168,182],"disease":[10],"initiation":[11],"progression":[13],"is":[14,132],"a":[15,33,47,154],"cornerstone":[16],"cancer":[18,197,215],"biology.":[19,216],"Presently,":[20],"histopathology":[21,212],"workflows":[22,213],"heavily":[23],"rely":[24],"on":[25],"hematoxylin":[26,74],"eosin":[28,76],"serial":[30],"immunohistochemistry":[31,56],"staining,":[32],"cumbersome,":[34],"tissue-exhaustive":[35],"process":[36],"that":[37,52,105,123,157,175],"results":[38,200],"in":[39],"non-aligned":[40],"tissue":[41,86,91,136],"images.":[42],"We":[43,173],"propose":[44],"VirtualMultiplexer,":[46],"generative":[48],"artificial":[49,206],"intelligence":[50],"toolkit":[51],"effectively":[53],"synthesizes":[54],"multiplexed":[55,116,150,177,208],"images":[57,151],"for":[58,144],"several":[59,166,190],"antibody":[60],"markers":[61],"(namely":[62],"AR,":[63],"NKX3.1,":[64],"CD44,":[65],"CD146,":[66],"p53":[67],"ERG)":[69],"from":[70,126,160],"only":[71],"an":[72],"input":[73],"image.":[77],"The":[78,130],"VirtualMultiplexer":[79,107,131],"captures":[80],"biologically":[81],"relevant":[82,171],"staining":[83,121],"patterns":[84],"across":[85,135,189],"scales":[87,137],"without":[88],"requiring":[89],"consecutive":[90],"sections,":[92],"image":[93],"registration":[94],"or":[95],"extensive":[96],"expert":[97],"annotations.":[98],"Thorough":[99],"qualitative":[100],"quantitative":[102],"assessment":[103],"indicates":[104],"achieves":[108],"rapid,":[109],"robust":[110],"precise":[112],"generation":[113],"virtually":[115,149],"imaging":[117],"datasets":[118],"high":[120],"quality":[122],"are":[124],"indistinguishable":[125],"real":[128],"ones.":[129],"successfully":[133],"transferred":[134],"patient":[139,194],"cohorts":[140,195],"with":[141],"no":[142],"need":[143],"model":[145],"fine-tuning.":[146],"Crucially,":[147],"enabled":[152],"training":[153],"graph":[155],"transformer":[156],"simultaneously":[158],"learns":[159],"joint":[162],"distribution":[164],"proteins":[167],"predict":[169],"clinically":[170],"endpoints.":[172],"observe":[174],"this":[176],"learning":[178],"scheme":[179],"was":[180],"able":[181],"greatly":[183],"improve":[184],"clinical":[185,203],"prediction,":[186],"as":[187],"corroborated":[188],"downstream":[191],"tasks,":[192],"independent":[193],"types.":[198],"Our":[199],"showcase":[201],"relevance":[204],"intelligence-assisted":[207],"tumour":[209],"imaging,":[210],"accelerating":[211]},"counts_by_year":[{"year":2026,"cited_by_count":16},{"year":2025,"cited_by_count":42},{"year":2024,"cited_by_count":3}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
