{"id":"https://openalex.org/W4400090810","doi":"https://doi.org/10.1038/s42256-024-00860-4","title":"Direct conformational sampling from peptide energy landscapes through hypernetwork-conditioned diffusion","display_name":"Direct conformational sampling from peptide energy landscapes through hypernetwork-conditioned diffusion","publication_year":2024,"publication_date":"2024-06-27","ids":{"openalex":"https://openalex.org/W4400090810","doi":"https://doi.org/10.1038/s42256-024-00860-4"},"language":"en","primary_location":{"id":"doi:10.1038/s42256-024-00860-4","is_oa":false,"landing_page_url":"https://doi.org/10.1038/s42256-024-00860-4","pdf_url":null,"source":{"id":"https://openalex.org/S2912241403","display_name":"Nature Machine Intelligence","issn_l":"2522-5839","issn":["2522-5839"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature Machine Intelligence","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5013368575","display_name":"Osama Abdin","orcid":null},"institutions":[{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Osama Abdin","raw_affiliation_strings":["Department of Molecular Genetics, University of Toronto, Toronto, Ontario, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Molecular Genetics, University of Toronto, Toronto, Ontario, Canada","institution_ids":["https://openalex.org/I185261750"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5043262709","display_name":"Philip M. Kim","orcid":"https://orcid.org/0000-0003-3683-152X"},"institutions":[{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Philip M. Kim","raw_affiliation_strings":["Department of Computer Science, University of Toronto, Toronto, Ontario, Canada","Department of Molecular Genetics, University of Toronto, Toronto, Ontario, Canada","Donnelly Centre for Cellular and Biomolecular Research, University of Toronto, Toronto, Ontario, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Toronto, Toronto, Ontario, Canada","institution_ids":["https://openalex.org/I185261750"]},{"raw_affiliation_string":"Department of Molecular Genetics, University of Toronto, Toronto, Ontario, Canada","institution_ids":["https://openalex.org/I185261750"]},{"raw_affiliation_string":"Donnelly Centre for Cellular and Biomolecular Research, University of Toronto, Toronto, Ontario, Canada","institution_ids":["https://openalex.org/I185261750"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5013368575"],"corresponding_institution_ids":["https://openalex.org/I185261750"],"apc_list":{"value":9750,"currency":"EUR","value_usd":11690},"apc_paid":null,"fwci":3.8839,"has_fulltext":false,"cited_by_count":17,"citation_normalized_percentile":{"value":0.94282815,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"6","issue":"7","first_page":"775","last_page":"786"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.6153398156166077},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5952377319335938},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.5364060997962952},{"id":"https://openalex.org/keywords/biomolecule","display_name":"Biomolecule","score":0.5303811430931091},{"id":"https://openalex.org/keywords/sampling","display_name":"Sampling (signal processing)","score":0.521808385848999},{"id":"https://openalex.org/keywords/peptide","display_name":"Peptide","score":0.49300095438957214},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.4260939657688141},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.36168134212493896},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.27456408739089966},{"id":"https://openalex.org/keywords/nanotechnology","display_name":"Nanotechnology","score":0.2166401445865631},{"id":"https://openalex.org/keywords/materials-science","display_name":"Materials science","score":0.15089359879493713},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.08582070469856262}],"concepts":[{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.6153398156166077},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5952377319335938},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.5364060997962952},{"id":"https://openalex.org/C49853544","wikidata":"https://www.wikidata.org/wiki/Q206229","display_name":"Biomolecule","level":2,"score":0.5303811430931091},{"id":"https://openalex.org/C140779682","wikidata":"https://www.wikidata.org/wiki/Q210868","display_name":"Sampling (signal processing)","level":3,"score":0.521808385848999},{"id":"https://openalex.org/C2779281246","wikidata":"https://www.wikidata.org/wiki/Q172847","display_name":"Peptide","level":2,"score":0.49300095438957214},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.4260939657688141},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.36168134212493896},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.27456408739089966},{"id":"https://openalex.org/C171250308","wikidata":"https://www.wikidata.org/wiki/Q11468","display_name":"Nanotechnology","level":1,"score":0.2166401445865631},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.15089359879493713},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.08582070469856262},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C106131492","wikidata":"https://www.wikidata.org/wiki/Q3072260","display_name":"Filter (signal processing)","level":2,"score":0.0},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1038/s42256-024-00860-4","is_oa":false,"landing_page_url":"https://doi.org/10.1038/s42256-024-00860-4","pdf_url":null,"source":{"id":"https://openalex.org/S2912241403","display_name":"Nature Machine Intelligence","issn_l":"2522-5839","issn":["2522-5839"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature Machine Intelligence","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.6899999976158142,"id":"https://metadata.un.org/sdg/7","display_name":"Affordable and clean energy"}],"awards":[{"id":"https://openalex.org/G1949702599","display_name":null,"funder_award_id":"PJT-166008","funder_id":"https://openalex.org/F4320334506","funder_display_name":"Canadian Institutes of Health Research"},{"id":"https://openalex.org/G8435075970","display_name":null,"funder_award_id":"RGPIN-2017-064","funder_id":"https://openalex.org/F4320334593","funder_display_name":"Natural Sciences and Engineering Research Council of Canada"}],"funders":[{"id":"https://openalex.org/F4320334506","display_name":"Canadian Institutes of Health Research","ror":"https://ror.org/01gavpb45"},{"id":"https://openalex.org/F4320334593","display_name":"Natural Sciences and Engineering Research Council of Canada","ror":"https://ror.org/01h531d29"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":38,"referenced_works":["https://openalex.org/W1972043325","https://openalex.org/W2023272942","https://openalex.org/W2054954101","https://openalex.org/W2103743266","https://openalex.org/W2132629607","https://openalex.org/W2147988069","https://openalex.org/W2153187042","https://openalex.org/W2161605421","https://openalex.org/W2286914510","https://openalex.org/W2329540625","https://openalex.org/W2768968558","https://openalex.org/W2799876761","https://openalex.org/W2949223833","https://openalex.org/W2950954328","https://openalex.org/W2972246420","https://openalex.org/W3003257820","https://openalex.org/W3097405028","https://openalex.org/W3110257065","https://openalex.org/W3112873140","https://openalex.org/W3127297964","https://openalex.org/W3177828909","https://openalex.org/W3209420441","https://openalex.org/W4212959738","https://openalex.org/W4214847177","https://openalex.org/W4221149941","https://openalex.org/W4297235560","https://openalex.org/W4311539894","https://openalex.org/W4319166426","https://openalex.org/W4320040108","https://openalex.org/W4322207749","https://openalex.org/W4327550249","https://openalex.org/W4362679214","https://openalex.org/W4386793933","https://openalex.org/W4387389678","https://openalex.org/W4389712294","https://openalex.org/W6739901393","https://openalex.org/W6857214229","https://openalex.org/W6892599202"],"related_works":["https://openalex.org/W2367089784","https://openalex.org/W4281383848","https://openalex.org/W2344707987","https://openalex.org/W3021795417","https://openalex.org/W3182059148","https://openalex.org/W2914491564","https://openalex.org/W2028396431","https://openalex.org/W1998848630","https://openalex.org/W2073308043","https://openalex.org/W2753855002"],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":13},{"year":2024,"cited_by_count":1}],"updated_date":"2026-04-11T08:14:18.477133","created_date":"2025-10-10T00:00:00"}
